Xiphophorus hellerii (green swordtail): 116719984
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Entry
116719984 CDS
T07363
Symbol
frem3
Name
(RefSeq) FRAS1-related extracellular matrix protein 3
KO
K23383
FRAS1-related extracellular matrix protein 3
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09190 Not Included in Pathway or Brite
09193 Unclassified: signaling and cellular processes
99992 Structural proteins
116719984 (frem3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Big_9
BatA
DUF4381
Motif
Other DBs
NCBI-GeneID:
116719984
NCBI-ProteinID:
XP_032418798
LinkDB
All DBs
Position
5:complement(3930826..3968541)
Genome browser
AA seq
3140 aa
AA seq
DB search
MAGCLQSSQLCKKWAFLRCLLLTLCLSSCLISVFSEPFDPSHLYYHKSGPNEDDIIIANN
GIRVPFGRSVFLDPGKDLITEVQPGDRCQITVLDNDPLTQKPGMLTPKRFPCSFGANEVK
YTHFGSRSPSKDRVKMQLRYDSHTDTVIVPFMLEVEVVFQQLEILLRNMPLNVEKLNGDS
SLIDKKALEFSFEDGVTQCKITTLVGAGGLPRYGTLLNSPPNGQLVDCDEFVNLGIHYKH
TAKTKSPNRDYIPMMVELQDIEGNTIMQEHFQTMVRIREGAENTAPKPSFVAMMMMEVDQ
FVMTAITSDMLAAEDVESDPDNLIFNITSPLSPQQGYIISTDDQNLPITSFNQRDIRNLK
IAYKPPSEDSDEERIFQLEFEIVDTDGAVSDPFAFMIVVKPMNTLAPVATKNTGQLLFEG
QSRALSSSQNLEISDEDNLEDVRITVVDGLKHGDLTVLGMRRKFFTPSDLDAGIVVYQHD
GSDTYSDNIILRMTDGRNEVEFLFPITIVPTDDEPPIINANTGLVLFKKEIMQISPFILS
ATDIDSEDSFIRFILEAPYSTVGELLLRQVEPPAEPSQWKFSETDEMFEQVVTEWSQKDI
LDGKLFYRHVGPHSTTTVTDLFVFRVQDDNNPPNQSGEHTFTIKILPVDDLPPVLFPGTT
LHMTVQEYELTFFRKKFLCYTDLDSDDRDLKYTITKVPTDTDENNLAPLGKIVLTDSPET
VITEFTQAQVNHHKVAYKPPDQELGITPKVAQFTFIVEDTAGNSADGLFTIFLQPVDNKP
PEIINTGFTVKETSTFIISSKELYATDTDTDDENIIFTLTQAPKYGQLQYLGIYMSNGET
FNLEDIANGLLTYLHGGEESLSDVIKLSVSDGFHEVPITVRVTIEPVDDETPTIMLPAGV
LGAAIDVLENGATEITSNVIQGRDKDTDDLMLAFIVEEPPRLGEILVNGAPAERFTQEDI
INGVVVYAHTSGEIGPVKVHDSFNLTLSDMSDQWVVGGNKVQGVTVHVTILPVDSIPPVV
SVGGQFVVMEGEKNVITISHIQAEDVDTNNDDILCTIIVQPTSGYVENISPATGSEKSRA
GTAITAFTIKDILLGHIYYVQSIHKGVEPVEDQFTFRCSDGINFSERHFLNIVIIPANDE
KPEIFTREFLVMEGMHLVIDTPVLNAADADIPEDELFFEIIKSPKHGAIIQQLSTGTVPV
ERFSLEQIKEAANIVYEHDDSETKEDSFDIRLSDGKHAVEKTVLIIVIPVDDETPRMAIN
DGLDVEIGETKVISNRALKATDLDSEDRELTYVLRYGPGQGYLQRINKFGNVLGNITLGM
NFTQDEIDKQRILYVHTGQEGIRDLLKFDVTDGINPLIDRYFYINIGSIDMVFPDVINKG
VTLKEGGKVTLTTDLLSTSDINSPDEYLSFSITRAPSRGHLECTDLPGVPISTFTQLQLA
GNKIYYIHTSDDEVKMDSFEFEVTDGYNPVFRTFRVSITDVDNKKPVITVHKLVVEEGET
KLITPFELTAEDRDTPDNLLRFTVTQVPVHGQLLFNNSRPITSFTKQNLNENLISYKHDG
TETNEDSFSFIVTDGTHTDFYVFPDTVYATRKPQMMTIHINTVDNGVPQIVVNKAAASLR
VLQTGHLGFVFTSKVLRSEDRDSPQKVLKYSVSEEPLHGFIMNVELGNHSINTFTQAEIN
DMKICYVLLDGSNATSDIFYFTVEDNGGNKLKPQPFRLNWAWISLEREYYLVDEDAKFLE
VTLKRRGFLGETSFVSIGTKDGSAEKDKDFRGRAQKQVQFNPGQTTATWRVKIFTDQEFE
TSETFEIQLSDPVMAVVEYPDAATVEIVDPGDESTVFIPQAEFKIEEDIGELLVPVMRSG
DASQELMVVCFTQQGTATGTIPTTVLSYSDYITRAEDHTSVLRFDKDEREKVCRIIIIDD
SLYEEEESFNVSLSMPMGGQLGASFPSTKVTILADSDDEPSLYFGEPEYVVEESSGYVEV
KVWRTGTDLSKIATVTVRSRKSDPVSAEAGLDYVGISRNLDFAPGVTMQTFRVTILDDLG
QPKLEGPETFDLVLRMPMNAVLGEPSKTTITINDTVTDLPKVQFKEGSYKVDESDGEVSA
MVYRSGDISLRSTVRCYTRQGSAQVMMDYSERPNTDASIITFLPGESEKPCVVGLMDDSV
HEEDEEFRLVLGSPKSKSPYGASIGEQKDALVTITDEKDKPIIRFSEIKYSVREPQVKGE
VAKVKIPILRFGDASKLSVVRVHTKDGSATSGEDYNPLSEDVEFKEGEKEHFVEIEILYD
GHREMREAFTVHMKPDDNMVAEIQMNKAIVYIEEMDSVADVTFPAVPHVVSLLMYDDTAK
TRDRPSPPNGYPVVCVTACNPKYQDFDKTGSICSAENINDTLTQYRWLISAPTGPDGVTS
PMREVDTNTFFTNTKSITLDSIYFQAGSRVQCAARAFNTNGDAGLELSSPIFVISTEEGM
CQPHIPGTVGAEPFSAKIRYTGPDDPDFPNLIKLTINMPHMDGMLPVISTRPLSNFELTL
SPDGTRVGNHRCSNLLDFNEIQTGYGFITDATKNPEIIGETSPYQYSTAMRSANSLRFYR
NLNLEACLWEFTSYYDMSELLNDCGGSIGTDGQVLNLVQSFVTLRVPLFVSYVFHSPVAV
GGWQHFDLQSELKLTFVYDTAILWQDGIGSPPEAELQGAMYPTSMRINEEGRLVVNFKTE
ARFRGQFVMSHPGTSVSSMVMCADIPGLTFTLALVRTEPTYNQPMQQWSFVSDFAVRDYS
GTYTVKLVPCIASPNGEFSIPPVCHPREPLTFDMDIRFQQVSDPVAAEFSLNTQMFLLSK
KELWLSDGSMGFGEGTDAAFSEGSTIYGRVMVDPVQNLGDSFSCSIEKVFLCTGADGYVP
KYNPTNREYGCLADAPSLLYRFKILDKAQPETQASAFGDVSFKAKLAQDASGAQTLVTQP
GSDGFMLSSSPLFQVAAGREWFIHTIYTLRSRENANRHIGKRSVEYLQHSVSSVAQPHVS
NAGGRQRRAAPALSGPALVQDIGIKNNRGTNIQHIALDRSDRMVVSQRQPWSPSGDRLLE
RPLLESSGREPADTSFLPMLVGIAALILLICLIAIVVILLLRRKRKEKEAQFPPYATSSS
SAYSGYRPAGMWSSSDSSEV
NT seq
9423 nt
NT seq
+upstream
nt +downstream
nt
atggctggttgtctgcaaagttcccaactttgcaaaaagtgggcatttcttagatgcctg
ctcttgactctgtgtctcagttcatgtcttatttcagtattttctgagccctttgatccc
agtcacctctattaccacaagtctggacctaatgaagacgacatcatcattgctaataat
gggatcagggtgcctttcgggagatcagtgtttttggaccctgggaaagacctgattaca
gaagtgcagcccggtgaccgctgccaaataacagttttggacaatgacccgctgactcag
aaacctgggatgctgaccccaaaaaggtttccctgttcatttggagccaacgaagtgaaa
tacactcactttggatctcggagccccagcaaggaccgtgtaaagatgcagcttcgctat
gattcccacacagatacggttatcgtcccattcatgttagaagtggaggtggttttccag
cagctcgagatcctcctcaggaatatgcctcttaatgtggagaaactcaatggggacagc
agcctgattgacaaaaaggctctggagttttcctttgaggatggggtcacgcagtgtaag
atcaccacgctggttggcgccggaggcctccccaggtatggcacgcttttgaatagtccc
cccaatggccaactggttgattgtgatgagtttgtaaatctgggtattcactataaacac
actgctaaaaccaaatcaccgaacagagactatattccaatgatggtagagctgcaggat
attgagggcaacacaataatgcaggagcacttccaaacaatggtcagaatcagagaaggt
gcagaaaacactgctcctaaacccagctttgtagcaatgatgatgatggaggttgatcag
tttgtgatgacggctattacaagcgacatgctagcagctgaagatgttgaatctgaccca
gacaatctgattttcaatattacttcacctctgagccctcagcagggttacataatcagc
acagatgatcagaatctccccattacttccttcaaccagagggacatcagaaatttgaaa
atagcatacaagcctccctcagaggactcagatgaagagaggattttccaattagagttt
gaaattgtagatactgacggcgcagtgtctgacccatttgcttttatgatagtggtgaaa
cctatgaacaccttagctccggttgcaaccaaaaatacaggtcagctactgtttgaaggc
caatcccgagctctttccagctcccagaatttggaaatcagtgatgaggataacctggaa
gatgtaaggattaccgttgttgatggtctgaaacacggagacctgactgtgctcggcatg
cgcaggaaattttttacaccatctgatctggacgctggcattgttgtgtaccagcatgat
ggcagcgacacctacagtgataacattattttgagaatgacagatggaaggaatgaagtg
gaatttttgtttcccatcactattgttcctactgatgacgagcccccaataatcaacgcc
aacaccggtctggtgctgtttaagaaagaaattatgcagatctcacccttcatcctgagt
gccacagatatagactcagaagactcatttataaggttcattctggaagcaccgtactcc
accgtgggggagctcttactcaggcaagttgagccacccgctgagccctctcagtggaag
ttcagtgagacagatgagatgtttgagcaggtggtaactgagtggtctcagaaggatatt
ctcgatggaaagctgttctatcgacatgtcggacctcacagcaccaccacagtgacggat
ttgtttgtgtttcgtgtccaggatgacaacaacccccctaatcagtcaggtgagcacacg
ttcaccattaaaatcctccctgtcgatgaccttcccccagtgctgttcccaggcaccacg
cttcatatgactgtccaggaatatgagctcactttcttcaggaagaaattcttgtgttat
actgatttagattcagacgacagagacctgaagtatacaatcactaaagtaccaaccgat
accgatgagaacaatctagcccccttgggtaagattgtactgactgacagccctgaaact
gtaattacagagtttacacaagcccaggttaatcaccacaaagtagcttacaagcctcca
gaccaggaactgggcatcactccaaaagtcgctcagttcacattcattgtggaggacaca
gctggtaactcagcagatggcttattcacaattttcctccagccagttgacaacaaaccc
ccagaaattatcaacacaggatttactgtcaaggaaacaagtacttttataattagcagc
aaggagttgtacgccactgacacagatacagatgatgaaaatatcatcttcactttgacc
caagctcctaaatacggacagctgcaatatttaggcatttatatgtcaaatggtgaaacg
ttcaatcttgaagatattgcaaacggcctcttgacttatctccatggtggagaggaatct
ctcagtgatgtaatcaaactttctgtgagtgatggtttccatgaggtccccattacggtg
agggtaactatagagccagttgacgacgagaccccgactatcatgctcccagctggcgtg
ttgggggccgccatcgatgtgttggagaacggagcaacagagatcaccagtaatgtcatt
caaggacgtgataaagacacggatgacctcatgctggctttcattgttgaggaacctcca
aggctgggcgaaattctagttaacggcgctccagctgagaggttcacccaggaggacatc
atcaacggagtggtggtgtatgctcacacttctggtgaaatcggtccagtcaaagtacat
gattccttcaacctaactctttctgatatgtctgatcagtgggttgtaggtggcaacaaa
gtccagggtgtgactgttcatgtgaccatccttcctgttgatagcattccacctgttgtc
agtgttgggggacaatttgttgtgatggaaggagagaagaatgtcattaccataagtcac
attcaagctgaggatgttgacaccaacaatgatgacatcctatgcaccattattgtccaa
ccaacatctggttatgtagaaaacatctccccagccacaggatctgagaaatcaagagct
ggtactgccatcactgcctttaccattaaagatattttgcttggtcacatctactacgtc
caaagcatccacaaaggagttgaacctgtagaggatcagttcacattccgctgctccgat
ggcatcaacttctctgaacgccacttcctcaacattgtcatcattccggccaatgatgag
aaaccagagatcttcacacgtgagtttctggtaatggaaggcatgcacttagtgattgac
actccggttttgaacgcagctgatgctgacatcccagaggacgagctgttttttgagatc
atcaaaagccccaagcatggggcgataatccaacagctaagcacaggcactgtccctgta
gaaaggttcagcttagaacagatcaaagaagcagccaacattgtctatgaacatgatgac
tctgagaccaaagaggacagttttgacatcaggctttccgacggaaaacatgcagtagag
aaaacagttctcatcattgttattcctgttgatgatgagacgccaagaatggctataaat
gatggccttgatgttgagattggggagacaaaggtaatcagtaacagggctttaaaagca
acagacctcgactctgaagatagagaactaacatatgttctgcgatatggtcctgggcaa
ggctaccttcagcgtataaacaaatttggtaatgttttgggaaacataaccctggggatg
aacttcacacaggatgaaatagacaagcaacgcattctgtatgtacacacaggccaggag
ggcatccgagacttgctgaaatttgacgtcacagatggcatcaatcctcttattgatcgc
tacttctacatcaacattggcagcattgacatggttttcccagatgtaatcaacaaaggt
gtgacactcaaagaagggggaaaagtaacactcaccactgacctccttagcacatctgac
atcaacagtcctgatgagtatctcagctttagcatcacaagagcacccagccgggggcat
ttagagtgcactgacctcccaggtgttcccatttccaccttcacccaactgcagctggct
ggcaacaagatctactacatccatacctcagacgacgaggtcaaaatggatagctttgag
tttgaggtgacagatggttacaatcccgtcttccgaaccttcagagtgtccatcactgat
gtagataacaaaaaacctgtcatcactgtgcacaagcttgttgtggaggagggagaaacc
aaactcattacaccatttgagctgacggctgaggatcgggacacgcctgacaacctgctc
cgcttcacagtcacgcaggtgcccgtgcacggccagctgctcttcaacaacagccggcca
attacatccttcaccaagcagaacctgaatgagaaccttatcagctacaaacatgatggc
acagagaccaacgaggacagcttttccttcatagtcacggacggcactcacacagacttt
tatgtttttcctgatacggtgtacgcgactcgcaagcctcaaatgatgaccatccacatc
aacacggtggataatggtgtgccccagattgtggtcaacaaagctgctgcttcattgaga
gtcctccaaacgggacacctgggcttcgtttttaccagcaaggtccttagatcagaggac
agagacagcccccagaaggtcctgaagtacagcgtgtctgaggagccgctgcatggcttc
atcatgaacgtggagctgggcaatcatagcatcaacaccttcacacaagctgaaatcaac
gacatgaagatctgttatgtgctgttggatggtagcaacgccacaagtgatatcttctat
ttcacagtcgaggacaatggtggaaacaaactcaagccgcagccgttccgtcttaactgg
gcctggatctctctggagcgggaatactacctagtggatgaagacgccaaattcctggag
gtgactctgaaacgcagaggcttcctgggggaaacctcttttgtcagtattggaacaaaa
gatggctccgctgagaaggacaaagatttccgtggcagagctcagaagcaagtccagttc
aacccaggccagacgacagcgacctggagggtgaagatcttcactgaccaggagtttgag
acctcggagacctttgagattcagctgtcggacccggtcatggcggtggtggagtaccct
gatgctgcaacggtggagattgtagatcctggagatgaatcaacagttttcattccacaa
gcagaattcaagatagaggaggatattggggagctactagtgccagtcatgcgatcaggc
gatgccagccaggaacttatggttgtctgtttcactcagcaaggtaccgccactggcacc
atacccaccactgtcctctcctactccgactacatcacccgtgctgaggaccacaccagt
gtgctgcgcttcgacaaggacgagagagaaaaagtttgccgaatcatcattattgatgac
tccctttatgaggaagaggagagctttaacgtcagcctcagtatgccgatgggcggtcag
ctgggggccagtttcccatccaccaaagtcacaattttggcagacagcgatgatgagcct
tcgctgtactttggggagcctgaatatgttgtggaggagagttcaggctatgtggaggtg
aaggtctggaggacgggtactgacctgtccaaaatcgccacggttacggttcgctccaga
aagagcgatcctgtttctgcagaagctggactcgactatgtcggcattagtcgcaacctg
gactttgctccaggtgtcaccatgcagacatttagagtgaccatcttggatgacctgggt
cagccaaaactggaggggccagagacctttgaccttgtgctgaggatgcccatgaatgct
gtattaggagaaccgagcaagacgaccatcaccatcaacgacactgtcactgacttgccg
aaggttcagtttaaggaggggagctacaaggtggatgaatctgacggcgaagtgagcgcg
atggtgtaccgcagcggagacatcagcctcagatccacagtgcgctgctacacccggcag
ggatccgctcaggttatgatggactacagcgagaggcccaacactgacgcctccatcatc
acctttctgccaggcgagtcggagaagccgtgtgtggttggcctgatggacgactcagtc
catgaggaagatgaggagttccgcttggtgctggggagtccgaagagcaaatccccgtac
ggagcctcaatcggggagcagaaggacgcgctggtcaccatcacagacgagaaagacaag
cccatcatccgtttttctgagatcaaatacagcgtgcgagaacctcaggtcaaaggtgag
gtggccaaagtgaagatccccatcttgcgttttggagacgcatcaaaactgtcagtagtg
cgggtacacacgaaggatggctctgccacgtctggagaggattacaacccactgtctgag
gatgtggagttcaaggaaggtgagaaggaacattttgttgaaatcgagatcctgtatgac
ggtcacagagagatgagagaggccttcacggttcacatgaagcctgacgacaacatggtg
gctgaaatacagatgaacaaggcgatagtgtacattgaggagatggacagcgttgcagat
gtcacgttccctgcagtgcctcatgtggtgtctctcctcatgtacgacgacacggccaaa
acccgagaccggcccagcccacccaacggataccctgttgtgtgtgtgacggcctgcaac
ccaaagtaccaggactttgataaaacgggttccatctgctctgcagagaacatcaatgac
actttgacccagtaccgctggttgatcagcgctccaaccggaccagacggagtgaccagt
cccatgagggaggtggacaccaacaccttcttcaccaacaccaaatccatcaccttggac
tcaatctactttcaagctggctccagagttcagtgcgcagcaagagccttcaacaccaac
ggagacgctggcttagaactgtccagtcccatctttgttatcagtacagaggaaggaatg
tgtcagcctcacatcccgggaactgtcggagcagaacccttctctgcgaagatccgctac
acgggtccagatgatccagactttcccaaccttatcaaactgaccatcaacatgccgcac
atggatggaatgctcccggtgatctccaccaggcctttgtctaactttgagctcacgctg
agcccggacggcacacgcgtggggaaccaccgctgctccaacctgctggactttaatgag
atccaaactggttacggcttcatcacagatgcaacaaagaaccctgaaatcatcggggag
acgtcgccgtaccagtacagcaccgccatgcgttcagccaattcactgcgcttctacagg
aacctgaacctggaagcctgcctctgggaattcaccagctactacgacatgtctgagctg
ctcaacgactgcggcggttccatcggcactgacggacaggtgttgaacctggtccagtct
ttcgtcactttgcgggttcctctgtttgtgtcctacgtcttccactcccctgtcgctgtt
ggaggctggcagcactttgacctgcagtcggagcttaagctcaccttcgtttatgatacg
gccattctgtggcaggacggcatcggcagcccacctgaagctgaactacaaggagccatg
tatcccaccagcatgcgcataaatgaggagggacgcctggtggtcaacttcaagaccgag
gctcgcttcaggggacagtttgttatgtctcatccaggaaccagtgtatcatccatggta
atgtgtgctgacattcccggactgacctttaccctcgctttggtcagaactgaaccgacc
tacaaccagcccatgcagcagtggagtttcgtctcagattttgcagtgcgggactactct
gggacctacacagtgaagctggttccctgcatcgcttcgcccaatggggagttcagcatc
cctcctgtctgccacccgagagagccgctcacttttgacatggacattcgcttccagcag
gtgagcgacccagtggcggctgaatttagtctaaacactcagatgttcctgctgtctaag
aaagagctctggttgtccgacggctccatgggctttggagaaggaactgatgctgctttt
tcagaaggctccacgatttacggccgtgttatggtagaccctgtccagaacctgggcgac
tccttctcctgcagcattgagaaggtcttcctctgcactggggcggatggatacgtcccc
aagtacaaccctaccaacagggagtatggctgcctggcagacgctccctctctgctctac
agattcaagatcttggacaaagcccagccagagactcaagcttcagcatttggggacgtt
tcttttaaggccaaactggcccaagatgcatctggagctcaaacgttggtcacacaacca
gggtcagacggtttcatgctctcttcttcaccactttttcaggtggctgctggtcgggaa
tggttcatccacactatctacaccctccgctccagagagaatgcgaatcgtcacattggc
aaacgcagcgtggagtacctccaacacagcgtctcttcggtcgcgcagcctcacgtctcg
aacgcaggcggtcgccaacgcagggccgccccggcgctctccggtcccgctctggtccag
gacattggcatcaaaaacaaccggggcaccaacatccagcacatcgctctggaccgatcc
gaccgcatggtggtgagccagcggcaaccctggtcgcccagcggtgaccgcctcctggag
cgccccctgctggagagctcgggcagagagccggctgacacctccttcctgcccatgctg
gtgggaatcgcagctctgatcttgctcatctgcctcatcgccatcgttgtcattctgctg
ctgaggcgcaagaggaaggaaaaggaagctcagttccctccgtacgccacttcctcctca
tctgcctactcaggctacaggcctgcaggcatgtggagcagttcagacagctctgaggtc
taa
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integrated database retrieval system
