Xiphophorus hellerii (green swordtail): 116720005
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Entry
116720005 CDS
T07363
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03030
DNA replication
xhe03410
Base excision repair
xhe03420
Nucleotide excision repair
xhe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116720005 (rfc1)
03410 Base excision repair
116720005 (rfc1)
03420 Nucleotide excision repair
116720005 (rfc1)
03430 Mismatch repair
116720005 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xhe03032
]
116720005 (rfc1)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116720005 (rfc1)
DNA replication proteins [BR:
xhe03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116720005 (rfc1)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116720005 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
AAA_30
AAA_17
AAA_5
RuvB_N
Rad17
AAA_14
AAA_16
NTPase_1
AAA_33
AAA_7
nSTAND3
Herpes_UL25
BRCT_2
AAA_18
RNA_helicase
AAA_19
Motif
Other DBs
NCBI-GeneID:
116720005
NCBI-ProteinID:
XP_032418853
LinkDB
All DBs
Position
5:complement(13599221..13611270)
Genome browser
AA seq
1176 aa
AA seq
DB search
MDIRRFFGPVSGKPAPNVDRKPDEKKKKKSSSEEDVKKKKKKKEEGSKVKSSKNEEQHKS
SEKKRKKRQVIESDSDEEEPVMKAKKSSKGKAATSKADPPPKKDPVQYVSETDSDSDNFQ
SLKKASKSKQNGANKKSEEDSCSPKVKERVKSPAKPPLSRGKTEIKSPKVPTTPKLAPPP
PPKQTLTSVLDYFGSGEIHRSDKKLVASTKRKAPTQELDDLISDEELARQLQMEEDMEQV
EKQVHEDEEFARTLAMLDTEPQPKKARKNSEEKPSPTTTPKKSSVSVPSKTSRTPPEDVI
SPSPQKSPAAVRACSKLAMMKKRDEAKDEGAKSKTPTSPRKNKISPKKEPRASSISDMKF
TPKAGTTPTALKTSPKKPESTSTSPDDAEKKKMHTLAFRNYLNRDGPRALGSKEIPEGAE
NCLEGCVFVLTGVLESMERDDAKALIERYGGKVTGNVSKKTNYLVQGRDSGASKLDKAES
LGTIILDEDGLLELIRTKPGKKSKYEIAAEAECKASKTRTPPSETSKVTPKAQKISPSKG
NSRSPKTPSPSKTGQRQRASGSSSSSTPTGRGSRQTARRELGLPNTPSSSSAPGPSPPSP
QGDAAGLLWVDKYRPRSLKGVIGQQGEQSCANKLLRWLQNWHRHHSGGPDKPAASRFGKF
GGGKDDGSGYKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVAESL
NNTSIENFYKGTSQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKNSKIPIICMCNDR
NHQKIRSLANYCFDLRFQRPRVEQIKGAMMSLAYKEGIKIPPPALNEIILASNQDVRQVI
HNLSMWSAKDKVMTYDRCKSDAARARKDMKLGPFDVCRKVFASGEETAHMSLIDKSDLFF
HDYSLAPLFVQENYLHVRPAAARGDMKSHLVLLSKTADSIADGDLVDRRIRSSQNWSLLP
TQAIFASVLPGELMRGYMSQFPVFPSWLGKHSSTNKHSRIVQELTAHMSLKTLSSRQAVN
LDYMHYLRQALLHPLQRHGAEGAAQAVQLLDDYKLLKEDVDSIMEISVWGGQPDPYSKLD
SKVKAAFTRAYNKEVHLTPYSLQAVKKGRRGGGGGGADLDGGDEGPDDQESGDEAEGLKA
DAMIKQKKTKTTKESTKEKKQESGKGKGKGKGKAKK
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttggaccggtatcaggcaagcctgccccaaacgtagaccga
aaaccagacgagaagaagaaaaagaagagttcctcagaagaagatgtgaaaaagaagaag
aagaagaaggaggagggctccaaggtcaaaagctccaaaaatgaagagcaacacaaaagc
agcgagaagaaaagaaagaaacgccaagttatagaatcggattcagacgaggaagagccg
gtgatgaaggctaagaaatcctccaaagggaaagctgcaaccagcaaagcagatccgcct
cctaagaaggatcctgtgcagtacgtctctgaaacagactcggacagtgacaactttcag
agtctgaagaaggcctccaagtccaaacagaacggcgctaataaaaagtcagaggaagac
agttgcagtcctaaagtcaaagagcgagtcaagtctcctgctaagcctcctttgagtcgg
gggaaaactgagataaagagtcccaaagttcctacaacccctaaactagcccctccgcct
cctcctaagcaaactctcacctctgtactcgactacttcggcagcggagagattcaccgc
tcagacaagaagctggtagccagcaccaaacgaaaggctccgactcaagagttagacgac
ctgataagcgacgaggaattggcccggcagctgcagatggaggaggacatggagcaggtg
gaaaaacaagttcatgaggacgaggagtttgccagaacgttggccatgctggacaccgag
ccacagcccaaaaaagctcgcaaaaactctgaggaaaaaccaagtccaaccacgaccccc
aagaaaagcagcgtgagcgtcccgtcgaagaccagtcggactcctccggaggacgttatc
agtccgtcgccccagaagagccccgctgctgtcagagcctgctccaagctggccatgatg
aagaagcgggacgaggcgaaggacgaaggcgcgaaaagcaaaacacccacttcaccgagg
aaaaacaaaatctctccgaaaaaagagccgcgtgcttcatcgatttcggacatgaaattc
acacccaaagcaggaacgacaccaacggcgctgaaaacgtctcctaagaagcccgagagc
acaagtacaagtcctgacgatgcggagaagaagaagatgcacactctagctttcaggaat
tacctcaacagagacggaccacgagcgctgggatccaaggaaatcccagagggagcagaa
aactgtttggaggggtgtgtgtttgtgctgactggagtcctggagtcgatggagagagac
gacgccaaagctctcattgagcgttacggaggcaaagtgacgggaaacgtcagcaagaag
accaactacctggtgcagggcagagacagtggagcgtccaaactggacaaggctgagagt
ttaggcaccatcatcctggatgaggacggcttgttggagttgatcagaaccaaaccaggg
aagaagtcaaagtatgagatcgctgcagaagctgagtgcaaagcctcaaaaaccagaact
cctccaagtgaaacctcaaaggtcacccccaaggctcagaagatctccccctccaagggg
aactccaggtcccccaagaccccgagcccctcaaagacgggccagaggcaaagagccagt
ggcagcagcagcagcagcactccaactgggaggggctccagacagacggcccgaagggag
ctgggccttcccaacacaccctcctcttcctcagctcctggaccctcccccccttcccca
cagggggacgctgccggtctcctgtgggtggacaagtaccgtccacgttctctgaagggt
gtgattggccagcagggggagcagagctgcgccaacaagctgctccgctggctgcagaac
tggcacagacaccacagcggaggaccggacaaacccgcagcatcgaggtttggtaaattt
ggaggagggaaggatgacggatcaggatacaaagctgctctgctctctgggcctccaggg
gtggggaagaccacaacagctgccctggtctgtgaggagctgggcttcagctacgtggag
atgaacgccagctgcactcgcagcaaaaacagcctgaaggaagtcgtggcagagtcgctc
aacaacaccagcatcgagaacttctacaaaggaacgtctcagacggtgagcagtaagcac
gtcctcatcatggacgaagtggacggcatggctgggaatgaagaccgaggaggaatccag
gaaatgatcggcctgatcaaaaactcaaagattcccatcatctgcatgtgcaacgaccgc
aatcaccagaagatcagatcgttggccaattactgcttcgacctgcgtttccagaggccg
cgggtggagcagatcaagggagccatgatgtctcttgcttataaagagggtatcaagatc
cctcctccagcgctcaatgaaatcatcttggcctccaaccaggacgtgcgacaggtgatt
cacaacctgagcatgtggtcggccaaagacaaggtgatgacgtacgaccggtgcaagtcc
gacgcggccagggcccgcaaggacatgaagctggggccgttcgacgtctgcaggaaggtg
ttcgcctcgggcgaagagacggcccacatgagcctcatcgacaagtccgacctcttcttc
cacgactactctctggctccgctcttcgtccaggagaactacctgcacgtccgtccggct
gcggctcgtggagacatgaagtcccacctggtgctgctcagtaagactgccgactccatc
gccgacggcgacctggtggacagacggatccgatcgagtcaaaactggtccctgcttccc
actcaggccatctttgccagcgtgttgccgggcgagctcatgagaggctacatgtctcag
ttccccgtcttccccagctggctgggcaagcactcctctaccaacaaacattcccgcatc
gtgcaggagctgaccgcacacatgagcttaaagaccctgagcagcagacaggcggtgaac
ctggactacatgcattacctgcgccaggcgctgctgcatccgctgcagaggcacggagcg
gagggagcggcgcaggccgtgcagctgctggacgactacaagctccttaaggaggacgta
gacagcatcatggagatcagtgtgtggggcgggcagcctgacccctactccaaactggac
tccaaggtgaaggcagctttcacgcgggcatataacaaggaggtccacctgaccccgtat
tccctccaagctgtgaagaaggggcgccgaggaggaggaggaggaggagcggatctggac
ggaggagacgaaggtccagatgaccaagagtctggggacgaagccgagggcctcaaagca
gacgccatgatcaaacagaagaagaccaaaacaactaaagagtcgacgaaggagaagaag
caagagtccgggaagggcaaaggcaaggggaaaggcaaagcaaagaaatga
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integrated database retrieval system
