Xiphophorus hellerii (green swordtail): 116719324
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Entry
116719324 CDS
T07363
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe02010
ABC transporters
xhe04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
116719324
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116719324
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xhe02000
]
116719324
Transporters [BR:
xhe02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
116719324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
116719324
NCBI-ProteinID:
XP_032417701
LinkDB
All DBs
Position
5:complement(25109398..25145630)
Genome browser
AA seq
2270 aa
AA seq
DB search
MAVSTQLGLLLWKNFTYRRRQTIQLLIEIIWPLFIFFILISVRMYYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRNPTPGETPGIVGNFNDSIISRLFNDAKKILLYTQNDK
SYEGYRGMLGALRKLQKNPARFKLKDFLRDDETLSHFLHHNASLSHHTLKQILEADVNLE
KVLTKGFGFHLRDLCNVTPLEEFVHIADRNVSHLTQEIICKSSSNWLNKAQNHFLSNLDF
LKPIRKDVSSDPKAVQDVSAATNNLLESLGALGIELASMKSWKDMRKEILYLTANSTGSP
KQMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGHHGNDSDSEPMSTYDNSSTPYC
NNLMKNLESSPISRMIWRALKPLLMGKILYTPDTPATQRIIHEVNKTFQELGVLRDLGGM
WEEMKPKFWSFMENSEEMDLVRSLLQSNTSAAFLDAQLSETEWSVSDVADFLTKASEDRR
PSGSAYTWREAFNETDRAIKTISQFMECVNLDKLESVPNEERLVNKSMGLLDNQKFWAGI
VFPNIAPNSTDLPPNINYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYVWGGFSYL
QDVIEQGIIRAITGTEEKTGIYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIII
KGVVYEKEARLKETMRIMGLNNGTLWLSWFISSLIPLLISAGLLVMLLKMGNLLPYSDSG
VVFLFLGSFGVVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGAK
LVVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLASPLEEDSYNLTTSICLMLFDAVLYG
IMTWYIEAVFPGQYGIPRPWYFPFTRTYWCGEKENQNINTPLSKKSNADAVCFEEDPSHI
DPGVYIENLVKIYSHGNKLAVDGLTLKFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGKDIRSELSTIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLPEEKVKAEMEQI
VNDVGLPHKRKSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLL
KYRQARTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTHLGTGYYLTLVKRDYD
LSLQSCRNSASTVSYMKKTEKEDSVSESSSDAGLGSEPESETTTIDVSLISSVIFKHVSE
ARLVEDLGHEITYVLPYQSAKDGAFVELFHELDDRLTDLGISSYGISDTTLEEIFLKVAE
DSGVDSVELSDGVVPTRTRRRHAFGDHQSCLKPFTEDDFDFNDSEGDPESRETDWLGGTD
GKGSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFG
KYPSLALHPSMYGEQFSFISNDIPEEPHNNKLLGALMDKPGFGTQCMEGEPIPDTPCVEV
KDDWTLPQVPQSVSDIFDKGNWTMENPSPLCECSCEGRKRMLPECPAGAGGLPPPQMMIS
DKDTLQNLTGRNVSDYLVKTYAQIIGKSLNNKIWVNEFRYGGFSLGARGSHVLSHTGDID
EAIVQLRQLFQLEQGTAAHRFFSSLSGFIQGLDTKNNVKIWFNNKGWHSIGSFLNVMNNA
ILRSSLKPGQDPTKFGITAYNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPASF
VVFLIQERVTKAKHMQFISGVQPLLYWLANFIWDMCNYIVPAALVIIIFVCFQQEAYVSS
TNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELFG
SNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLAWDMVGKN
LFAMAIEGVIFFCITVLIQYRFCFKARSSTGHLKPIGEEDEDVARERQRILSGGGQLDIL
ELRQLTKIYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSDVTSGEAYL
AGKSVNTEINEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVAEWGIRKL
GLIKYVDKAAGSYSGGNMRKLSTAIALIGGPPVVFLDEPTTGMDPKARRALWNAILSIIK
EGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPDPDL
RLVMEFIERELPGSTLKEKHRNMLQYQLPSSLTSLARIFSLLSKNKEALSIEDYSVSQTT
LDQVFVNFAKDQSDEDHLKDIHLSKRDAVVVDLSQLNSFLTDSKTRESCV
NT seq
6813 nt
NT seq
+upstream
nt +downstream
nt
atggcagtctccactcagctgggtctactgctatggaagaacttcacctacagacgaaga
caaaccatccagctgctgattgaaatcatttggcccttatttatcttcttcatcctgata
tcagtccggatgtattatcctccctatgaacaacatgaatgccactttcctaacaaggcc
atgccctcagcaggtaccctgccctgggtacaaggcattatctgtaatgccaacaatccc
tgctttcgtaatccgacccctggagaaactccaggcatagttggaaattttaatgactcc
ataatttcccgtctgtttaacgatgccaagaagattcttctgtacacccagaacgataag
agctacgaaggctaccggggaatgctgggagccctcagaaagcttcagaagaaccctgct
cgattcaagctgaaagacttcttgagagacgacgaaacgctttctcacttcctgcaccac
aacgcatcgctctctcatcacacgttgaagcaaattttggaggctgacgtcaatttggag
aaggtgctcacaaaaggttttggattccatctcagagatctttgcaacgtaacaccgctg
gaggagtttgtccacattgcagaccgtaacgtgtcccacttgactcaagagatcatctgc
aaatcatccagtaactggctgaacaaggctcagaaccacttcctctccaatttggacttt
ctgaaaccgattcgaaaggatgtgagttcagaccccaaagctgtccaagacgtctcagct
gcaaccaacaacctcctggagagcctcggcgcacttggcattgagcttgccagcatgaag
agctggaaagacatgagaaaggagatcctgtatctgactgcaaactcaacaggatctccg
aagcagatgtaccaggccgtgtcgcgtattgtttgcggacatccagagggaggcggcctg
aagatcaaatccctcaactggtacgaagacaacaattacaaggctctgttcggacaccac
ggcaacgacagtgacagtgagcccatgtccacctatgacaactcttcaactccttactgt
aacaacctaatgaagaacctggagtccagccccatttccaggatgatttggagagccctc
aaacctcttctaatggggaagatcctgtataccccagacactccagcaacacagaggatc
attcacgaggttaacaagaccttccaggagctgggggtgctgagagatctgggcggcatg
tgggaagaaatgaaacctaaattttggagcttcatggagaacagcgaagagatggactta
gtcaggtccttgctccaaagcaataccagcgctgctttcctggacgctcagctcagtgag
accgagtggagtgtgtccgacgtggcggacttcctcacaaaagcctcagaggaccgcaga
ccttcggggtcagcttacacatggagggaggcgttcaatgaaaccgatcgtgccataaag
actatttcacagtttatggagtgtgtgaacttggacaaactggagtcagtccccaacgag
gaacgcttggtcaacaagtccatgggtcttctggataaccagaagttctgggcgggaatc
gtgtttcccaacatcgctcccaatagcactgacctgcctcccaacatcaactacaaaatc
cgcatggacatcgataatgtggagaggacgaacaagatcaaagacggatactgggatcct
ggtcccagagcggacccctttgaggacctgcggtacgtctggggcggattttcttacctg
caggacgtcattgagcaaggaatcatccgagccatcactggtactgaggagaagacgggc
atttacatccagcagatgccctacccttgctatgttgatgatatattcctgcgagttatg
agccggtcgatgcctctcttcatgactttggcctggatgtactctgtggccatcatcatc
aaaggcgtggtgtatgagaaggaggcgcgactgaaggagaccatgaggatcatgggactg
aacaacggcaccctgtggctgagctggttcatcagcagtttaatcccactgctgatcagc
gccggcttactggtgatgctgctgaagatgggaaacctattgccgtacagcgactcaggc
gttgtgtttcttttcctgggatccttcggtgttgtaaccatcatgcagtgttttctgatc
agcactctgttttcacgtgccaacctggcggcggcctgtggaggaataatatacttcacc
ctctacctgccctacgttctgtgtgttgcttggcaagattacgtgggatttggagcaaaa
cttgtagtgagtcttctgtcccctgtggcttttggcttcggctgtgagtactttgccctg
tttgaggaacaaggtgtgggaatccagtggtctaaccttctagcaagccccctggaggag
gacagctacaacctgaccacctctatatgcctcatgctgttcgatgcagtgctgtacgga
ataatgacttggtacattgaagccgtttttcctggtcagtacgggatccccaggccttgg
tatttccctttcacaagaacatattggtgcggagagaaggagaatcaaaacattaatact
cctctgtcaaagaagagcaacgctgacgctgtgtgcttcgaggaggacccaagccacatc
gacccgggtgtttacattgaaaacctggtgaagatctacagccatggaaacaagctggct
gtggacggattgacccttaaattctatgaaggccagatcacctccttcctcggccacaat
ggagctggcaagactacaaccatgtcaatcctgactggactgttcccacccacctctggc
accgcctacatcctcggcaaggacatccgctccgagctcagcaccatccggcagaacctg
ggggtctgcccccagcacaatgtgcttttcagcatgttgaccgtcgaggagcacatctgg
ttctacgctcgcctgaagggcctgcctgaagagaaagtgaaggctgaaatggaacagatc
gtcaacgatgtcggactgccacacaagcgaaagtctcgcaccagcacgctgtcaggtgga
atgcagaggaagttgtctgtagcgctggcgtttgtcggaggttctaaggttgtcattctg
gacgagcctactgctggtgttgatccgtacgcacgcaggggaatctgggatctgctcctt
aaatacagacaagcccgcaccatcatcctttccacccaccacatggatgaggctgacatc
ctgggcgaccgtattgctatcatttcccatggcaagctgtgctgcgtgggctcctctctc
ttcctgaagactcacctcggaaccggctactacctgacgctggtcaagagagactacgac
ctgtctctacagtcctgcaggaattctgccagcaccgtctcctacatgaagaagacagag
aaggaggacagcgtatcagagagcagttcagatgctggtcttggcagcgaacctgaaagt
gagactaccactattgatgtctccctcatctccagtgtgattttcaaacacgtctcagag
gctcgtctggtggaagatctcggccatgagatcacctacgtcttgccataccagtcggct
aaagacggcgcctttgttgagcttttccatgagcttgatgatcgacttactgacttagga
atttcaagttacggaatttctgacaccaccttggaagagattttcctgaaagtggcagaa
gatagcggtgttgattctgttgagctttcagatggagtcgtaccaaccagaacccgacgg
cgacatgcatttggggaccaccagagctgcctgaagcccttcaccgaggatgactttgac
ttcaatgactctgaaggtgacccagaatctcgtgagactgactggctcggtggaacagat
ggcaaaggttcatatcaggtcaaaggctggagtctgaagagacagcagtttgttgcgctc
ctgtggaaacggttcctctacgctcgccgctctaggaaaggctttttcgctcagattgtt
ctgccagcagtgtttgtgtgcattgcactggtcttcagcctcattgttcctccgttcggg
aaatacccgagtctggctctgcatcccagcatgtatggagagcagtttagcttcatcagt
aatgacatacccgaagaaccccacaacaacaaactgctgggagctttgatggacaaacca
ggatttggaacccaatgcatggaaggagagcccataccggacactccctgtgtggaggtg
aaggatgattggacgctccctcaggttcctcaaagtgtcagtgatatattcgacaaaggc
aactggaccatggaaaacccgtctccactgtgtgagtgcagctgtgaaggccgtaagagg
atgctgcctgagtgtcctgctggggccggtggacttccaccgccacagatgatgatcagt
gacaaagacacactgcagaatttgactggtagaaacgtgtcggactacctggtcaaaacc
tacgctcagatcatcggcaagagcttgaataacaagatctgggtcaatgagttcagatac
ggtggattctctctgggcgcccgaggttcccatgttttgtcccacacaggtgatattgat
gaagctattgtgcaactcaggcaactcttccaacttgaacagggaacggcagcccatcgt
tttttcagcagtctctctggttttatccaaggattggacacaaagaataacgtgaagatt
tggtttaacaacaagggctggcacagcattggctccttcctcaacgtgatgaacaacgcc
attctgcggtcgagtctcaaacctggtcaagacccgacaaagtttggcatcaccgcttac
aaccatccactaaacctcaccaaggagcagctctcacaagttgcattgatgacgacatct
gtggacgtgttggtgtccatttgcgtcatcttcgccatgtcctttgtccctgccagtttt
gtggtcttcctcatccaggagagagtaacaaaggccaaacatatgcagttcatcagtggt
gtgcagcccttgctttactggctggccaactttatttgggatatgtgcaactacatcgtt
ccagctgcgctagtgatcatcatatttgtctgtttccaacaagaagcctacgtttcttcc
accaatctaccagtactggctctgctgcttctcctctatgggtggtcaatcacccctctg
atgtacccagcctctttcttctttaagatccccagcactgcctacgtagttctaaccagt
gtcaacatactgattggaatcaatggcagtgtgtccacgtttgtcctggagttgtttgga
agtaatgagatcggtggtattaatgacatcttgaagaatgtattcctcatcttccctcac
ttctgcctgggtagaggactgattgacatggtgaagaatcaagccatggctgatgctttg
gagagatttggtgaaaaccggtttcgctctcctctggcatgggacatggtggggaagaac
ctgttcgccatggctatagagggagttattttcttctgcatcactgtcctcattcagtac
cgcttctgctttaaagccagatcctccaccggccatctgaaaccaattggagaagaggat
gaagatgttgccagagagcgacagaggatcctgagcggcggtggacagttggacattctt
gagctgaggcagctcaccaagatttacaagcggaaacagaagccggccgtggaccggctg
tgtgttggcatccctcccggagagtgttttggtttgcttggggtcaacggagcaggaaag
accagcaccttcaaaatgttgactggagactcagatgtgaccagcggtgaggcctactta
gctggcaagagtgtaaacacagaaataaacgaggtgcatcagaacatgggctactgtcct
cagtttgatgccatcaatgaccttctgactggaagagagcacctcgagttctacgccatc
ttgagaggagtacctgagaaggaagtctgcgaggtggcagagtgggggatacggaaactg
ggattgatcaagtatgtggacaaagcagcagggagctatagtggaggaaacatgaggaaa
ctctccactgccattgcactcataggaggaccccctgttgtgtttttggatgaaccaaca
acaggaatggaccctaaggcacgtcgggccctctggaacgccatcctgagcatcatcaaa
gagggacgttccgtggtcctcacctcccacagtatggaggagtgtgaagcactctgtacc
agaatggctatcatggtgaacggcaggttccgctgtctgggcagtgtgcagcaccttaaa
aatcggttcggagacggctacaccatcatcttgcgcgtggcgggaccggacccggaccta
cggctggtgatggagttcatagagcgggaattgccggggagcacgttgaaggagaaacac
cgcaacatgctgcagtaccagctcccctcttcgctcacctccctcgcccgaatcttctcc
cttctctccaaaaacaaggaggcactcagcatagaggactactctgtctctcagactact
ttagaccaagtgtttgttaatttcgccaaggaccaaagtgacgaggaccacttgaaagac
atccacctgagcaagcgggatgcagtcgtggtggacctttctcaattgaactctttcctc
acggacagcaaaacaagagagagctgcgtctga
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integrated database retrieval system
