Xiphophorus hellerii (green swordtail): 116719919
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Entry
116719919 CDS
T07363
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
116719919 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116719919 (slx4)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116719919 (slx4)
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
116719919 (slx4)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
116719919 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
116719919
NCBI-ProteinID:
XP_032418636
LinkDB
All DBs
Position
5:23947726..23972824
Genome browser
AA seq
1449 aa
AA seq
DB search
MDDSELDFVDLCSKLLKRVRKREPAGRPSRKAEQQSCSKSTPGDKRAVDEQDEDSLSGFS
ATGSEVVCGGTGRDSGDAVQSSAFPPADADLRAKDNVLLRMQEFKRASPQKMMHSNRIEP
AKTDGCTLTAQHQKADKAAAPRSGLPESDEALALRLQRELDREAAEAQMVDLEDGGLFFC
QICHRDLSHMTPDGRTQHLNRCLDQSEQSAPSLPPPSAVPNCPICGKKFKSQKSRSAHLK
RCSADMGVSPTVLLQALQRQAEESRSSAVAANAHLETGGIKRKGPPQPELPARKKPRKKA
DRLDEDTMVALALSSSLLEQQKEQQVQSGSSHSSVTPLLTWKPDAAKGRVKKKKVAVPRP
PPLLLVQDAETALARLQERVSALLLRRRSPSPPTPTRRPSKLPGWTGAAPLWRKSTLLGG
GSTCPSQFYAAELQHLFTAELSKPDPVFSSSSSKPESSVPPALPSQTASSSPSTPGTGEL
HVGSQALRDLMELAEDGMTLTQYGYADKAKHPSGFIQEEELEDQAEPSDDTASSSRAVRR
SDQPEADRDAARHESVALSKLASDLSSMVNNPQLSDVQLQVDSGEVYFAHSFMVYARCPL
LAEMVHESGFGVQEEGMAAAQRVLLSDVPGQAVLALLRYLYTAHCSVAASLRPHVLELAS
RFDLQELERLCHFQPENMAAGDDRLDVNQEENVNNQTDQTFVELLQSMWNEEDSEGDAGD
SDGGGRSEGDRPEDEVAAGDGEIGEERVNEEELEEIYEFAATQRQRVKEEEEKKEEEEDA
EREPGSDRSYGRLFSQSWGVYQDGEASSSPPLLPHEAAPKHSARTLLQSSASFADESSLN
LPFPGPSPWRPAQEDGHRRGEEAAAESRARRSALPSPARRDEAELIVLSDSSEEAEADRS
FTGIKPGQNPSPRESVCGSQYSPGDPAGCSPELSWLVPSTPVRSPVGNTKTASMQTDSSM
CRTRLFPRVDLASPSRNTVPTSSTPLKASPERRVSPDNRKSTEVFAAHRSVRDSSKYEAP
LQPRSISSTPLHADPERQSTSGQMKAGTRVSNRSGQPSSSSPMESSLQPGVSDMNEETSV
PDVRDSSFQQSFMDEPPIAFNDSWGLDACADGDPGGFSLKLDDTEESSSGGRPGVSGPTA
TSSVQNPAGGPGPLTTSEDHNGLLDSKIWGSWEGDGGAGEEEDEEEEGLPLSQRADPAAQ
LKTPKLRKQKRFRPPVPITPTPHYSDMDTPELKNKLSSFGVRPLPKRQMVLKLKEIHQYT
HQLTSSEEEEGEEAGLPLGRAVSCARFKEPTAPAAAASPVRTDQEEAGDPLSASQGSNAS
STAASDESERSNPELALSSDGDSDSDVSSSQAASCLQDRLQAVRSFILSDSDLYSRILQY
QPLVLSQLQQQLKAAGVRLSAAKLVDYLDSQCITFTTAKPGHQAAGRRRGAWTGRGARGG
GRRNGASKR
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atggatgattccgagctggattttgtggacctctgctccaagttgctgaagcgcgtccgc
aagagagaaccagcaggcagaccgagcaggaaggcagaacagcagagctgcagcaaatca
accccgggggacaagagagcggttgatgagcaggatgaggattctctgtccgggttttca
gccactgggtcggaggtggtctgtggaggaaccgggcgtgactcgggggatgctgttcag
tcttctgcttttcctccagcagacgcagacctgagggcaaaagacaacgtactcctcagg
atgcaagagttcaagagagccagcccacagaagatgatgcacagcaacagaatcgagcca
gcaaagaccgacggctgtactctgactgcacagcatcaaaaagcagataaggcggcggcg
ccccgctctgggctcccagagagtgacgaggcgctggccctgcggctgcagcgggagctg
gacagggaggcagcagaggcccagatggtggacctggaggacggaggccttttcttctgt
cagatctgccaccgggacttgtcacacatgacccccgacgggcgcacacaacacctcaac
aggtgtttggatcagagcgaacagagcgcgccgtctctccccccgccctccgctgtcccc
aactgtcccatctgcggcaagaagttcaagagccagaagagccgctcggcccacctgaag
cgctgctccgcagacatgggcgtctccccgaccgttctgctgcaggctctgcagagacag
gccgaggagagccgcagttctgccgtcgccgccaacgcacacctagagacgggcggcatc
aaaaggaaagggccgcctcagccggagcttccagcaaggaagaagcccaggaagaaggcc
gaccggctggacgaggacaccatggtggctctggctctgtcctcctccctgctggagcag
cagaaggagcagcaggttcagagcggttcgtctcacagctccgtgacgccactgctgacg
tggaagccagatgctgctaaaggacgtgtcaaaaagaaaaaagtagccgtccctcgtcct
ccgccactcctcctagttcaggacgcagagacggccctggcgaggctgcaggaacgagtc
tctgctctgctgcttcgccgccggtcgccctctcctcccaccccgacgcgacgccccagc
aagctgcccggctggacaggtgctgcccccctctggcggaaaagtacactgctgggtgga
ggctccacctgtccgtctcagttctacgctgcggagctccagcacctgtttacggcggag
ttatcaaagccagatccggtcttctcaagcagcagcagcaagccggagtcttctgtccca
cctgccctgccctcccagacggcgtcctcatctccttccactccagggacgggagagctc
cacgtgggaagccaggccctccgagacctgatggagctggctgaagacggcatgactctg
acccaatacggatacgcggacaaagccaagcacccgagcggtttcatccaggaggaagag
ttggaggatcaggccgagccgtcggacgacaccgccagcagcagccgggcagtgaggagg
tcagatcagccggaggcagaccgagacgcagccagacatgagtcggtggcgctctccaag
ctggcctcagacctgagcagcatggttaacaaccctcagctcagtgatgtgcagctccag
gtggacagtggtgaggtctactttgcgcattccttcatggtgtacgctcgctgccccctg
ctggctgaaatggtgcatgaaagtgggtttggtgtgcaggaggagggcatggccgcagct
caaagggtgttgctaagcgacgtgccgggtcaggcggtgctggctctgctgcggtacctc
tacaccgcccactgctccgtcgctgcgtcgctgcggcctcacgtgctggagttggcgtcc
aggtttgacctgcaggagctggagcggctgtgtcatttccaaccggagaacatggcggcg
ggagacgacaggctcgacgtaaaccaggaagaaaacgtcaacaaccaaacggaccagacc
ttcgtggagctccttcaatccatgtggaacgaggaggactcagagggagacgccggggac
tcggacggaggaggacggtcggagggggatcggccagaggacgaggtcgctgcgggtgac
ggagaaatcggcgaggagcgagtgaacgaggaggagctggaggagatttatgagtttgcc
gccacgcagaggcagagggtaaaggaggaagaggagaaaaaggaggaggaggaagatgcg
gaacgagaacccggctcggaccgcagctacggtcggcttttctcccagtcctggggcgtc
taccaagatggagaggcttcatcctcgcctcctcttcttcctcatgaagcggcacccaag
cactctgccaggactctgcttcagtcgtcagcaagtttcgccgatgaatcctccctcaac
cttcccttccccgggccgtctccgtggcgaccagctcaggaggacggacacaggagaggc
gaagaagccgcagcagaaagccgagctcgtcgcagcgccctcccttcgcctgcgaggaga
gacgaggccgagctcatcgttctgtccgactccagcgaagaggcggaagccgatcggagc
ttcacggggatcaaacccggccagaacccgagtcccagagaatcggtctgtggttcccag
tacagtcccggtgatcccgccgggtgttcgccggagctttcctggctcgtcccttccaca
cctgtcaggtctccggtcggaaacacgaagaccgcctccatgcagactgacagcagcatg
tgcaggacgcggcttttccccagagtggacctcgcctcgccgtccaggaacacagtcccg
acctccagcactcctcttaaagcctccccagaacgcagagtctctcctgacaatcgaaag
agtactgaagtgtttgcagcccaccgttccgttagagattcctcaaagtacgaggctcct
ctgcagccgcgcagcatcagcagcacgccgctgcatgcggacccagagaggcagagcacg
tctggtcaaatgaaagcggggacacgtgtgtccaaccgttcaggtcagccctcgtcttct
tctccaatggagtccagtttgcagcctggcgtcagcgacatgaacgaagaaacgtctgtc
ccagatgtgagggactctagtttccagcaaagtttcatggatgagcctcctatagctttt
aacgattcctggggcctggacgcctgcgccgacggcgacccgggcggcttcagcctgaag
ctggacgacaccgaagagtccagctccggagggagacccggagtgtccggtccaacagct
accagcagcgtccagaaccctgctggaggtccaggcccgctgaccacgtcagaggaccac
aacggcctgctggactccaaaatatggggcagctgggagggcgatggaggagcaggagag
gaggaagacgaagaggaggagggtcttcctctgtctcagagagcggacccggcggctcag
ctcaaaactccaaaattgaggaaacagaaacggtttcgtccgccggtgcccatcaccccc
acgcctcactactctgacatggacacgccggagctcaagaacaaactcagcagcttcggc
gtgcggcctttaccgaagcgtcagatggtcctcaagctgaaggagatccaccagtacacc
caccagctgaccagctccgaggaagaggagggggaagaagcggggctgcccctcggcaga
gcggtctcctgcgcccggttcaaagagccgacggcgcccgctgctgccgcatcccccgtc
agaacggaccaagaggaagccggcgacccgctctctgcctcccagggctcaaacgcctcc
tccaccgccgccagtgacgagtcggaaaggtccaaccctgagctggctctctcctccgac
ggcgactcagacagcgacgtgtcgtcctctcaggccgcttcgtgcctccaggaccgcctc
caggcggtgcgctccttcatcctgtccgactccgacctgtacagccggatcctccagtac
cagcctctggttctctcccagctccagcagcagctgaaggcggcaggggtccgcctgagc
gccgccaagctggtggactacctggactcccagtgcatcaccttcaccacggcaaagccg
ggccaccaggcggccggccgcaggcggggagcgtggacaggccggggggcgagaggaggc
ggaaggaggaacggagcttcaaaacgctaa
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integrated database retrieval system
