Xiphophorus hellerii (green swordtail): 116719907
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Entry
116719907 CDS
T07363
Symbol
dhx15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116719907 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xhe03041
]
116719907 (dhx15)
03009 Ribosome biogenesis [BR:
xhe03009
]
116719907 (dhx15)
Enzymes [BR:
xhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116719907 (dhx15)
Spliceosome [BR:
xhe03041
]
Complex A
U2 snRNP components
U2 related factors
116719907 (dhx15)
Complex B
116719907 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
116719907 (dhx15)
Ribosome biogenesis [BR:
xhe03009
]
Eukaryotic type
90S particles
Helicases
116719907 (dhx15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
SRP54
AAA_25
Atrophin-1
nSTAND3
AAA_29
AAA_7
Apis_Csd
Motif
Other DBs
NCBI-GeneID:
116719907
NCBI-ProteinID:
XP_032418606
LinkDB
All DBs
Position
5:15856247..15866963
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AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDEYSSSKKRSDGRDRDRDRDREDRSRDRDRDRDRDRDRDRDRDTKLSAAP
SNSMPLMSSIPPVKQMNMHQQINPFTNLPHTPRYYEILKKRLQLPVWEYKESFSDIITRH
QSFVLVGETGSGKTTQIPQWCVDMVRALPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRQDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEDEGDVLLFLTGQEEIDEACKRIKREVDDLGPDVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHEANQWCYDNFVNYRSLMSADNVRQQLSRIMDRFSLPRRSTEFTSRDYYINIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYDMSNFPQCEAKRQLERIIAKLESKEYTQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacaccgtttggacttgggcgatgaatactcctccagtaagaaacggtct
gacgggagagacagagaccgcgacagagaccgtgaggaccgttccagagacagggatcga
gacagagatcgcgacagggacagagaccgggacagggacaccaagttgtcggccgctccc
tctaacagcatgccgttgatgtcgagcataccccctgtcaagcagatgaacatgcaccag
cagattaacccattcaccaatctgccacacacgccgcgctactacgagatcctgaagaaa
aggctacagcttccggtgtgggagtacaaagaaagcttcagcgacatcattacacgccat
cagagctttgtccttgttggagagactggctctggaaaaacaacacagattcctcagtgg
tgtgtggacatggtgagggccttgcctggtcctaagcgggccgtagcttgtactcagccg
aggagagtggctgccatgagtgtggctcaaagggttgcagacgaaatggatgtcatgctt
ggacaggaagttggctactccatcagatttgaggactgcagctctgccaagactatatta
aaatacatgacagatggtatgttattgagagaggctatgaatgatcctctgctggagcga
tatggtgtgatcattctggatgaggcccacgagcgaactctggccacagacatcctgatg
ggcgtgttaaaggaagtggttcgtcaaagacaagatctgaaggtaattgtgatgagtgcc
accctagatgcaggaaagttccaagtgtacttcgacagctgccctctgctgaccattcct
ggacgcacacatcctgtagagatcttctacacccctgaaccggagcgggactacctggag
gcagctattcgtaccgtcattcagattcacatgtgtgaagaggatgaaggtgacgtcctt
ctgttcctcacaggtcaagaggaaattgatgaagcctgtaagagaatcaaacgagaagtt
gacgaccttggccctgacgtcggagacatcaaaatcattccactgtattccacgttgccc
ccgcagcagcagcagaggatctttgagccacctcctccaagaaagccaaacggcgctata
gggagaaaggttgttgtgtcaacaaatatcgctgagacgtcgctaacaattgatggtgtt
gtgtttgtcattgaccccggatttgccaaacagaaggtgtataatccccgcatcagagtt
gagtctctgctagtcacagccatcagtaaagcttcggcacagcagagggcaggaagagct
ggcagaacacgcccagggaaatgttttcgcctctatacagagaaggcctacaaaacagaa
atgcaggataatacatatccagagattcttcggtccaatttgggatctgttgtgctgcag
ttgaagaagttgggcattgatgaccttgtccattttgacttcatggaccctccagctcct
gaaacgctaatgagggctcttgagctgctcaattatctggccgctctcaacgatgatggt
gacctgactgaacttggctccatgatggcagaattcccgctggatcctcagctggccaag
atggtcatagcaagctgcgagtttaactgctccaatgagatcctctccatcactgccatg
ctgtcagtcccacagtgttttgtccgtcccacggaggctaagaaggcagcggacgagtcc
aagatgagatttgctcacattgatggagaccacttgacgctgctcaatgtctaccacgcc
ttcaaacaaaaccatgaagctaatcagtggtgttatgacaactttgtcaactaccgctcg
ctgatgtctgctgacaatgtacgtcagcagctgtccaggattatggaccgcttcagtctg
cctcggcgtagcacagagtttaccagcagagattactacatcaatatccgacgagcgctc
tgcaccggcttcttcatgcaggtggctcatttggagcgcacaggccattacctcacagtg
aaagacaaccaggtggtccagctgcacccatccacagtcctggaccacaaacctgagtgg
gtgctctacaatgaatttgttctcaccaccaagaactacatccgcacttgcacagacatc
aaaccagagtggttggtgaagattgcaccacagtactatgacatgagtaactttccacaa
tgtgaagctaaaagacagctggagcgaattattgccaaactagagagcaaagagtacacc
cagtactga
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