Xiphophorus hellerii (green swordtail): 116718902
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Entry
116718902 CDS
T07363
Symbol
copb1
Name
(RefSeq) coatomer subunit beta
KO
K17301
coatomer subunit beta
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116718902 (copb1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xhe04147
]
116718902 (copb1)
Membrane trafficking [BR:
xhe04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
116718902 (copb1)
Exosome [BR:
xhe04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
116718902 (copb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatomer_b_Cpla
Coatamer_beta_C
HEAT_2
HEAT
Cnd1
HEAT_EZ
Arm
MMS19_N
Motif
Other DBs
NCBI-GeneID:
116718902
NCBI-ProteinID:
XP_032417077
LinkDB
All DBs
Position
4:complement(18507737..18518104)
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AA seq
953 aa
AA seq
DB search
MTAAENVCYTLINVASDSEPPSEVSLKTDLEKGEIKAKTEALKKVIIMILNGEKLPGLLM
TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGKLLQEMILVCDAYRKDLQHPNEFIRGST
LRFLCKLKESELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDF
LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVHTFGDILQLVIVELIYKVCHANPS
ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLI
VLDRLIELKDHPTHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVL
KKEVIKTNNVTEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDTNEAAAADV
LEFVREAIQRFDNLRPLIIEKMLEVFHAIKTVKIYRGALWILGEYCSTKEDIQSVMTEVR
RSLGEIPIVENEIKKETGELKPEDEVSAAPAQKLVTEMGTYVTQSALSSSRPSKKEEDRP
PLRGFLMDGDFFVAASLATTLTKLALRYVSIVQDKKKQNSFVAEAMLIMVTVLHLGKSSL
PKKPITDDDVERISLCLKVLSECSPLMNDIFNKECRRSLSHMLTVRLEEEKLSQKKESEK
RNVTVQADDPISFMQLTAKNEMTSKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLT
GFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPH
DFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDAEF
RQMWAEFEWENKVTVNTNITDLNEYLQHILKSTNMKCLTPEKALSGFCGFMAANLYARSI
FGEDALANVSIEKPIHLGPDAPVTGHIRIRAKSQGMALSLGDKINLSQKKANI
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgacagctgcagaaaatgtttgttacactctgataaatgttgcctctgactcggagccc
ccttctgaagtcagcttaaaaacagatctagaaaagggtgagatcaaagcaaaaactgaa
gccctgaagaaggtcatcatcatgatcctaaatggcgagaaattgccaggacttctgatg
accattattcgcttcgtgctgccactacaagaccacaccataaaaaagcttctgctggtt
ttctgggagattgttcccaaaacaactccagatggcaagctgctgcaggagatgatcctg
gtctgtgatgcctacaggaaggacctacagcatcccaacgagttcatccgtggctctact
ctccgtttcctgtgcaagctgaaggaatctgagctacttgagcctctgatgccggctatc
cgggcttgcctggagcaccgccacagctacgtccgccgaaatgctgtcctggccatttat
accatctataggaacttcgaacatctcatcccagatgctccagagttgatccatgatttt
cttgtcaatgaaaaagatgccagctgtaagagaaatgccttcatgatgctgattcatgca
gatcaggatcgagctctggattacctcagcacatgtatcgatcaggttcatactttcggt
gacatcctgcagctggtcattgtggagctgatatacaaggtttgccatgcaaatccatcg
gagcgcgcccgctttatccgttgcatctacaatctgctgcagtcttccagtccagcggtt
aagtatgaagctgctgggactcttgttactctctccagtgctcccacagccatcaaggct
gctgcgcagtgctacattgatttgatcatcaaggagagcgacaacaacgtcaagctgatt
gttctcgatcgtctgattgaactgaaggaccatccaactcatgagcgcgtacttcaagac
ctagtgatggacatcctgcgcgtcctcagcacccctgacctggaagtcagaaagaagacc
ttgcagctggccctggacctcgtctcctctcgtaacgtggaggagttggtgattgttctg
aagaaggaggtgattaaaacaaacaatgtaacagagcatgaagacactgataagtacaga
cagctgctggttcgcactctccactcatgcagcgtgcgcttccctgacatggcagctaat
gtcatacctgtgctgatggaattcctgagtgacactaatgaggcagctgctgctgatgtg
ctggagtttgtgagggaggccatccagaggtttgacaacttaagacctttgatcatcgag
aagatgctggaggtttttcatgccattaaaacagtcaagatctacaggggagcactttgg
attttaggagaatactgcagcactaaggaggacatccagagtgtgatgactgaagtacgc
aggtctctaggagagatcccaatagtggagaatgagattaaaaaagagacgggtgagttg
aaaccagaggatgaagtaagtgcagctccagctcagaagctggtgacggagatggggacc
tatgtgacacagagtgccctgagctcctccaggccttcaaaaaaagaagaggacagacca
ccactccgaggattcctaatggatggagacttctttgtagcggcttccttggccacaaca
ctcaccaaattggccctgcgttacgtttcaattgttcaagacaaaaagaaacaaaattca
tttgtagctgaagccatgctgattatggtcacagttcttcacctgggcaagtcctctctg
cccaagaaaccaattacagatgatgatgtggagcgcatctcgttgtgcctgaaggttctg
tcagagtgctcaccacttatgaatgacatttttaacaaggagtgccgcagatccctgtcg
catatgctcaccgtcaggctggaggaggagaagctgtcacagaagaaagaatctgagaaa
cgaaacgtgactgtgcaagcagacgacccgatctccttcatgcaactcacagccaaaaat
gagatgacctctaaggaggaccagtttcagctgagcttgctggctgctatgggtaacact
cagaggaaggaggctgctgacccacttgcatcaaaactcaataaggtcacccagctgact
ggcttctcagacccagtgtacgctgaagcctatgtccatgttaaccagtatgacattgtg
ctggatgtgctggtggtcaaccaaacaagtgacactcttcagaactgcactcttgagttg
gccactttaggggatctcaagttggttgaaaaaccttcccctctaactctggcccctcat
gattttgcaaacataaaggctaatgtcaaggtagcttctactgagaatgggattatattt
ggcaacattgtctatgatgtgtccggagctgctagcgacagaaactgtgttgtcctcagc
gacattcatattgacatcatggattacatccagccagcctcctgcacagatgcagagttc
agacagatgtgggcagagtttgaatgggaaaacaaggtgacagtaaacaccaacatcact
gatctgaatgaatatcttcagcatatccttaagtccactaacatgaagtgtttgactcct
gaaaaggcactctctggtttttgtggcttcatggccgccaacctgtatgctcgctccatc
tttggggaagatgccctggctaatgtcagcatcgagaagcccattcacctggggcctgat
gcaccggtcaccgggcacatacgcattagggccaaaagtcagggaatggcactgagcctc
ggcgataagatcaacctctctcaaaaaaaggctaatatctga
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