Xiphophorus hellerii (green swordtail): 116719187
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Entry
116719187 CDS
T07363
Name
(RefSeq) homeobox-containing protein 1-like isoform X1
KO
K24885
homeobox-containing protein 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116719187
Transcription factors [BR:
xhe03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
116719187
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
DUF494
HTH_31
HTH_26
CUT
AbiJ_NTD3
HTH_24
HTH_37
SR-25
Motif
Other DBs
NCBI-GeneID:
116719187
NCBI-ProteinID:
XP_032417512
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Position
4:complement(29278402..29293143)
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AA seq
500 aa
AA seq
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MFQQSEEPRFTIEQIDLLQRLRRTGITQVEVLHALDTLDHLDQQNGHKQARKASYLPPSS
SLSSSNSVSASSSTTCASTQTVFPDNRLSLSPGNNLDTSSPPLPVPTASPVVVQNGLGAV
ANGKLSPPRFPLVGGSVTAPAFGFEASEEDLDLDDKVEFLMRRDSSVIKEEIKSFLANRR
ISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFFRWYQLEKTNPGATLAMRAAPLAL
EDMMDWHQTPPPFASAPGGFRLRRGSRFTWRKECLAVMESYFSDNQYPDEAKREEIATAC
NAVIQKPGKKLSDLERVTSLKVYNWFANRRKDIKRRANIEAAILESHGIEVESPGGQSNG
DEVDGNDFPDQGCDVSLFDKRASARQFGFSRADLSSPTQVPPQLPSWFSALARGGQRGAS
LIGRSLLSGAGSQAEGSRMTGASWSPPSPSLQDDPGLHVVLSEPQDPATSEKTAAGRGSP
ASANQADAGNQIKTESVDDD
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgttccagcagagtgaggagcctcgcttcaccatcgaacagatcgatctcctccagagg
ctccgacggaccggcattactcaggtggaggtcctccacgccctggacacgctcgatcac
ctggaccaacagaatggccacaagcaggcccgcaaagcttcctacctgccgccctcgtct
tccttgtcttcctccaactccgtctctgcctcttcgtccaccacttgcgcctccactcag
acggtttttccggacaaccgactctccctgtcacctggcaacaacttggacacctcctcc
ccgcctctgccggtcccgacagcctcgccggttgttgtccagaatggacttggcgccgtc
gccaacgggaagctttctccgccgcggtttcctctggtcggaggcagcgtgactgcaccg
gcctttgggtttgaggccagtgaggaagacttggatctggatgataaagtggagttcttg
atgaggagggacagcagtgtgatcaaagaggagatcaagtccttcctggcgaacagacgg
atctcccaggccgtggttgctcaggtaacagggatcagtcagagtcggatctcccactgg
ctcctccagcaggggtcggacctcagcgagcagaagaaacgggccttctttcgctggtat
cagctggagaagacgaaccccggcgccactctggccatgcgggcggccccgctggctctg
gaggatatgatggactggcaccagacccccccaccgttcgcctcggcccctgggggcttc
cggctgagacggggcagcagattcacctggaggaaggagtgtctggctgtcatggagagc
tacttcagtgataaccagtatcccgacgaagcaaagagggaggagattgccactgcctgc
aatgctgtcattcaaaaaccaggaaagaagctgtctgatttggagagagttacgtctctc
aaggtctacaactggttcgccaaccgccgtaaagacatcaagaggcgtgccaacatagaa
gcagccatcttagagagccatggcatcgaggtcgaaagtccaggaggccagtccaacggt
gacgaggtggacggcaacgacttccctgaccagggttgcgacgtgtccctgtttgacaag
agagcttcggccaggcagtttggctttagtcgagctgacctgtcctctcccacccaggtt
ccgccgcagctgcccagctggttctccgccctggccaggggaggccagcggggcgcctcg
ctgatcggtcgctccctcctgtcgggggcgggctctcaggcagaaggatccagaatgacg
ggcgcgtcctggtcccccccgtccccgtccctccaggacgaccccggcctccacgtcgtg
ctctccgaaccgcaggacccggcgacgtcggagaagacggcggccggccgcggcagcccg
gcctcagccaatcaggcggacgcggggaatcagatcaagacggaaagcgtggatgacgac
tga
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