Xiphophorus hellerii (green swordtail): 116718820
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Entry
116718820 CDS
T07363
Symbol
cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116718820 (cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116718820 (cstf3)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
116718820 (cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_19
Motif
Other DBs
NCBI-GeneID:
116718820
NCBI-ProteinID:
XP_032416945
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Position
4:complement(14185247..14196357)
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AA seq
716 aa
AA seq
DB search
MSTEGTAEQTAAEYIPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTHERLVS
QFPSSGRFWKLFIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLAYVRETKGKLPSYK
EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP
MINIEQLWRDYSKYEEGINVHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP
QNSPQEAQQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQ
YLEQSSKLLAEKGDMNNSKLFSDEAANIYERAIGTLLKKNMLLYFAFADYEESRMKYEKV
HSIYNKLLAIEDIDPTLVYIQYMKFARRAEGIKSGRAIFKKAREDLRTRHHVYVSAALME
YYCSKDKSVAFKIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSPE
KSGEIWARFLAFESNIGDLASILKVERRRFTAFKDEYEGKETALLVDRYKFMDLYPCSTS
ELKALGYKDVSRAKLAALLPEAVVAPSVPTLKDDPDRKPEYPKPDTNQMIPYQPRHLAPP
GLHPVPGGVFPVPPAAVVLMKLLPPPTCFTGPFVQVDELMETFRRCTLPESVDAAVELIT
GRQPEAAGEGNGPMENHATAKSLKRPNADSDEEDDKGAIAPPIHDIYRARQQKRIR
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggagggaaccgccgagcagacagcagctgagtatattcctgagaaggtgaag
aaagcagagaagaagttggaagaaaacccatatgaccttgacgcatggagcattctgatt
cgagaagcacagaatcaacccatagataaagcaaggaagacccatgagcgacttgtctca
cagttcccgagttctggcagattctggaaactgttcattgaagccgagataaaggctaaa
aactatgacaaggtagagaagctgtttcagagatgcctaatgaaagtgttgcacattgac
ttgtggaaatgctaccttgcatatgttcgagagaccaaagggaagcttcccagctacaaa
gagaagatggcccaggcgtatgatttcgcccttgataaaattgggatggaaattatgtcc
tatcagatttgggtcgactacataaatttcctaaaaggagttgaggcagtgggctcatac
gcagaaaatcaaagaatcactgcggttcggagagtctaccaaagaggttgcgtgaaccca
atgataaacattgaacagctctggagagattatagcaaatatgaagagggtatcaatgtg
catttggctaaaaagatgattgaagatcgcagcagggattacatgaatgcaaggagagtg
gcaaaggagtatgagacagtaatgaaagggcttgacagaaacgcaccttcagttccacca
cagaactcccctcaggaggcccagcaagtggaaatgtggaaaaagtacattcagtgggaa
aaaagcaacccactccgcacagaagaccagaccctcatcacaaagagagtgatgtttgcc
tatgagcagtgcctgctggttctgggccaccatcccgacatttggtatgaggcagctcag
tacctggagcagtccagcaagctgctggcagagaaaggagacatgaataattcaaagctg
ttcagcgacgaagcagctaacatctatgaacgtgccattgggactctcctcaaaaagaac
atgctcctctactttgcgtttgctgattacgaagaaagtcgcatgaagtacgagaaagtg
cacagcatctacaacaaactgcttgcgatcgaggacatcgaccccacgctggtctacatc
cagtacatgaagttcgccaggagggcggagggcatcaaatcaggtcgcgccatcttcaaa
aaggctcgagaggacctacgcacgcgtcaccacgtctacgtgtctgcagctctgatggaa
tactactgcagcaaagacaaatcagtggcctttaagatttttgagctgggtttgaagaag
tatggagacattccagagtacatacttgcctacattgattacctctcccaccttaatgag
gataacaacactagggttttgttcgaacgggtcctcacctctggaagcctatccccagag
aaatcaggtgagatctgggctcggttcttggcgttcgagagcaacatcggagacctggcc
agtattctgaaagtagagcgccgacgtttcacagccttcaaagacgagtatgaggggaaa
gaaacggctttgcttgtagatagatacaagttcatggacctttatccctgctctaccagt
gaactcaaagcccttggttacaaggatgtgtctcgtgccaaactggcagcactgctccct
gaagctgtggtggctccctctgtgcctacactaaaggacgatcctgatcgtaaaccagag
tatcccaaaccagacaccaatcagatgatcccgtatcagccacgacacctcgctcctcca
ggtctacacccggtccctggtggagttttcccagtccctccagctgctgttgtcctaatg
aagctgctccctccacctacgtgtttcactggtccctttgttcaagtggatgagctcatg
gaaacttttaggagatgtacacttcctgagagtgttgatgctgctgtggagctcatcacc
ggcagacagcctgaggcggcaggggagggcaacggccccatggagaaccacgctaccgcc
aagtccctcaagaggccaaacgccgactccgatgaggaggacgacaagggagccatagct
ccacccattcacgacatctaccgcgcgcgccagcagaagaggattcgataa
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