Xiphophorus hellerii (green swordtail): 116719899
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Entry
116719899 CDS
T07363
Name
(RefSeq) VPS10 domain-containing receptor SorCS1-like isoform X1
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116719899
Membrane trafficking [BR:
xhe04131
]
Protein recycling
Others
Others
116719899
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
APC1_3rd
Motif
Other DBs
NCBI-GeneID:
116719899
NCBI-ProteinID:
XP_032418589
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Position
5:1208060..1371631
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AA seq
1277 aa
AA seq
DB search
MQLLPLRAGLHFVKSFNLDHLGSVALWTPLHLAPTPQLAAVSLPHRAQNLPERQTDSQHP
LHPVLPPAMETEVRFCPKWHGALRFGLFFLLRGLVGVAEAEITCRSCRDGNMWYGAQELL
LRVETSGPAAGVMGEVLGSGDRTGRVPCEPGPAGCAPDRGHQAQLRRERITDSGKVSQHR
DGVGSTPRRFRRDSGGDAVSSAPAEGAAAAAAAAGRRAARWSGEERRAAGARQEDLKLNS
STFALTGDSSHNQAMVHWSGQNSSVILMLTKLFDFNLNSVTESSLWRSTDYGATYQKLND
KVGAKTILSYLYVSPNNKRKIMLLTDPEIESSLLISSDEGATYQKYRLNFYILSLLFHPE
QEDWILAYSYDQKLYSSVEFGRRWQLVHEKVAPNRFYWSKMGLDKEPGLIHLETSISEGQ
ALYVTCKLQNCTDANKGKPFPGYIDPNSLVVQDEYVFVQVSTAGRPVYYVSAKRDVFTPM
KLPKYTLPKELHVISTDENRVVAAVQEWNQNETYNLYVSDTSGVYYTLALENVVSSMGLE
GNVMVDLYEVAGIKGMFLANKKTDNQVKTYITYNRGRDWRLLQAPGRDLRGSSIHCVLPY
CSLHLHLHVSANPYTSGNIASRESAPGIIVASGSIGSELTTSNVSAFITSDAGNTWRQIF
DEEYAVLYLDQGGALVAIRHTPLPIRHLWLSFDEGRQWNKYSFSNTPLFVDGVLGEPGEE
TLIMTIFGHFSHRSEWQLVKIDFRSIFNRRCTEADYQTWHLHNQGEPCLMGVKRIYRKLK
PTSRCVMGKSYSVAMTSAPCDCTEADFECDYGYERRTDGKCSPAFWFHPSSMSRSCTTGM
TFLNSTGYRKVVSNNCTAGVIAEYTARRQHCPTQAPKGLHLVTSEGRLTATLGANVTFLV
FLEEGDGARTSITVDFGDGHALTYSNVSSIEDGIKHIYKSVGIYRVTATGENSLGSETAT
LFLHVTCQLEHIHLSAPFVAVRNKEVNLTAVLHPSQVGTVTYIWWIGNNTEQPVITLEGS
VACTFSREGINTVTVQVSAGNAILQDRKTIAVHDYFRSHLLAFSSNLDEHNPDVAEWRQD
VSRVIRNALIQATGVREDLLLVSVLPGLPTAAEFFLLPDKQLTEGKAEKSSAHLDQLSDL
LLNALNQNLVQFTLRPGVQVTVYAAHLSAAPLVDTSENHSGSAMLMLLSVVVAGLAVFVI
YKFKRKIPGLNVYAQMQNDKEPEMMSPANPSEATPSSPQDLVPSLEILDTELNLRPIGCM
KPHVHVKFSTELPTFIV
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcctccctctgcgcgcggggcttcatttcgtcaaatccttcaacttggaccac
ttaggctcagtcgcactttggactccactgcatttggctccaacgccgcaacttgcagca
gtttctcttccacatcgagctcagaacctcccggagaggcagacagactcccagcatccg
ctgcatcctgttcttcccccagcgatggagacggaggtcaggttctgcccaaagtggcac
ggtgcgctccggttcgggctcttcttcctcctgcgcggcttggtcggcgtcgccgaggct
gagataacctgcaggtcatgccgggatgggaatatgtggtacggcgcgcaggaattactg
ctgagggttgaaacaagtggtcccgctgccggggtaatgggggaagttttggggagcgga
gaccggaccgggagggtcccctgcgagccgggccccgctggttgcgctccggaccggggg
catcaggcgcagctgaggcgggagcggattacagacagcgggaaagtttcccaacacagg
gacggtgttggttcgactccacggcgcttcaggagggacagtggcggggatgcagtcagc
tcagccccggcagagggagcggcggcggcggcggcggcggcggggcgcagagcggcgcgc
tggagcggagaggagcgcagagcggccggcgcgcggcaggaggacttaaagctcaacagc
tccacgttcgccctgaccggggactcatcccacaaccaggccatggtgcactggtccggc
cagaacagcagcgtaattctgatgctaaccaaactctttgacttcaacctcaacagtgtg
actgagagttcattatggaggtcaactgactatggagcaacgtaccagaagctgaacgac
aaagtgggagcgaagacgatcctcagctacctgtatgtgagccccaacaacaagagaaag
atcatgctgttgacggatccggagatagagagcagccttctgatcagctctgatgaagga
gccacataccagaagtaccgactcaacttctacatcctgagcctcctgtttcaccctgaa
caggaggactggatcctggcatacagctacgaccaaaagctttacagttctgttgagttt
ggaagaagatggcagctggtgcacgagaaagtggctcctaatcgtttctactggtccaag
atgggtttggacaaagagccgggcttaattcacctggaaaccagcatctctgaaggacag
gcgctgtacgtcacctgcaagctgcagaactgcacagacgccaacaagggcaaaccattc
cccggatacattgaccccaattccctggtggtgcaggatgagtatgtgtttgtccaggtg
tccactgcaggaaggccggtctactacgtttctgcaaaacgagacgtctttaccccgatg
aagctgccaaagtacaccctgcccaaggagctgcatgtgatcagtacagatgaaaaccgc
gtggtggctgctgttcaggagtggaaccagaatgaaacctacaacctgtacgtgtcggac
acttcgggcgtctactacactctggctctggagaacgtggtcagcagcatgggcctggag
ggcaacgtcatggtggacctctacgaggtggcaggaataaagggcatgttcctcgccaac
aaaaagactgataaccaagtaaagacgtacatcacatataaccgcggcagagactggagg
ttactgcaggcccctggcagagacctgagaggcagcagcatccactgtgtgctgccgtac
tgctcattacatctccatcttcacgtgtctgccaacccctacacatctggaaacatcgcc
agcagggagtcggcgccggggatcatcgtggcctcaggctccatcggttcagaactgacc
accagcaatgtgagtgcgttcatcacctctgatgcaggaaacacgtggagacagatcttt
gatgaggagtacgccgtgctttatctcgaccaaggtggagccttggtggcaataagacac
actccacttcccatccgacacctatggttgagcttcgacgaaggacggcagtggaacaag
tacagcttctccaacacgcctctgtttgtggacggggtgctgggcgagccgggcgaggag
acgctcatcatgacgatctttgggcacttcagtcatcgctctgagtggcagctggtaaaa
atagatttcaggtccatcttcaacaggagatgcacggaggcggactaccagacgtggcac
ctacacaaccagggtgagccgtgtctgatgggcgtgaagagaatctaccggaagctgaag
ccgacctccaggtgcgtcatgggaaagtcgtactccgtggcgatgacctcggctccctgc
gactgcacggaggcggacttcgagtgtgattatggctatgagaggcggactgatgggaag
tgcagccccgccttctggttccatccgtcctccatgtcccgcagctgcaccacgggaatg
acttttctcaacagcacgggctacagaaaggtggtgtccaataactgcacagcaggagtg
atagcagagtacacggcccggcgacagcactgccccacccaggctcccaaaggcctccac
ctggtcaccagcgagggccggctgaccgccacgctgggcgccaacgtcaccttcctggtt
ttcctggaggagggagacggagcgaggaccagcatcacggtggactttggagatggtcac
gctctgacgtattccaacgtgagctccatcgaggacggcatcaagcacatctacaaatcc
gtgggaatctaccgggtgacggccaccggggagaacagcctcggttctgagaccgccacg
ctcttcctgcacgtcacatgtcagctggagcatatccatctctctgctccctttgtggcg
gtgaggaacaaggaagtgaacctgaccgccgttctgcatcccagccaagtgggaacggtc
acctacatctggtggatcggaaataacaccgagcagcctgttatcaccctggagggaagc
gtggcgtgtacgttctccagggaagggatcaatacagtcacggtgcaggtgtctgctggg
aacgccatcctgcaggacaggaaaactatcgctgtccacgattatttccgatcccacctg
ctggccttctcctccaacctggacgaacacaacccggacgtggctgagtggaggcaggat
gtgagccgggtgatccggaacgctctgatccaggcgacaggcgtgcgggaggacctgctc
ctggtctccgtcctgccaggtttaccaacagcagccgagtttttcctgctgcctgacaag
cagctcaccgaggggaaagcagagaagagctcggctcatttagatcagctctctgacctc
ctgctgaacgccttgaatcagaacctggtccagttcacgctgcggccgggggtccaggtc
accgtgtacgccgctcacctgtcggcagcgcccctggtggacaccagcgagaaccacagt
ggctctgccatgctaatgctgctctctgtagtggttgcgggtttagctgtgtttgtcatc
tacaaatttaagaggaagatcccaggcctcaacgtctatgcgcagatgcagaacgacaaa
gaaccagaaatgatgagtccagccaatccctcagaggccacgcccagctcaccgcaggac
ttggtgccttctctggagattctggacaccgagttgaacttgcggcccatcggatgtatg
aaacctcatgtacatgtgaaattctccacagaactccccacattcatcgtctga
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