Xiphophorus hellerii (green swordtail): 116719579
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Entry
116719579 CDS
T07363
Name
(RefSeq) transitional endoplasmic reticulum ATPase-like
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04137
Mitophagy - animal
xhe04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116719579
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
116719579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116719579
03009 Ribosome biogenesis [BR:
xhe03009
]
116719579
04131 Membrane trafficking [BR:
xhe04131
]
116719579
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xhe04147
]
116719579
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
116719579
Ribosome biogenesis [BR:
xhe03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
116719579
Membrane trafficking [BR:
xhe04131
]
SNARE
SNARE associated proteins
Others
116719579
Autophagy
Aggrephagy
Other aggrephagy associated proteins
116719579
Exosome [BR:
xhe04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
116719579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
Vps4_C
RNA_helicase
AAA_14
NPHP3_N
AAA_28
Parvo_NS1
ATPase_2
nSTAND3
DUF815
Mg_chelatase
AAA_7
AAA_18
ATPase
IstB_IS21
ABC_tran
AAA_17
NACHT
TsaE
AAA_24
Sigma54_activat
ResIII
Viral_helicase1
NB-ARC
PhoH
SLFN-g3_helicase
Cytidylate_kin
KAP_NTPase
Zot
AAA_6
Motif
Other DBs
NCBI-GeneID:
116719579
NCBI-ProteinID:
XP_032418022
LinkDB
All DBs
Position
5:23481976..23491945
Genome browser
AA seq
810 aa
AA seq
DB search
MPGPGGAEPKGEDFSTAILKEKHRPNRLIVDEALNEDSSIVSLSQNKTEELQLFRGDTVV
LRGRKRRQTVCIVLTDDTCGHERIRMNRVTRNNLRVRLGDVISIHACPDIKYGKKIHLLP
IDDTIEGLTGNLFEVFLKPYFLEAYRPVHKGDIFLVRGSMRAVEFKVVETDPSPHCIVAP
DTVIYCEGEPIKREDEEENLNDVGYDDIGGCRKQLAQIKEMVELPLRHPGLFKAIGVKPP
RGILLYGPAGTGKTLVARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAESNAP
AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVVVMAATNRPNSIDSALR
RFGRFDREIDIGIPDSTGRLEILQIHTKNMKLADDVDLEKIATETHGHVGADLAALCSEA
ALQAIRKKMTLIDLEDETIDADLLNSLAVTMDDFQWALSQSNPSALRETVAEVPQVNWED
IGGLDEVKRELQELVQYPVEYPDKFLKFGMTPSRGVLFYGPPGCGKTLLAKAIANECQAN
FVSIKGPEMLTMWFGESEANVRDVFDKARQAAPCILFFDELDSIAKSRGGGAGDAGGAAD
RVINQILTEMDGMSDKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDKPSRTAILK
ANLRKSPIARDVDLDFLSGITEGFSGADLTEICQRACKLAIREAIEAEIKAERQRQSRPG
IPMDEDFDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGNFRFPSATG
TRSGGQGSGPGSGSERPGLYREEGDDDLYQ
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgccaggcccgggaggagcagagccgaagggagaggatttctccaccgccatcctgaag
gagaaacacagacccaacaggctgattgtggacgaagcgctcaacgaggacagcagcatc
gtcagcctgtcgcagaataagacggaggagctgcagctcttccgcggcgacaccgtggtg
ctgagaggacggaagcgacggcaaaccgtgtgcatcgtcctgacggatgacacctgcggg
cacgagaggattcggatgaacagggtgacgcgcaacaacctgcgagttcgcctcggtgat
gtcatcagcatccatgcctgccctgacatcaagtatgggaaaaagatccacctcctcccc
attgacgacactattgagggcctgacagggaacctctttgaagttttcctcaagccgtac
tttctggaggcgtaccggccagtacacaaaggtgacattttcttggtgaggggaagcatg
agagctgtagagttcaaggtggtggagacggacccgagccctcactgcatcgttgcccca
gacactgtcatctactgcgaaggagagccgataaaaagagaggatgaagaggagaatctg
aacgatgtcgggtatgacgatatcggaggctgtcggaagcaactcgctcagatcaaagag
atggtggagcttcctctccggcacccagggctcttcaaggcgatcggagttaagcccccc
agaggcatcctgctttatggccctgcaggtacagggaagacccttgtggcccgagcggtc
gccaatgaaaccggcgccttcttctttctaatcaacggtcctgagattatgagtaagttg
gcaggggagtctgaaagcaacctaagaaaggcgtttgaggaggcagagagcaatgctccg
gccatcatcttcatcgatgagctggacgccatcgctcccaagagagagaagactcacggc
gaggtggagaggcgcatcgtgtcccagctcctgaccctgatggatgggctgaagcaaagg
gctcacgtggttgtgatggcggcgacgaaccggccgaacagcatcgactccgctctgaga
cgcttcggcaggtttgatcgagagatcgacattgggatcccagactccaccggcaggctg
gagatcctgcagatccacaccaagaatatgaagctggcagacgatgtcgacctggaaaag
atcgccacggaaacacacggacacgtgggcgccgacctcgccgctctgtgctcagaagct
gctctgcaggcaatccgcaagaagatgacgctcatcgacctggaggacgagactatcgat
gctgacctgctcaactctctggccgtcaccatggatgattttcagtgggccctgagtcaa
agcaacccatcagctctgagggagaccgtagcagaggttcctcaggtcaactgggaggac
atcggtggtctggacgaggtcaaacgagaactccaagagcttgttcagtatcctgtggag
tatcctgacaagttcctgaagtttgggatgacgccgtcccgtggggtgctgttctacggc
ccgccgggctgcggaaaaacgctcctggcgaaggccatcgccaacgagtgccaggcgaac
tttgtgtccatcaaagggcctgagatgctcaccatgtggttcggagagtcggaggccaac
gtcagagatgtgtttgacaaggccaggcaggcggccccctgcatcttgttttttgacgag
ttggactccatcgcgaagtcccgaggaggcggggcgggggacgccggtggagccgcggac
agagtcatcaaccagatcctcaccgagatggacggcatgtcggacaagaagaacgtcttc
atcatcggcgccacaaacagacctgacatcatagacccggccatcctgcggccgggccgt
ttggaccagctcatctacatcccgcttccagacaaaccctctcgcacagcaattctgaaa
gccaacctgcgcaaatcacccattgcccgggacgtggacctggacttcctctctgggatc
actgagggtttctccggagccgacctgacggagatctgccagcgcgcttgtaagctggcc
atccgggaggccatcgaagccgagatcaaggctgagcgtcagaggcagagcagaccggga
atccccatggacgaggacttcgacccagtcccagagatcaggaaggaccactttgaagag
gccatgcgcttcgctcgtcgctctgtcagcgacaacgacatccgcaaatacgagatgttt
gctcagactctgcagcagagccgaggtttcgggaacttcaggtttccgtctgctacggga
acccggtctggaggtcaggggtcggggccaggttctggatcggagaggccgggtctgtac
agagaggaaggggatgacgacctctaccagtga
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