Xiphophorus hellerii (green swordtail): 116719127
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Entry
116719127 CDS
T07363
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
116719127 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xhe01009
]
116719127 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xhe04515
]
116719127 (pcdh20)
Protein phosphatases and associated proteins [BR:
xhe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116719127 (pcdh20)
Cell adhesion molecules [BR:
xhe04515
]
Cadherins
Protocadherins
116719127 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
DUF6899
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
116719127
NCBI-ProteinID:
XP_032417411
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Position
4:complement(22207653..22211877)
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AA seq
887 aa
AA seq
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MFRSRYSSKRDSIWGFYILMLYTTPLSCLANFSQAKELIYKIKEGLPKGTFIGAIGVDLR
LDFTVEPPFLFSLTQKKVSEQYVNINNTTGELYTSTAEIDRETLCPYSSEEQGCFLSLDV
FVLPQQYFQLVKVKLLIEDVNDNRPKFPTDEICMSIPENTPINGRFAVELSAFDPDLGIY
GVQTYWLVNDFGVFTLDVEENDGGELTPFLIVTDFLDRETQAEYVTDIIAEDGGTPPLLG
AATLKIAITDVNDNCPKFTESQINVTLHGNTSKGAQLARLHAFDPDLGANAQISYAYSER
VPKNTRSLFHLDKITGGIKLARKLDFVTTTFYKLTVLANGPGCIPAVATVTIYIIKVVAG
PPAVIPRYIAPEKDGVVTLKESEPAFSPIAFFTIKNMDKSQKVDCYLEGFGPFRLVPYQQ
LENEYLLETTETLDYERTQEYELILVANNTQDLIIKTFLKVQVLDENDNAPVFQQSLVEI
SIEENNSPNTFLTQLQASDPDSESRGEVIYILGGDTPGIFVVDRLTGVLTVATSLDREEK
EKYRFIVRAVDQGTPRRESIATVVVTVLDRNDNSPCFINKDFTFFVPENFPGYGEIGVLS
VTDPDAGKNGWVALSILNGSDIFMIDTGRGALRAKTSLDREQQGTYQLWIEAADGGVPAL
SSVTMVTVLLLDVNDNPPVVLFPQSNQSYMLVLPNTTPGTSIAEVYAVDKDTGMNAVIAY
SIIKRKGGEPGSFAIDPETGNITLKRELSNRGLYSLLVKVSDHGQPEPLYSTVMVNFFVN
ETVSNESYIQSLLTRDVDIEVEEKPWYISQMTDGPERYELFPCRPILISLSVACLGLFSL
VLILISYICCKRFKKIRKKRSEVEVPLKLKNGSTNFLNRKLRQMSNI
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgttcaggagcaggtactccagcaaaagagacagcatatggggtttctacatccttatg
ttgtacacaacccccctctcctgtctggcaaatttcagtcaagcaaaagagctcatctat
aagataaaggagggattacccaaggggactttcatcggggctattggagtggacttacgt
ttggatttcacagttgagcccccctttttattcagtctcactcaaaagaaggtcagtgag
cagtatgtgaacataaataatactactggggagctttacacatccactgctgagattgac
agggagaccctgtgtccttacagctctgaggagcagggatgtttcctttcactggacgtg
tttgtgttgcctcagcagtactttcagcttgtcaaagtaaagcttttaattgaagacgtg
aacgacaacaggccaaagttccccacagatgaaatctgcatgtctatcccagaaaacaca
ccaataaatggccgttttgcagtggaactgtctgcttttgacccggacctggggatttat
ggagtgcagacctactggctggttaacgactttggtgtgttcactctggatgtagaggag
aatgatggaggtgagctgacaccattcctcattgtgacagactttttagacagagagacg
caagctgaatatgttacagatatcattgcagaagacggagggacccctccccttcttgga
gcagcaactttaaaaattgccatcacagatgtaaatgacaactgccctaaatttacagag
tcacaaattaatgtcactctgcacgggaataccagcaaaggggcacagttggcacgtttg
catgcttttgaccctgaccttggtgctaatgcacagatcagctacgcttacagtgaacgt
gtgccaaagaacaccaggagcttgttccatttggacaaaattacaggggggatcaagcta
gccaggaaactagactttgtcacaaccacattttacaaattgactgttctggccaatgga
cctggctgcatccctgctgttgcaactgtaactatctatatcatcaaagtggttgcagga
ccccctgctgtcatacctagatatattgcacccgagaaggatggagtggtgacattaaag
gagtctgagccagctttttctccaattgcattttttactatcaaaaatatggacaaaagc
caaaaggtggactgttatttggaaggctttggtcccttcaggcttgtcccataccaacag
ttagagaatgagtatttactagaaacaacagagacattggactatgagaggactcaggaa
tatgagctaattttggttgctaacaatactcaagatctaatcataaagacgttcctaaag
gtgcaggttttggatgagaacgacaatgcaccagtgtttcaacagtctttggtggaaata
tcaattgaggaaaataattcaccaaatacatttctaactcagctgcaagcctcagaccca
gacagtgaaagtcgaggggaggtaatctacatccttggtggtgatactcctgggattttt
gttgtggatcgtctgacgggggttctgactgttgcgacatctcttgacagagaggaaaaa
gaaaaatatcggttcatagttagagcagtagatcaggggacacccaggagggagtcaatt
gctacggtggtggtgactgtactggatcgcaatgacaacagtccatgtttcattaacaag
gattttaccttctttgtgccagagaactttcctgggtatggggaaattggtgtcctctct
gtgacggatcctgatgctggtaagaatgggtgggtagccctgtccatccttaatggaagt
gacatttttatgatagacactggccgaggtgcactgagggccaagacatccctagaccgt
gagcagcaaggaacgtaccagctgtggattgaggccgctgatggtggggtgccagcgctt
tcctctgttactatggtgactgttctcttgttggatgtgaatgacaacccgccagttgtt
cttttccctcagtccaaccagtcctacatgctggtactacctaatacaacacctgggaca
tcaatagcagaagtatacgcagtggacaaagacacaggaatgaatgctgtgattgcctac
agtatcattaaaaggaaagggggtgagccagggtcatttgccatcgacccagaaacagga
aacataacattgaagagagagctcagcaacagggggctttacagccttctagtgaaagtt
agtgatcacggtcaacctgaaccgctttactcaacggtcatggttaacttctttgtcaat
gaaacagtgagtaatgagagttacatccaaagtctgctgaccagagacgttgacatagaa
gttgaagagaagccctggtacatcagtcagatgacagatgggccagagaggtatgagctg
ttcccctgtcggcccatcctcatcagtctttcagtggcgtgtctcgggttgttttccctg
gttctcatattgatatcatacatatgttgcaagagattcaaaaagataaggaagaaaaga
tcagaagtggaagtacctttaaaattgaaaaatggctcaacaaactttctgaacagaaaa
ctcaggcagatgtcaaacatctga
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