Xiphophorus hellerii (green swordtail): 116719737
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Entry
116719737 CDS
T07363
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116719737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xhe03041
]
116719737
03009 Ribosome biogenesis [BR:
xhe03009
]
116719737
Enzymes [BR:
xhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116719737
Spliceosome [BR:
xhe03041
]
Complex A
U1 snRNP components
U1 related factors
116719737
Complex B
116719737
Ribosome biogenesis [BR:
xhe03009
]
Eukaryotic type
Pre-60S particles
Helicases
116719737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
116719737
NCBI-ProteinID:
XP_032418272
LinkDB
All DBs
Position
5:8484401..8496415
Genome browser
AA seq
636 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGNRGGPPPGKFGNPGERLRKRHWNLDELPKFQK
NFYQEHPDVTHRPLQEVEEYRRSKEVTVKGRDCPKPIVKFHEAAFPSYVMDVIVKQNFTD
PTPIQSQGWPVALSGKDMVGIAQTGSGKTIAYLLPAIVHIQHQPFLEHGDGPICLVLAPT
RELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK
TNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKD
YVQINIGALQLSANHNILQIVDVCNDLEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDE
LTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRFGKAPILIATDVASRGLDVEDVKFVINY
DYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAE
DRGGRGRGGRGGYRDDRRDRYSGGRSNFGGGGGYRDRDGDRGFGNGPKTAFGGNKAQNGG
NYGGNNSNSSGNYGNSNYSNSNGQGNFSAAPNQGGAGGFGNQNFQGPPQFGGMQRPAQNG
VNHPPFPFNSQPPPQNQQPPPPPPMVPYPMPPPFPQ
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgcctggcttttcagacagagaccggggcagagatagaggttatggtggcggccctcct
cgttttggtggcggtggaggaggcaacaggggaggccctcctccaggaaagtttggaaac
cccggagaaaggctgaggaagagacactggaacctggatgagcttccaaagtttcagaag
aacttctaccaggaacacccggacgtcacacacagacctctgcaagaggttgaagagtat
cggagaagcaaagaagtcacagtgaaaggcagagattgtcccaaaccgatcgttaaattc
catgaagctgcttttccaagctatgtcatggatgttattgttaagcagaacttcactgac
ccgactccaatccagtcccaggggtggccagtcgctctgagcggcaaagacatggtgggc
atcgctcaaactggctctgggaaaaccattgcttatcttctgccggcaattgttcacatc
caacatcagccgttcttggagcacggagacggacccatttgcttggttctggccccgacc
cgggagctggctcagcaggtgcaacaagtggctgctgaatatgggagggcttctcgtctc
aagagtacctgcatctatggtggcgcgccaaaagggccacaaataagggacctggagagg
ggagtggagatttgcatcgctactccaggccgtctcattgatttcctggagtgtggtaaa
accaatctgcgtcgttgcacctaccttgtgctggatgaagccgaccgcatgctggacatg
ggctttgaacctcagatccgcaaaatagtggaacaaattcggcctgatcgtcagactctg
atgtggagcgccacctggccgaaagaggttcgtcagctggctgaggacttcctgaaggat
tatgtccagatcaatattggtgcattgcagctcagtgccaatcataacatcctgcagata
gttgatgtctgcaatgacctggagaaggaggacaagctgatccgtttgttggaggagatc
atgagcgaaaaggagaacaagaccattatctttgtggagaccaagcgacgttgtgatgaa
cttaccaggagaatgagaagagatgggtggccagcaatgggtatccatggagacaagagc
cagcaagaaagggactgggttcttaatgagttcagatttggcaaagctccaattctgatt
gctactgacgtggcttcccgtggtttagatgtggaggatgtgaaatttgtcatcaattat
gactaccctaactcctccgaggactatatccaccgcattggccgcacggcccgcagtcaa
aaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaggccagcgacctg
atctctgtgctgcgcgaggctaaccaggccatcaatcccaagctcatccagatggcagag
gacagaggaggtcgcggacgggggggaagaggtggctatagggatgaccgtcgcgatagg
tattcaggcggcagaagtaacttcggtggcggcggcggctacagggacagggacggcgat
agagggttcggcaacggcccgaaaactgcctttgggggaaacaaagcccaaaacggtggg
aattacggaggcaacaatagcaattctagcggtaactatggcaacagcaattacagcaat
agtaacggacagggtaactttagcgctgcaccaaaccaaggcggcgctggcggctttggt
aaccagaacttccagggcccccctcagtttggcggtatgcagaggcccgcccagaacggc
gtgaaccacccgccgttccccttcaactctcagccaccgccacagaaccaacagccaccg
ccgccgccaccgatggtgccctacccgatgccgccgccattccctcagtaa
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