Xiphophorus hellerii (green swordtail): 116719004
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Entry
116719004 CDS
T07363
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xhe03036
]
116719004 (chd9)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
116719004 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_Hrp3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
116719004
NCBI-ProteinID:
XP_032417227
LinkDB
All DBs
Position
4:8066899..8154662
Genome browser
AA seq
3004 aa
AA seq
DB search
MDFFDDPNLFVGGLDGLDEDGFHSAPSLVDELNLSAGFEPLQVEVLGPGKHQEMMPPVSS
QQAVPSYNQPMVHYTGVKAENPLGQVFSGSLTTGCDVGPEQHGQYHSATISQVPQPNGLY
CSTGSPMWGNQDQNGNMFHHVSQQQQQQQQLCHQQLHNQQLHGRQHTQQQHRSGHQAEQQ
QRMRQQLQRQHSHQQQLLNQHQQITTASVCLQQQQHPTFSFLQGGQSSSQQQIHHSQHQL
PVRESQFHSRSLPGKPFLERQNASLRGACLQTRQQQGSYQLVRGGPTFSGSGLEDSHLSF
PIHPSSAVHSLPACSVNSAHAYQAAEFPAYPGEPEIPSLSQQSSCRPITTTPITTTVPRL
PGTVCQFQSTAHVSQLHSGTTVSQADECPFRALHCSGETQAVCKSSELFGESVSCYPSMT
NHLPSEQQISCGVINTNGYQAFGDNIMPSEAQDGDLEALDPPDLLPDLLPQLEDAFRQQD
ESSCSWFDSSQKKGHENRKSTAIECKEEKPRKNPNGPSSQVRVLSPPVKSSSSSSSSSSS
SSSSSSSSSSEKRVPRRTHHQMESNLHEKQEKANRIISEAIAKARQRGEKNIPRVMSPES
FPTSSSQYKSHREREHKGNGKARTKEKSSRKACIVPSSKPKQKTKIGKIVIKIGKRKKRK
PESSEEESDDDPPPRHSSKDDDSKRRSNRQVKRKKYAEELEARLSDEDVKVIVKAKKSNT
AASKDPAVQLFVENPTEEDAAIVDKIMSSRIMKKEVSPGVMVEVEEFFVKYKNYSYLHCE
WATEQHLEKDKRIQQKIKRFKMKQAQRALFFTDMDEEPFNPDYVEVDRVLEVSYCEDKDT
GEEVVYYLVKWCSLPYEDSTWELKDDVDQSKIEEFERLQAVKPDSRRVERPPANLWKKRE
QSREYRNGNTLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEIHRIGIKG
PFLIIAPLSTIANWEREFHTWTHLNVIVYHGSMISRQMLQQYEMYFRDTQGRVIRGAYKF
QAVITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLMNLEHKVLLTGTPL
QNTVEELFSLLHFLEPARFPSENNFMQEFGDLKTEEQVQKLQGILKPMMLRRLKEDVEKK
LAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGAGQSNMPNLVNTMMELRKCCNHPYL
IKGAEEKILEDFREVHNPTAADFHLQAMVQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVR
CLDILEDYLIQKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA
ADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKA
VLQSMSGRDNSLGGGTGGGAAQQQLSKKEIEDLLRRGAYGAIMDEEDEGAKFCEEDIDQI
LQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKADIDMDMVNGRNS
LVIDTPRVRKQTRPFSATKDELAELSEGESDSDETKPKLRRNDRLNSYGRTECFRVEKNL
LVYGWGRWKDILNHGRFKKQLTEWDVESICRALLAYCLVHYRGDDKIKSFMWDLIAPTED
GRTKELQNHLGLSAPVPRGRKGKKMKTQTSSFDIHKAEWLRKHNPEHMLQDDGYKKHLKH
HCNKVLLRVRMLYYLKQEVIGSQAQKVLDGGDSSEVKIWVPDPDHSELPALWWDAVADKC
LLLGVFKHGYEKYNTIRADPTLCFLDRVGRPDEKAIAAEQRGNDFMDGDVDDPEYKPAPA
LLKDDMEDDASSPGDLVVSDNAGDAPPVTEGQTSYWPSPSVLTARLRRLITASQRYTKSR
QILHIHQTQSQSQPQQAMMLSAPICPLPPALKDTLNPKMAAKIERQQRWTRREEADFYRV
VSTFGVVFDPNLGRFDWTKFRAMARLHKKTDESLQKYLCAFTAMCRRVCRLPPKDGDSAV
DPSLTIQPITEERASRTLYRVELLRQVREQVLRHPLLFERLSLCQMSSDLPVWWEAGTHD
RDLLIGAAKHGVSRTDYHILRDPDLCFMAAQRNYSQVKAAQQQQQRTTTPLLLPQYQAVG
PLPTGSPLPPPTQRDPDPCGIVPKVEAASEEEEIKERQGESWSPPQPPATPTGLEEKPVS
VAKDSERQMVAARTKPLTPNSTERKPKKASKRGRREARRGSESDSDGSSSSSSSRSSSSS
SSSSSSSSHSGSSSSSSSSSCSSGSSSSSSSSSSSSDDSESEGEEAKKKVPVTTSVKGFD
EDSVASLSTTQDEMQDSHVSENGVTNNSTHPFQGGGYMLAASYWPKDRVIINRLDSICQA
VLKGKWPGHRRVYEPGSTVASFYTTKLLDNANSLCEDPSASPQGSKVTKHVAENKEFSVK
LNDQEGGLKLTFQKQGLPIKRPLESEEGPQAQQQYLARLHELQSASDTGLADITKPQSSF
QTVTPGVSGQMRLNGVMDGQPVVKKRRGRRKNVEGIELLFMNKNKSSATPDPVAPGWGGI
GQVGITGAAAQMNSSQIPADTDTRIPVINLKDGTRLAGDDAPMRKDLDQWLREHPGFVAD
TGAFIPGVGKMQMQFHFQDGRPKQKRHRCRNPNKIDVNSLTGEERVQIINRRNARKIGGA
FAPPLKDLCRFLQENPEYGVPPEWADVVKQSGYLPESMFDRILTGPIVPEEVSRRGRRPK
NPLAKAAVAAAAAAAPSSAPSALGLNSLLANGLLSGMDLGSLQAFQQNLQSLQSLQLTAG
LMGLPPDASNLAASNLAAMFPMMLSGMAGLPNLLGMSSMLGKPTQEAAGGSEEKTKGTDS
SGTCEPSNAPSNTSETKGERTEDVNTTPSSTSSSASSATVTPSASAASAATSHPLSLNPL
LLSSMLYPGMLLTPGLNLPVSATQLQSSNSDPSTFPSAAAAPLPSAPAASHSSLTEMEQP
SGKEEEEEDEAPEEALDDEEEDDEESAEPRENSGPEGSAKAESSSSESGSSSSSSDDSDS
SDED
NT seq
9015 nt
NT seq
+upstream
nt +downstream
nt
atggacttttttgacgatcccaacctctttgtcgggggtttggatgggctagatgaagat
ggtttccattcagcaccttcgcttgtggatgagctcaatctcagtgctggttttgaaccc
cttcaagtggaggtacttggcccagggaagcatcaagaaatgatgccaccagtctcttcc
caacaagctgtgcccagttacaaccagccgatggttcattatactggcgttaaggcagag
aatcccctggggcaggtattttctggttctctaaccacaggttgtgacgtgggtcctgag
caacatggccagtaccatagtgccaccattagccaagtacctcaacccaacgggctgtac
tgcagtactggaagcccaatgtggggcaaccaagaccaaaatgggaacatgtttcaccat
gtatctcaacagcagcagcagcaacaacaactttgtcatcagcaactgcacaaccagcaa
cttcatggcagacaacatactcagcagcagcaccgttctggtcatcaagctgagcagcaa
cagagaatgcgacaacagctccaacgacagcacagtcatcagcaacagctgctaaaccag
catcaacagattaccacagcgagtgtttgcctgcagcaacagcagcatcccacattctcc
tttctccagggaggtcagtccagcagccagcagcagatacaccattctcagcatcaacta
cctgtaagagaatcccagtttcattccaggagtcttccaggtaaaccttttttggaacgt
cagaatgcctctttgcgtggggcctgcttgcaaacacgtcagcagcaggggagctaccag
ttggtcaggggaggtccgaccttctccggatcaggactcgaggactctcacctttcattc
cccatacatccatcatctgcagtacactccttgcctgcatgctctgtcaattcagctcat
gcttaccaagcggcggagttccctgcctaccctggagagccagaaatacccagtctcagt
cagcagtcttcatgtaggcccatcactactacaccaattactactacagtgcctaggctg
cctgggacagtatgccagttccagtccacagcacacgtgagtcagctgcactctggaaca
acggttagccaggcagacgagtgtcccttcagagccttacactgttctggagaaacccag
gcagtctgcaaatcatcagagctgttcggcgagtcagtgagttgctatccaagcatgaca
aaccacctaccctctgagcagcagatcagctgcggggttattaacactaatgggtaccaa
gcttttggagacaatattatgccatcagaggcgcaggatggagacttggaagccctggat
cctcctgacctcctgcctgatctgctcccccagctggaggacgctttcaggcagcaggac
gaatccagctgttcttggtttgattccagtcagaagaaagggcacgaaaacaggaaatca
acagctatcgaatgcaaagaggagaagcctcgaaaaaaccccaatggtcccagtagccag
gtgcgggtcctcagtccccctgtgaagagcagctcttcctcctcctcttcctcttcttct
tcgtcttcatcctcatccagctcctcatcggagaagagggtgccacggaggacacaccat
cagatggagtcaaatctgcatgagaagcaagagaaggccaataggataatatcagaagcc
atcgccaaggcccgacagcgaggagagaagaacatcccacgagttatgagcccggagagc
ttccccacctcttcttctcagtacaagagccaccgtgagcgcgagcacaagggaaacggg
aaggcccggaccaaagagaaatcctccaggaaggcctgcattgtaccctcctcaaagccc
aagcaaaagaccaagatcgggaaaattgtcatcaagattggaaaaaggaaaaagcgaaag
ccagagtcgtcagaggaggagtcggatgatgatcccccgcctcgtcactcttctaaggat
gatgattctaagaggcggtcgaaccgtcaggtgaagagaaagaagtatgctgaagagctg
gaggccagattgtcagatgaggatgtcaaagtcattgtgaaagccaagaaaagcaacact
gctgcatccaaggaccctgctgttcagctgtttgttgagaatccgacagaggaggatgct
gctattgttgacaaaatcatgtcttctcgtatcatgaagaaggaggtatctccaggggta
atggtagaagtggaagagttttttgtaaaatacaaaaactactcctacctccactgtgaa
tgggccactgagcagcacctagaaaaggacaagaggattcagcagaagatcaaacgcttc
aagatgaaacaagcacagagggcgctcttcttcacagatatggatgaggaacctttcaac
ccagactatgtggaagtcgacagagtgctcgaagtgtcgtactgcgaggacaaagacaca
ggagaggaagtggtgtactacctggtgaagtggtgttctctgccttatgaggacagcacg
tgggagctgaaggacgacgtcgatcagagcaagattgaagagtttgaacggctgcaggca
gtcaagccagactcgcgcagagtggagcggcctccagccaacctttggaagaagagggag
cagtcgagggagtacaggaatggcaacactctcagggattaccagctggagggggtcaac
tggcttcttttcaactggtacaacaggcgcaactgcatcttggctgacgagatgggcctg
ggaaagaccatccagtcaatcacattcctggaagagatccatcgtatcggcatcaaaggg
ccctttctcatcatcgcccccctctctactattgcaaactgggagcgagagtttcatacc
tggactcaccttaatgtcatcgtttaccatggcagcatgatcagcaggcagatgctgcag
cagtatgagatgtatttcagagatacacagggtcgggtgattcgaggtgcctacaagttc
caagctgtgatcaccacgtttgagatgatcctgggcggctgtcccgagctcaatgccatc
gagtggcgctgtgtgatcatcgacgaggcccatcgtcttaagaacaagaactgcaagctg
cttgagggcttcaaactcatgaacctggagcacaaggtcctactgacgggtacgcctctg
caaaacacagtggaggagctttttagtctcctccacttcctggagccggcacgcttcccc
tctgagaacaacttcatgcaggagtttggtgacctcaagacagaggagcaggtgcaaaag
cttcagggcatcctgaagcccatgatgctgcgtcgtttgaaagaagacgtggagaagaag
ctggctcccaaagaggaaaccatcattgaggtggagctcaccaatatccagaaaaaatac
tatcgcgccatcctggagaagaatttctccttcctggctaaaggagccggccagtcaaat
atgcccaacctggtcaacaccatgatggaattaagaaagtgttgtaaccacccctacctc
ataaaaggggcggaagagaagatcctagaggatttcagggaagtacacaatcccactgcc
gctgactttcacctgcaggcgatggtgcagtctgctggaaagttggtcctcattgacaaa
ctgctgcccaagatgaaagcaggaggacataaggtgctcatcttctcccaaatggtgcgc
tgtctggatatcttggaagactacctcattcagaaaaggtacttgtatgagcgcatcgat
ggacgcgttcgtggaaacctgcgacaggctgccattgaccgcttcagtaagcccgactcg
gaccgctttgttttccttctgtgtacgagagctggaggcctaggcatcaacctcaccgca
gcagacacctgcatcatctttgactctgactggaaccctcaaaacgacctgcaggctcag
gctcgctgtcatcgaatcggtcagaacaaggcggtgaaggtgtaccgtcttatcaccaga
aactcgtacgagcgagaaatgttcgaccgcgccagcctgaagctgggactggacaaagca
gtgctgcagagcatgagtggccgtgacaacagtcttggaggaggcacgggaggaggggct
gcacagcagcagttgtccaagaaagagattgaggatctgttgcgacgtggcgcctatgga
gccatcatggatgaggaagacgaaggggccaaattctgtgaggaggacattgaccagatc
ctccagcgtaggacgaagaccatcacaattgagtctgagggacgaggatccacttttgcc
aaggccagctttgtagcatctggaaaccgcacagacatctctctggatgaccccaatttc
tgggacaagtgggccaagaaagctgacattgatatggatatggtcaatggcagaaacagc
ttagtgatcgacactcctcgtgtaagaaagcagacgagacctttcagtgccaccaaagat
gagttggcagagctgtcagagggtgaaagtgacagtgatgagaccaagcctaagctcaga
agaaacgatcgcctcaacagttacggccgcacagagtgcttcagagtggagaagaatttg
cttgtatatggatggggtcgatggaaagacatcctcaaccacggtcgctttaagaagcag
ctgactgagtgggacgtggagtccatctgcagagcccttctagcttactgcctggtccat
tatcggggcgatgacaaaataaagagcttcatgtgggacctcatagcgccgactgaagac
gggcgcaccaaggagctgcagaatcacctcggcctgtctgccccggtacctaggggcaga
aaaggcaaaaagatgaagacccaaactagttcttttgacatccacaaagctgagtggctc
cggaaacacaaccctgagcacatgctgcaggatgacggctacaagaagcatctgaaacat
cattgcaacaaggtgctgctccgggtcagaatgctctactacctgaaacaagaggtgata
ggaagtcaggcccagaaggtgctagacggcggggactccagtgaggtaaagatctgggtg
ccagatccggaccactcagagctgccagccctttggtgggatgcagtcgctgataaatgt
ctgctgctgggtgtctttaagcatgggtatgagaagtacaacactattcgtgcagaccca
actctgtgcttcttagaccgcgtcgggcgaccggatgagaaggccatcgctgcagagcag
agaggcaatgacttcatggatggggatgtggatgatccagagtacaagcctgctccagct
cttctgaaagacgacatggaggatgacgcctcttcccctggagatttggttgtctctgat
aatgctggagacgcacctccagtaacggaaggccagacttcctactggccctccccctca
gtgttgacggccagactgagacgactgatcacggcgtctcagcgctacaccaagagccgg
cagatcctacacatccaccagactcagtcccagtctcaaccccagcaggccatgatgctc
tctgcccccatctgcccgctgccccccgcactcaaagacacactcaaccccaagatggct
gcaaagattgaacgccaacagaggtggacaaggcgagaagaggccgatttttatcgggtt
gtgtccacttttggtgtcgtttttgacccgaacctcgggcgatttgactggaccaagttc
agggccatggcccggctgcacaagaaaacggacgagagcctgcagaaatacctctgcgcc
ttcactgctatgtgtagacgagtgtgtcgcctgccacccaaagatggagattctgcggtg
gatccatccctgaccatccagccaatcacagaagagcgagcctctcgtaccctgtacaga
gtagagctgcttcgccaggtcagggaacaagtcctcagacatccactgctgtttgaacgt
ctgtccctgtgccagatgagctccgacttacccgtgtggtgggaggccggaactcacgac
cgcgacctgctgatcggcgccgcaaagcacggcgtcagtcggacggattaccacattctg
agagaccccgatctgtgcttcatggcagcccaacgcaactacagccaggtgaaagccgca
cagcagcagcagcaacgcacaacaaccccgctcctgctccctcagtaccaggctgtcgga
cccttaccgacgggctccccgctgcccccgcccacccagagagacccggatccctgtggg
attgtgcctaaagtggaagcagcctcagaagaagaggagattaaagaaagacagggggag
agctggagccctccgcagcctccagcgactccgacaggcctggaggagaagcccgtttct
gtggcgaaggacagcgagaggcagatggtggcggcgcgcaccaagccgctcacacccaac
tccacagaaaggaaacccaagaaggcaagcaaaaggggccgcagggaggcccggcgaggc
tctgagtcagactcagacggttcctcctcgagctcttcatcacgatcttcttcatcctca
tcttcatcttcttcatcctcctcacattccgggtccagctcttcctcttcctcctcgtct
tgctcctctggctcttcgtcatcatcgtcgtcctcctcctcctcttctgacgacagtgaa
agcgagggagaggaagcaaagaagaaagtgcctgtgacaacaagtgttaagggttttgat
gaggacagcgtggcgtccctgagcactacacaggacgaaatgcaagactcacatgtgtct
gagaatggagtcacaaacaactccacccatcctttccagggtggaggctacatgttggct
gcatcgtactggcctaaggaccgtgtgataatcaaccgtctggacagcatctgccaggcc
gtcctcaagggcaagtggcctggccatcgtcgggtttatgagcccggcagcacggttgcc
tccttctataccaccaaactgctggacaacgccaacagcctctgcgaggacccctctgcc
tctccacaggggtcaaaggtgaccaagcatgttgcagaaaacaaggagttctcagtaaag
ctcaatgatcaggaaggaggtctgaagctgaccttccagaagcagggcttgcctataaag
agacccctagagtctgaggagggcccccaggcccagcaacagtatctggcccggcttcat
gagttgcagagcgcttcggacacaggcctggcagacataaccaagcctcaaagctctttc
cagactgttactccaggtgttagtggtcagatgaggttgaacggagtaatggacggccag
ccagtggttaagaagcgacgggggagaaggaagaatgtagaaggaattgaactgctcttc
atgaacaagaataaatcatctgctactcctgacccggtggctccaggatggggtggaatc
ggccaagtgggcatcacaggagctgctgcacaaatgaactccagtcagatccctgcagac
acagacaccaggatccccgtcatcaacctgaaggacggcacccgactggcaggcgacgac
gctcccatgaggaaagacctagaccagtggcttagggaacacccaggctttgtcgcagat
acaggagcttttatcccgggagtaggtaagatgcagatgcagttccacttccaagatggc
cgacccaagcagaagcggcaccgctgcaggaaccctaacaagatcgacgtcaacagttta
actggcgaggaaagagtccagatcataaacaggagaaatgctcgcaagatcggtggagct
tttgctcctcctctgaaggatctgtgccggttccttcaggaaaatccagagtatggggtc
ccacctgaatgggctgacgtggttaaacagtcgggttatctccctgagagcatgtttgac
cggatcctgactggacccatcgttcccgaggaggtgagccgacgaggacgccgaccgaag
aatcccctggccaaggcagcggtggctgcggcggctgcagcggcacccagctctgcacct
tccgccctgggtttaaattccctgctggctaacggtctcctctctggcatggacctcggc
agtctgcaggccttccagcaaaacctccaaagtttacagtccctgcagctcactgcaggc
ctcatgggactgccgccagatgccagcaacctggccgcgagcaatcttgccgccatgttt
cccatgatgctttctggtatggccggattgccaaacctgctcggcatgagcagcatgctt
ggaaagcctactcaggaagctgcgggaggttccgaagagaagacgaagggaaccgacagc
agcggaacatgcgagccgtctaatgccccctctaacacttcggaaaccaaaggagaaagg
acagaggacgtaaacacgactccttcctccacttccagttctgcttcctctgccaccgtc
acaccaagtgcttcagctgcctctgcagccaccagtcacccactctctcttaaccccttg
ttactctccagtatgctttacccagggatgcttctcactccaggccttaaccttcctgtg
tctgccacacagctgcagagctcaaacagtgacccttcaacctttccatctgctgctgct
gctcctcttccgtctgcccccgcagcctcccattcctccctgactgaaatggagcagccg
tcaggaaaggaggaagaggaggaggacgaggcgcctgaggaggctttggacgacgaggaa
gaggatgacgaggaatctgcagaaccgagagaaaacagcggccctgaaggttcagcaaaa
gccgagtcatcttcgtcggagtccgggagctcgtcctcatcctctgatgattcggactcc
agtgacgaggactga
DBGET
integrated database retrieval system
