Xiphophorus hellerii (green swordtail): 116720012
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Entry
116720012 CDS
T07363
Symbol
cacna1a
Name
(RefSeq) voltage-dependent P/Q-type calcium channel subunit alpha-1A isoform X1
KO
K04344
voltage-dependent calcium channel P/Q type alpha-1A
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04010
MAPK signaling pathway
xhe04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116720012 (cacna1a)
04020 Calcium signaling pathway
116720012 (cacna1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xhe04040
]
116720012 (cacna1a)
Ion channels [BR:
xhe04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
116720012 (cacna1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
116720012
NCBI-ProteinID:
XP_032418869
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All DBs
Position
5:26724347..26859356
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AA seq
2446 aa
AA seq
DB search
MARFGDELPNRYGGGGGGGGGGGGGAGGQGGPGRGGSRQGGPPGAQRMYKQSMAQRARTM
ALYNPIPVRQSCLTVNRSLFLFSEDNLVRKYAKKITEWPPFEWMILTTIIANCIVLALEQ
HLPDGDKTPLSERLEETEPYFIAIFCFESGIKILALGFALHKGSYLRNGWNVMDFVVVLT
GILSSVGSQLDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMIPLLQIGLLLFVAILM
FAIIGLEFYMGKFHTTCADPVTKEKVEDRPCGPKLPSRLCPNDSSCESGWIGPNYGITQF
DNILFAILTVFQCITMEGWTDMLYYSNDVEGSMWNWMYYIPLIIIGSFFMLNLVLGVLSG
EFAKERERVENRSEFLKLRRQQQIERELNGYLEWICKAEEVILAEEDGTGNFDGSRRRPT
IKTRNNKTELLNQEEGEDNIGDAVGFARSSIKSGKDGTNYSKKERRMRFFIRKIVKTQAF
YWTVLCLVGLNTICVAVVHYNQPELLSDFLFYAEFIFLGLFMSEMLIKMYGLGIQPYFHS
SFNCFDCVVIVGSIFEVVWATIKPGTSFGISVLRALRLLRIFKVTKYWAPLRNLVVSLLN
SMKSIVSLLFLLFLFIVVFALLGMQLFGGLFNFEEGTPPTNFDTFAAAIMTVFQILTGED
WNMVMYDGIESQGGVKDKGMVFSIFFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEE
EQEEAANQKTALQKAKEVAEVSPLSAANLSIAAKEQQKNHTKPNKSVWEQRTSEIRRQNL
MTSREALYNELEQDDWKVGEEGEEVSFPRKARGDVKTHLDRPLVVNPQDNRNNNTNKTPP
GELPLDQQYRRQDVDHRRRAAHHCHYHRHHHQKSTNPDGVDATQLMETNMGHGFSCTSLG
NVEGNVERHGDEEKHSHQSHRGHRHRNRECREARSVSPRHGKGADGNGETRRCRQHRRAA
READEGRRHQCRATEGDGEKSEEEGGQKARRHRHCNQERCRGHRVRNAYSFAHVREHHST
CPSLSTTRPIQQYNEDLDNFRNNSKLASAQEHPYDLPPDHPDHPDHLNNLLNCQDADTHT
LLHSMDSLILTSMAKPDYTSIDMPPVYPYPSTNAILQVNKNANTDQKKSEEKKEEEDEGE
DEDNAKRMPPYSSCFIMSTTNPFRKCCHYILTLKYFEFSILSVIAMSSIALAAEDPVKPD
SPRNNVLRYFDYVFTGVFTFEMLIKMVVLGLFLHQGSYFRDLWNILDFIVVSGALVAFAF
TPSSTRGSSKGKDISTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYM
LFMFIFAVVAVQLFKGRFFYCTDESKEFARDCRGEYLVYEKDEVKAEKREWKKYDFHYDN
VAWALLTLFTVSTGEGWPQVLKHSVDSTYEDQGPSPGYRMEMSIFYVVYFVVFPFFFVNI
FVALIIITFQEQGDKMMEDYSLEKNERACIDFAINAKPLTRHMPKNKLSFQYRMWHFVVS
PPFEYSIMALIALNTIVLMMKHYEANVAYDNVLKYLNIVFTAFFFMESILKIIAFGPLNY
FRDAWNVFDFVSVIGSITDILVTEFWDNFINLSFLRLFRAARLIKLLRQGETIRILLWTF
VQSFKALPYVCLLIAMLFFIYAIIGMQLFGNIALDEEEETAINEHNNFRTFIMALMLLFR
SATGEAWHEIMLACLGEKKCDPESGSTGKECGSTFAYTYFVSFIFLCSFLMLNLFVAVIM
DNFEYLTRDSSILGPHHLDEYVRIWAEYDPAACGRIHYKDMYSLLRVISPPLGLGKKCPH
RVACKRLLRMDLPVADDNTVHFNSTLMALIRTALDIKIAKGGADKHQMDAELRKEMMAIW
PNLSQKTLDLLVTPHKAATDLTVGKIYAAMMIMEYYRQSKTKKLQALREEQCSSLPNRTP
LMFQRMEPPSEGGGTEGQAGPGQNGLPGVQPDNINSIPPEGGLTESQSWMTAKAQEMFQK
TGNWSPDRPYPDDVHENRHNPQTVEMREMGRDGYSDTEPCHPVDGHGRTLSMPRLSADNQ
RRRHRPRGNNLSTITDNSPMRRSTSSLVHGRSGRGVRLDDYSLERVVSEEGRHGGGRRHR
DRSHRTSQRSLTRYTDADTGILSISCLGLGTDLSTTTQSGDLPPKERERDRGRTKDRRHH
HHHHRHHSSMDKERYDRHDYPHRQPQDRHWSRSPSEGPDGRGHRQGSSSVSGSPVPSTSG
TSTPRRGRRQLPQTPAVPRPHVTYSPAVRKPLYGPPGPGRLRSPSPRHFSPPDHDRGYHH
RTPSRHASPHHGGSSSRHGSPRSPRHQSPHSPLHGSPRSPHRNRWSGPPPGDSLEGDGPF
YERDYEYERHHEPPAYEQSLSHGNPHPHGGNPHPHPRSPRTARHGPPPAPHPHPRRVPNG
YRSSSPSPHRRGPPGAPHPHHRPPHARGPRKGLHEPYSETDEDDWC
NT seq
7341 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgctttggagacgagctacccaacaggtacggaggaggaggaggtggtggtggc
ggtggtggcgggggtgccggcggacaaggggggcccggccgcggcggcagcaggcaaggt
gggccccccggagcgcagcggatgtacaagcagtcgatggcccagagagcccggaccatg
gccctgtacaaccccatacccgtccggcagagctgcctaacggtcaaccgctccctcttc
ctcttcagcgaagacaacctggtgaggaagtacgccaaaaaaatcaccgaatggcctccg
tttgaatggatgatcctcaccaccatcatagcaaactgcattgtcctagctctggaacag
caccttcctgacggagacaagacgcctttgtccgaaagactggaagagacggagccctac
ttcatagccatcttctgtttcgagtctggaatcaagatcctggctttgggatttgcgtta
cataagggctcctatctgaggaacggctggaacgtcatggacttcgtggtcgtcctcact
ggaattctgtcgtctgtggggtctcagcttgacctgaggacgctccgagctgtcagagtg
ctgcggcccctaaaactggtgtctggaattcccagcctgcaggtggtgctcaagtccata
atgaaggccatgatccccctgcttcagatcggcctgctgctgttcgtggctatccttatg
ttcgccatcatcggcttggagttctacatgggaaagttccatacaacctgcgctgacccc
gtcacaaaggagaaagtggaagatcgcccatgtggtcccaaactaccctccagattgtgc
cccaacgactcatcgtgtgaaagtggctggattggaccaaactacggcatcactcagttt
gacaacatcctgttcgctattctgacagtcttccagtgcatcactatggaaggatggaca
gacatgctctactatagcaacgacgtggagggcagcatgtggaactggatgtactacatc
cccctcatcatcatcggctccttcttcatgctcaacctggtgctgggcgtgctttcaggc
gaatttgccaaagagagggaacgggtggagaacaggagcgagttcctcaagctgaggcgg
cagcagcagatcgagcgagagctcaacggatacctggagtggatctgcaaagcggaggag
gtgattctggctgaggaagacggcacggggaactttgatggttcgagacgaaggccaacc
atcaaaaccagaaataacaaaacagagctgttgaatcaagaggaaggagaggacaacata
ggagatgcagtaggatttgctcgctccagcataaagagcggtaaggacgggacgaattac
agtaaaaaagagcgacggatgcgattcttcatccggaagatagtgaagacgcaggccttc
tactggacagtgctctgcctggtgggcctcaacaccatctgtgtggccgtggtgcattac
aaccagccagagcttctttccgactttctcttctatgcagagttcatcttcctcggtttg
ttcatgtctgaaatgctgatcaaaatgtacggtctgggcatccagccctacttccactcc
tcatttaactgcttcgactgtgtggttattgttggtagcatctttgaggttgtgtgggcc
accataaaaccaggcacatcatttggaatcagcgtgttgcgagctctcaggctgttgcgt
atcttcaaagtaaccaagtactgggcgccactgaggaacctggtggtttcgctgttaaac
tccatgaagtccattgtcagcttgctcttcctcctcttcctcttcatcgtggtctttgct
ttgttggggatgcagctcttcggaggactattcaactttgaagaaggaactcctcctacc
aattttgatacatttgcagcagcaatcatgacggtgtttcagatcctgacaggagaggac
tggaacatggtgatgtacgacggcattgagtcgcagggaggagtaaaggacaaaggaatg
gtcttctccatcttcttcatcgtcctcacactctttggcaactacacgctgctgaacgtg
ttcttggctatcgctgttgacaatctggccaatgcccaggaactgactaaggacgaagaa
gagcaggaggaggcagccaatcaaaagacggcactgcagaaggctaaggaggtggcagag
gtcagccctctgtctgctgccaacctgtcgattgctgcgaaggagcagcagaagaaccac
accaagcccaataagtctgtgtgggaacagagaaccagcgagattcggcggcagaacttg
atgacgagtcgtgaggctctctacaatgaactggaacaggatgactggaaggtgggagaa
gaaggagaggaggtgtcattcccacggaaagcacgtggtgatgtgaaaacgcacctggac
agaccattggtggtaaacccgcaggacaatcgcaacaacaacaccaacaagaccccaccc
ggcgagctgccgctagatcagcagtatcgtcggcaggatgttgaccaccgccgccgcgct
gctcaccactgccactaccaccgccatcaccaccagaaatccaccaacccagacggcgtg
gatgcaacccagctgatggaaaccaacatgggccacggtttcagctgcacgtctctgggt
aacgtcgaaggaaacgtggagcgccacggggatgaagagaagcacagccaccagagtcat
cggggccatcggcacaggaacagagagtgcagggaggctcgtagcgtttctccccgtcac
ggcaaaggcgcagacggcaacggtgagacgaggaggtgcaggcagcaccgcagggcagcc
agggaggcggatgagggcagaagacatcagtgcagagcaacagagggagacggagagaaa
agcgaggaagagggtggacagaaggcaagacgacatcggcactgcaaccaggaacgatgc
aggggacatcgtgtcagaaatgcctattcctttgcccatgtcagggagcatcacagcacc
tgccccagcctctcaactacacggcccatacagcagtacaacgaggacctcgacaacttc
cgcaacaacagcaagctggccagcgcccaagagcacccttatgatctcccacctgatcac
ccagaccatccggaccatctcaacaacctgctgaactgccaggacgccgacacccacacc
ctgcttcacagcatggacagcctgatcttgaccagcatggcaaaacccgactacacatcg
atagacatgccccctgtgtacccgtacccctcgaccaacgcaatcttgcaagtgaacaag
aacgccaacactgaccagaagaagagcgaggagaagaaggaggaggaggacgagggtgaa
gacgaagacaacgctaagcgcatgcctccctatagttcctgcttcataatgtctaccacc
aatccgtttcgaaagtgctgtcactacatcctgactctgaagtattttgagttcagcatc
ctgtccgtcattgctatgagcagcatcgccctggcagcagaggaccctgtcaagcccgac
tcgccgcgaaacaacgtgctgcgttattttgactacgttttcacaggagtcttcacattt
gaaatgttgatcaagatggtcgttctcggcttgtttctccaccaagggtcttactttcgt
gacttgtggaacatactggactttatagtggttagtggtgctctggtggcctttgccttc
acgccgagcagcacccgggggagcagcaaaggcaaagacatcagtacaatcaaatctctg
cgtgtgctgagggtgctgcgtccccttaagaccatcaagcgtctccccaagttaaaggca
gtgtttgactgcgtggtgaactccctgaagaatgtgttgaacattttgatcgtctacatg
ctcttcatgttcatcttcgccgttgtggctgtgcagctgttcaagggtcgcttcttctac
tgcacagacgaatccaaagagtttgcgcgggactgcaggggcgaatatttagtctatgaa
aaagacgaggtaaaagccgagaagcgggaatggaagaagtacgattttcactacgacaac
gtggcttgggccttgctcaccctcttcaccgtctccaccggagaggggtggccacaagtg
ttaaagcactcagtggactctacttatgaggatcagggcccaagcccgggatacaggatg
gaaatgtccatcttttacgtggtgtacttcgttgtcttccctttcttctttgtcaacatc
ttcgtggctctcattatcatcaccttccaggagcaaggggataagatgatggaagactac
agcttagaaaagaacgagagagcctgtatagatttcgccattaacgccaaacctctgact
cgccacatgccaaagaacaaactgagcttccagtatcggatgtggcatttcgtagtgtcc
cctcccttcgagtacagcatcatggctctgattgcactcaacacgatcgtcctcatgatg
aagcattacgaagcaaatgtagcttacgataatgtgctgaagtacctgaacattgtgttc
accgccttcttctttatggaatctatcctgaaaatcattgcttttggtcccttgaactac
ttcagagacgcctggaacgtttttgattttgtgtcagtcattggaagcattactgacata
ttggtaacagagttttgggacaatttcatcaacttgagcttcctgaggcttttcagggcg
gctcgcctcatcaagctcctgagacagggagaaacgatccggatcttactgtggacgttt
gtccagtccttcaaggctctgccgtatgtgtgtctgctcatagccatgctcttcttcatc
tatgccatcattggcatgcagttgtttggaaacatagctcttgacgaagaggaagaaact
gctatcaacgagcataacaacttcagaacattcattatggccctaatgctgctgttcaga
agtgctacgggtgaggcgtggcatgaaatcatgctggcatgcctgggagagaagaaatgc
gacccagagtcaggaagtaccgggaaggagtgtggcagcaccttcgcctacacctacttt
gtctcctttatttttctctgctccttcctgatgctgaatctctttgtggccgtcatcatg
gacaacttcgagtacctcaccagagactcgtccatcttggggccgcaccacttggacgaa
tacgtaaggatatgggccgagtacgacccagctgcctgcgggcgcatacattataaggat
atgtacagtttattgcgagttatctcccctcctctgggccttggcaagaaatgcccacat
agggtggcctgcaagaggctcctgcgcatggatctgcctgttgccgacgacaacacagtg
cattttaactccaccctcatggctctgatcaggacagcactggatataaagattgccaag
ggcggtgcagataagcaccagatggacgcggagctgaggaaggagatgatggctatctgg
ccaaatttatcacagaagactctggacctgctggttactccgcacaaggcagccacagac
ttgacggtgggcaaaatctacgctgccatgatgatcatggaatactacagacagagcaag
accaaaaagctgcaagccctgcgagaggaacagtgctcctcccttcctaaccgaacgcca
ttaatgtttcagcgcatggagccaccctctgagggagggggcacggagggccaggcgggg
ccaggccagaacggtctgcccggcgttcagccggacaacatcaacagcatacctcctgaa
ggtggcttgactgaaagccaatcgtggatgacggctaaagcacaggaaatgttccaaaag
accgggaactggagcccggaccggccctaccccgacgacgtccacgagaaccgccacaat
ccccagactgtagagatgagggagatggggcgggacgggtactccgacactgagccctgt
cacccagtggacgggcatgggcggacgctctccatgccccgcctctcggcagacaaccaa
cggaggagacacaggccccgtggaaataacctcagtaccatcaccgacaacagcccgatg
cgtcgctccacctccagtctggtccacgggcgctcaggtcgcggcgtgaggctggacgac
tactctctggagagggtggtgtccgaggaggggagacacggcggcgggcgcaggcacagg
gaccgaagtcatcgcacttcgcagcgatcgctgaccagatacacagacgccgacacaggt
atcctatctatttcatgtctaggtctgggtacagacctcagcaccaccacacagtcaggt
gacctgcctcccaaggagcgtgagcgggaccgcgggcgcaccaaggaccggcgtcatcac
caccaccatcaccgccatcacagctcaatggacaaggagcgctatgatcgccatgactac
ccacatagacaaccccaggaccgccactggtcccggtcccccagcgaagggccagacggg
agaggtcaccgacaggggagtagttcggtaagtggcagcccggtcccctccacctcgggg
accagcactccacggagaggccgccgccagctgccacagactcctgccgtcccacgcccg
cacgtcacctactcccccgccgtccgaaagcccctctacggccccccgggcccgggtcga
ttgcgctccccatcccctcgacacttctctccgccggaccacgaccggggctaccaccac
cggaccccgtcacgtcacgcctcccctcaccacggcggctcctcgtccaggcacggctcg
ccgcgctcgcctcggcaccagtcgccgcactcgccgctccacgggtcacctcggtctccg
caccggaaccgctggagcggccccccgccgggggacagcctggagggtgacgggcccttc
tacgagagggattacgagtatgagcggcatcatgagcctcccgcctacgagcagagcctc
tcccatggcaaccctcatccgcatggtggaaaccctcacccacacccacgctcaccaagg
actgctcgtcacgggcccccgccggcccctcacccgcatccacgtagggttcctaatggc
taccgttcatcctcaccttccccgcataggaggggaccgccaggggcaccgcaccctcac
cacaggcctccccatgccagagggccccgcaagggcctgcatgaaccttacagtgagacg
gacgaggatgactggtgctag
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integrated database retrieval system
