Xiphophorus hellerii (green swordtail): 116719431
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Entry
116719431 CDS
T07363
Symbol
tmc5
Name
(RefSeq) transmembrane channel-like protein 5 isoform X1
KO
K21988
transmembrane channel-like protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xhe02000
]
116719431 (tmc5)
03037 Cilium and associated proteins [BR:
xhe03037
]
116719431 (tmc5)
Transporters [BR:
xhe02000
]
Other transporters
Pores ion channels [TC:
1
]
116719431 (tmc5)
Cilium and associated proteins [BR:
xhe03037
]
Other cilia and associated proteins
Stereociliary proteins
116719431 (tmc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
Motif
Other DBs
NCBI-GeneID:
116719431
NCBI-ProteinID:
XP_032417834
LinkDB
All DBs
Position
5:21194571..21206380
Genome browser
AA seq
973 aa
AA seq
DB search
MTSYSNGGVFNPAYHDSETLEIDRRSSRKHQHTNPYARVDPAQWGHNVEPGDNGEWGAAG
DGWSGRENVPMGLISTPLGSPPLQHNPNNNTSQIDPDSQYDHLPPVQLHSSISGNMTMRW
RGVTMRRMSMFPNAYPAHAAFTEDAIKSEMENEEQNLIKELVALSTTEQIRKIRELPVSF
EEKKHVRTQVTAFKSAGQYHHFTSLTDFSQNMSLSMRRFGYSIKSARQTLQLWQGIMKEI
GGKFGSSVLNYFVLLKWLLLFNIFSFLVNFGFITIPLLVYDLSLNVSPNVSFRGLELLTG
AGYFNYTIMYYGSYSNETIRGLVDYDMQLAYFFTISAYMVLCGLVLIFSMASSFKKNYAL
ADPASNSAWQLLCSWDFSITNEKAVNRRKNNLRIQLKESLSEKAHRERKTTSEQLKQYGI
YFGSWLLSTGLAAGCGASIFYLCHYEHERAEDTETWSALKEAETLLVPFVVSLMNMVIPL
FFSLFNKFEQYSSQRKQIYALLFRNVLLRISILGVLCYYWMNTVPQKFTCWEPMVGQALY
RLVIVDFIFLMLGSLFGEFLSNVIGTKIQPRLGVPEFDVARNVLEIIYAQTLAWIGIYFS
PLLPVIQILKFFILFYLKKVSLTHNCQPPRRSGRAAQMKTIFIFLLFFPFFVGALSIVAY
TSWRLTPSEQCGPFRGLNSTFSVTGEWIDHMHNNSSTHWVGWIYQNVIRSEIFYFLSTLI
ILVIIYIFWQLIQGRKQLIVLLRRQIINEGKDKSFLLEKLQNLQKSCPDVNKKHKKRITH
TSRRSAERSSGSQSNSNAMVQVLLARQQLEEEERRRASGVSVPSDIPTSDAVTQAMLARQ
KAERQDENVYEITDGRPPSLDAVAQSLAARQRAEDRDEYWSTTHFNQSNPVNSSIIQVRQ
SAERDREDDSHDASSPVSSVMIQVMQARQKAEEEERNQRIHPPGQNPAPPGSSALIQAML
ARQQAQNEYDDGY
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgacgagttacagtaatggtggagttttcaacccagcctaccatgacagtgagactctg
gaaattgacaggaggtcttccaggaaacaccagcataccaatccgtatgcgagagtagac
ccagcccagtgggggcataatgttgagcccggagataatggtgagtggggagcagccggg
gatggttggagtgggagagaaaacgtccccatggggctcatctccacacccctgggaagt
cctccgttgcagcataaccccaataacaacacaagtcagattgacccagattctcagtat
gatcacctaccacctgttcaacttcattcttcaatttcaggcaacatgacaatgagatgg
agaggagtaacaatgagacggatgagtatgtttcctaatgcctatcctgcccatgcggct
ttcacagaagatgccatcaagagtgagatggaaaatgaggaacaaaacctcatcaaggag
cttgttgccctgtccacaacggagcaaatcagaaagatccgggagctgcctgtgagcttt
gaagagaagaaacacgtcaggacccaagtaacggcattcaagtctgcaggacagtaccat
cacttcacatctttaacagatttttctcaaaatatgtcactgtcaatgcgaaggtttggg
tacagtataaaatccgccaggcagaccctgcagctttggcaaggcatcatgaaggagatt
gggggcaaatttggctccagcgttctcaactattttgtgcttctaaagtggcttctcttg
ttcaacattttctccttcctggtcaactttggcttcattaccatcccgctcctggtttat
gacctttcactcaacgtatccccaaacgtgagcttcagaggtctggagttactcaccgga
gctggttatttcaactacaccatcatgtactatgggagctacagcaatgaaacaattagg
ggcctggtggattacgacatgcagctcgcctatttctttaccatctcggcctatatggtg
ctgtgtggactcgtgctcattttcagcatggcgagctcatttaaaaaaaactatgccctg
gcagacccagcttcaaacagtgcatggcagcttttgtgcagctgggatttcagcataacc
aacgagaaagcagtgaaccggcgtaagaacaaccttcgaatccagctgaaggaatcttta
tcagaaaaggcacacagggagcgaaaaacaacttctgaacaactgaagcagtatgggatt
tattttggttcctggctcctctccactggtctagctgctggctgtggagctagcatcttt
tatctctgccattacgaacatgagcgggctgaagacaccgaaacatggtccgcactgaag
gaagcagagacactcctggttccctttgtagtgtctttgatgaatatggtcattcccctc
ttcttctcactcttcaacaagtttgagcagtactccagccagcgcaaacagatttatgcc
ttgttgttcagaaatgtgttactccggatatccattttgggtgttttgtgctattactgg
atgaatacagtgcctcagaaattcacatgctgggagcccatggtaggacaggctttgtac
cgtttggtcattgtcgatttcatttttctgatgctgggatccttgtttggagagtttctt
agcaatgtgattgggaccaagatacaaccacgtttaggagtaccagagttcgatgtagcc
agaaatgtcctggaaatcatttatgctcagactctggcctggattggaatctacttctct
cctctgttacctgtgatccagattctcaagttcttcatcttgttttacttgaaaaaggtc
agtttgactcacaattgtcagcctccacggcgttcaggcagggcggctcagatgaaaacc
atcttcatctttctcctcttctttcctttctttgtgggagccctgtctatcgttgcgtac
acctcctggaggctgaccccttcggagcagtgtggccctttccggggcctcaacagcacg
ttcagtgtgactggagagtggatagatcacatgcacaataattctagtactcattgggtt
gggtggatctaccaaaatgtcatcaggagtgaaattttctactttcttagcacactcatc
atccttgtcatcatatacatcttctggcagctcattcagggccgaaagcagctcattgtt
cttctgagaaggcagattattaatgaggggaaagacaagtccttcctgttagaaaagctg
cagaacctgcagaaatcctgtccggatgttaacaaaaaacacaaaaaacggataactcat
acaagtcgacgttcagctgagcgctcctctggaagtcagtccaactcaaacgcaatggtt
caggttctactcgctcgccagcagctggaagaggaggagagacgccgtgccagtggcgtt
tcagtcccgtcggacattcccacctccgacgccgtgacgcaggccatgctggcccgccag
aaagctgagagacaagatgaaaacgtctacgaaatcaccgacggacgccctccttccctc
gatgcggtggcgcagagcttggcagccagacagagggctgaagacagggatgaatactgg
agcacaacccactttaaccaaagtaacccagttaacagttccattatccaagtcagacaa
agtgctgaaagggacagagaagatgattcacatgatgcttcatcccccgtatcaagtgta
atgattcaagtcatgcaagccaggcagaaagcagaggaagaggaaaggaatcagaggatc
catcctccagggcaaaacccggctcctcccggctccagcgctctcatccaggccatgttg
gcccggcaacaggcccagaatgaatatgatgatggttattga
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