Xiphophorus hellerii (green swordtail): 116718967
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Entry
116718967 CDS
T07363
Symbol
lrrc49
Name
(RefSeq) leucine-rich repeat-containing protein 49 isoform X1
KO
K16606
leucine-rich repeat-containing protein 49
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xhe03037
]
116718967 (lrrc49)
04812 Cytoskeleton proteins [BR:
xhe04812
]
116718967 (lrrc49)
Cilium and associated proteins [BR:
xhe03037
]
Primary cilia and associated proteins
Tubulin polyglutamylase and associated proteins
116718967 (lrrc49)
Cytoskeleton proteins [BR:
xhe04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Tubulin modification proteins
Tubulin polyglutamylase complex components
116718967 (lrrc49)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_9
LRR_4
LRR_8
LRR_14
LRR_LRWD1
LRR_NXF1-5
LRR_EndoS
Motif
Other DBs
NCBI-GeneID:
116718967
NCBI-ProteinID:
XP_032417168
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Position
4:complement(9522521..9555194)
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AA seq
792 aa
AA seq
DB search
MESDLTDGKTRRGGRKQHNVSDKCLLLTPMINSCKLHLMTAKTLLARNLQTMSDSQDFNK
QTNISTTQTAGDSNPESELHSNNKTSDNSVQQLVRLSGAAPVSHCPNEARGRLSRMPHSA
EITCHHMCLKHLKPVGSQGFKYRASSGFTCTQITSAASFQRIDLDRRCLEEFPKVGFIEE
LRLLNLQHNLITRIPHLLHLQQLTVLNLHDNHISDMNGIENLSSLRVLTLGKNRIHKICC
LERLYKLSILDLHDNQIRKIESISHLSELQVLNLSCNRISSVENLQGLSSLTELNLQYNC
ISVVTEVDRLAGLQRLFLSCNNIHSFDQLACLGESQSISELTLDGNPVALETWYKQAVLR
CVLHLRQLDMKRITDEDRRMAGVLTRKEEEKKKESHKQTIHKEKRRLAIRNAAQQWEGVK
ACLELPPTNGSKEDASPENSPAHSPAQTNGLAQETSPEEPRRISPGSGPERPSGGTENRL
RTNSRPNSPRDPKLVETGSGNVQSLSLSDSHLAELDGDTLRLFGLGALEALERGWGVQTA
GAVTVITFRFINYDAIVPTLPRIRVKFPNLSHLIFLETNISRLPQLAALAQVRRLDQLTI
HPEGNPVVGLALWRSFIIYRLYHFNLQKINGQEVTMNDVIAAERVFGTLGHIAATETPRC
RLLLLLEESRKRQLQFLLEGRGRRAGLSPEELRDNGKLLGEGLSRALFNYPSRDCNAESP
EEGTVESSERAAVIEQYLQELVKRASDTNLKGEALHKLWPSMFAEMVRDCVLEMRDRGAF
RQASLAKLTETK
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggagtccgacctgactgacgggaaaactagacgcggtggtagaaaacagcacaacgtc
agcgacaaatgcctactacttactcctatgatcaacagctgcaagttgcacctgatgaca
gccaaaacactgttagcgagaaacctgcaaacgatgtctgattctcaagatttcaataaa
caaacaaacatcagtaccacacaaacagctggtgattctaacccagaaagtgagttacat
tccaacaataaaaccagtgacaactctgtccagcagttagtacggctatctggtgctgct
ccagtttctcattgtccaaatgaagctagaggcagattaagcagaatgcctcacagtgca
gagatcacttgccatcacatgtgcctaaagcatctcaagccagtaggttctcaagggttt
aagtacagagcttcttcaggtttcacctgcacccaaataacttctgctgccagttttcaa
cgcatagacttggacaggcgttgtctggaggaattccctaaagtgggttttattgaagaa
ctccgacttctcaacctgcagcacaatctaattaccaggattccgcatttgttgcatctg
cagcagctcaccgtcttgaacttacatgataatcacatctctgatatgaatggtattgaa
aatctcagctctctccgggttctgacgctgggaaagaacagaattcataaaatttgctgc
ttggaacgcttatacaaactgagtatcctggatttgcatgacaatcagatcaggaagata
gagagtatatctcacctgagtgaactccaagttctgaacctgtcctgtaatcgcatctca
agtgtggagaatttgcagggcctcagctcgttgactgaactcaacctgcagtacaattgc
atctctgtggtgactgaggtggaccgcctggccggcttgcagcgtctctttctcagctgc
aacaacatccacagttttgatcagctagcctgccttggagagtcacagtccatttctgag
ctcaccctggatgggaatcctgtagccctggagacatggtacaagcaggccgtcctgcgc
tgtgtgcttcacctgagacagctggacatgaagcgcatcacagacgaggatcggcgcatg
gcaggtgtattgactcgaaaagaggaagaaaagaaaaaggagagtcacaagcagacaatt
cataaggagaagcgtcgtctagcgatccgtaatgcggcccagcagtgggagggtgtcaaa
gcctgcttggagctgcctccaacaaatggctctaaggaggacgctagtccagaaaacagt
cctgctcacagccctgcgcagaccaatggccttgcacaggagacgtctccagaggaacca
agacggataagtccaggttcaggaccagaacgaccatcaggcggaacagaaaacagactc
cgcaccaacagccgacctaacagccctcgagatccaaaacttgtggagacagggagtggc
aacgttcagagcttgtccttgtctgacagtcatctggcggagcttgatggagacaccctg
cgtttatttggacttggagccctggaggccctggagagaggctggggtgttcagactgct
ggtgctgtcaccgtcatcaccttccgcttcattaactatgatgccatcgttcccacactt
cctaggataagagtcaagttcccaaatctgtcgcacctgatatttctggaaaccaacatc
agccgtctcccccagctcgctgctctggctcaggtgaggcgtctggaccaactgaccatt
catccagaaggaaacccagtggtcggtctggctttgtggcgctcattcatcatctatcgt
ctctaccacttcaaccttcaaaaaatcaatggccaggaggtgaccatgaatgatgtaatt
gctgcagagcgtgtatttgggacactgggtcacatagcagccaccgaaaccccacgttgc
cggctcctattgctgctagaagagtccaggaaaaggcagctgcagttcttgttggaggga
cgtggtcggcgggcggggctgagtccggaggagcttcgggataatgggaagctcctgggt
gaaggcctgagcagagcgctctttaactatccaagcagagactgtaatgcagagagccct
gaggagggcaccgtggagtcatcagagcgtgccgccgtgatagaacaatacctccaggag
ttggtcaaaagagcgtcagacaccaatctgaagggtgaggctttacacaagctctggcca
tccatgtttgcagagatggtgagagactgcgtgttggagatgagggacagaggggccttc
cgccaagccagtcttgcaaagctcactgagaccaagtga
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