Xiphophorus hellerii (green swordtail): 116719194
Help
Entry
116719194 CDS
T07363
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116719194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116719194
03036 Chromosome and associated proteins [BR:
xhe03036
]
116719194
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116719194
Coactivators
SAGA/TFTC/STAGA complex
116719194
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
116719194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
116719194
NCBI-ProteinID:
XP_032417526
LinkDB
All DBs
Position
4:9037823..9138497
Genome browser
AA seq
1072 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESQLSGQSNSAGKADENGGAGSVAPANHHLGK
TLPAPVSTTTLEQQQQPGRWNKPEMRQEVNSKDASPDKTVTSPSLSGSSSFGEPPSTSAG
SVNATSSGIQSHGASITPLTASGVSTLASPQDSISTTSSRSANVSQCTGEAPAEASAPRK
RVATPRRSPSARIKSLNGAAVTTRRSSITAVTDSSIIGSVDPGATPPNSTRSAINTSTFT
LSNANLPVGQSAIALDRGTPTIALHRLPSHIVASIAQNGNGTSVSALVQQGARIEPATSS
SPTGDLSKAATDTGASKTDDCQSNIVTQSQVGSVSSVINTLLPSASCAITPATTTTAAPT
TTTVTQPLSSATTAVCATAIATTSVCGTVQTTAVTSTMSIVRPTAPSPTPVVATPTLSQP
RPGVPTPQRIVAPQLIVRPSQQQTTIQLPPGFTIPQGMVLVRTELGQLVLVPQQALAQAQ
AQAQAQNNISPRPTAPTTGTSFRVTTPQQSPATSQTTRPCPLTPAKMAPSPSPTPSSPAL
QTSSSSSSSSSCPALRPKGPVAPTVAVTAPQQTPMVMTPQAQAQPTSQPAAQTQTSVAAA
PGAPVVSQEMQENVKKCKNFLATLIKLASHNSPSPETSKNVKALVQDLLDAKIEPEEFTS
RLQSELKSSPQPYLVPFLKKSLPALRLSLLNSQQSLTQPLQQGVKPAAGGTPPAMVAGPA
VRIRHPNSVSTTAGASVLPAGTIGHAAAMGVKTGGTVSGPVRMPMVITQSIRPQGTIGKG
AIIQAGKSPMGLPVQISGNQKNKLNDPGGGSFRDDDDINDVASMAGVNLNEESARILATN
SELVGTQIRSCKDEAFLHPGLLHRRILETAKKFGVTEVPMEAVTFISHAAQSRLRTVVQK
VSIIAQHRIDSCKDDECYEQSADVRSQLRFFEQLERIEKQRKDEQEREILLKAAKSRSRQ
EDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKLDSPGATPSGTEVSSSM
AGSPGCSSTPSTSSRQYTRQRITRVNLRDLIFYMEQERETAHSLLLYRALLK
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcctccgaccccctggaagatatgctcttttcagaggtggatgagaaggct
gttagcgacctggtgggctctttggagtctcagctgtctgggcagagcaactccgcgggg
aaagcagacgaaaacggaggcgctggctctgtggcccctgctaaccatcacttaggaaaa
acgctcccagctccagtgagtaccacaacactagaacaacaacaacaacctggacggtgg
aataaacctgagatgcgccaggaggtgaactctaaggacgcaagcccggataaaactgtc
acctctccgtcgctgagcggctcctcttcttttggcgagcctcccagcacttcggctggc
tctgtgaacgccactagcagcggcattcaatcacatggagcatccatcacaccgctgact
gcatctggcgtgtcaactttggcatccccgcaggacagcatcagcaccacatccagtcgg
agcgccaacgtgagccagtgcacaggtgaggcgcccgcggaggccagcgctccgaggaag
cgcgtcgcgacgccgagaaggagcccctccgcgcggataaagagtttgaacggcgcagcg
gtgacgacgagacggagcagcatcacagcagtgaccgacagcagcatcatcggctccgtg
gacccgggcgcaactccgccaaactccactcgatcggccatcaacacttccacgttcact
ctgtccaacgcaaacctccccgtgggtcagtcggctattgctctggaccgggggactccc
accattgccttgcacagactcccgagtcacatcgtagccagtattgcccagaacggcaac
gggaccagcgtttcggcgctggtccagcagggtgctcggatagagcccgccacatcctca
tctcccacgggagatctcagcaaggcggccacggacaccggagcttccaaaacagacgac
tgtcagtccaatattgtaacgcaaagccaggttggtagtgtgagctctgtaataaacact
ctattaccgtctgcttcctgcgctatcacaccagcaacaaccactacagcagctcctacc
accaccacagtgacccagcctctgagctccgctacaacagctgtgtgtgccaccgccatt
gcgaccacatctgtctgtggaactgtccagaccacagctgtgacctccaccatgagcata
gtcaggcccacagctccctctccaacacctgtcgtggccacccctacactgtctcaaccc
cgtccaggggtcccaacgcctcagaggatagtagccccccagctgattgtcagaccttca
cagcagcagaccaccattcagcttccccctggctttaccatcccacagggaatggtgctg
gtgcgcactgaattgggccagttggtgttggttcctcagcaggctttggcccaagcccag
gctcaagcccaggcccagaacaacatctccccgagacctactgctccaacaacgggaacg
tccttcagagtaacaactccacagcagtctcctgcaacttctcagaccacaaggccatgc
cctttgacccctgccaagatggcaccgtctccctctcccacaccttccagccctgccctc
cagacctcttcctcttcttcttcctcctcctcttgtcctgcactccgccctaagggccct
gtggcgccgaccgtggcagtgacggctccgcagcagacgcccatggtcatgaccccccag
gcccaggcccagcctacctcccagccagcggcacagacgcagacgagcgtcgcagcggcc
cccggagctccggtcgtgtcccaggagatgcaagaaaatgtgaagaagtgtaagaatttc
ctggctacacttatcaagctggcgtctcacaactctccatctcctgagacttccaagaac
gtcaaagctctggttcaggatctgctggatgccaagattgaaccggaagagttcaccagc
aggctgcagtctgagctcaagtcgtctccgcagccttacttggtgccttttctcaagaag
agcctcccggccctgaggctgtctttgctgaacagtcagcagtccctgacccagcccctg
cagcagggagtcaaaccagcagccggcggcacccctcctgccatggtagctgggccagct
gtccgcatacggcaccctaacagcgtcagcaccactgcgggtgccagcgtgctgcccgct
gggaccatcggacatgcagctgccatgggcgtgaagacaggagggactgtcagtggtccg
gtccggatgcccatggtgatcacacagtccatcagaccgcaaggaacgatagggaaggga
gccatcatacaagcaggcaaaagtcccatgggcctgcctgttcagatctctgggaatcag
aaaaacaagctcaacgaccccggaggaggctctttcagagacgatgatgacatcaatgat
gtggcctccatggccggggtgaatctgaatgaggagagcgccagaatacttgcaaccaat
tctgagctggtgggaacgcagatccggtcgtgtaaagacgaggcctttctccatccgggt
ttgctacatcgacgaatcctggaaactgctaagaagtttggagtgacagaggttcccatg
gaagccgtgacattcatctcacacgctgcacagtctcgactccgaactgtggtacaaaag
gtttctatcatcgcacagcatcgaatcgactcctgtaaggacgacgagtgctacgaacag
tctgcagacgttcggtcgcagctccgcttcttcgagcagctggagaggatcgagaagcag
aggaaggacgagcaggagagagagatccttctgaaagccgctaaaagtcgctccaggcaa
gaggacccagagcaagctcgactgaaacagaaagctaaggagatgcagcaacaagagctg
gcccagatgagacaacgagatgcaaatctgacagcactagctgctattggacctagaaaa
aaacgcaaactggactcaccaggggcaacaccatcagggactgaggtctccagcagcatg
gccggctccccaggatgctcctccaccccgtccacctcatctcgccagtatactcgacag
cgcatcacccgcgtcaacctcagggacttgattttctacatggagcaagagagagagact
gcccactcccttctcctttaccgtgcactgctcaagtag
DBGET
integrated database retrieval system
