Xiphophorus hellerii (green swordtail): 116720074
Help
Entry
116720074 CDS
T07363
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116720074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116720074
NCBI-ProteinID:
XP_032418990
LinkDB
All DBs
Position
5:complement(2016364..2035109)
Genome browser
AA seq
1473 aa
AA seq
DB search
MDKVTAAKVVSSGGGAAASSSSVVKKSVTTSGVTSQSDFSFSSGGSGGRVAAGGSEDTSS
SVLIKSSSSHRCGFGAGNERITTVGTSSAQSSGERSGAAVASGRGERSKEAGGGSSSMSY
SFGSGSRETKKEGGLGAVTVSTVTKSSYASGGFREGKKGSASSGIMYSPPPKERKSVTTM
AAALSDVFDESSDSSLEYSRKKYGSSTATTASATRGRSQSRESEIRARLQSASPPARWTE
LDDVKRLLRGNRSTSTSPTQSPNNTLPIPKKASVEAKATSESSSGPIDQYGSVWSGDVSS
GYYSSNPNNYTATSHLYPSGAGVQNNLTLSSSSANAGQSVSGSVPVYGVQNNLTSPTVFS
PAGAGAQIVYGVQKNVSGITAPTVRPSSPTIYEASGKDFNFVLIEKENAPIKKETELLIM
DKDTGKHFVSAAPATLSGTYSEDSLKREKEKLLSSAVDKGTDAKSSTLKSTTKDKATYAA
IHKDELGFGFCSCCSWWKWLLALVFTLLLLLGLLIGLIVLGVEVGRLKNRVHTLESATGI
VSALTDNSIYLGPGGGIGARSGQRRAALQSTVQQLLRDELQSNDMRETLAYSLKGEKGEP
GPIGDPGALGQKGDSGFPGLPGPPGQIGHSGLDGPRGPKGNPGEPGPEGQSGQRGREGPM
GPRGESGPPGVGEKGDKGSQGEPGRPGPAGAPGPLGPKGAAGEQGISGVPGVPGPKGFQG
EAGPSGAKGDRGAPGVPGSKGDNGERGPRGPVGESGTPGPQGPSGPKGSKGSGGESGSIG
LPGARGLPGLPGDVGPQGPPGIQGPPGVAGIPGQPGGKGEPGSPGKVIGPINSDTVAIPG
PPGPAGPPGSAGPPGLSGPIGPAGVPGQPGTKGERGDKGDKGDQGQRGEPGTGLPGPPGL
PGSQGEPGPLGPPGEGKQGPPGRRGPPGDPGVGTPGPRGEKGEPGSFLPTSETFFAGPPG
PPGPPGKEGAQGFQGEPGQPGLPGTPGFPGPPGPPGGPVIAGGEPGSSFIPGPPGPPGPP
GPPGSESPAVGQYIADYLQSDSIRQYLAGPPGPPGEPGSPGVSEDALVDNVASRVISYIQ
SSGLGAPGPPGPPGSVSVNDIISLLQRDEVRLYLMGPPGPPGPPGGPGISGLSFNPQEVA
ERVYSLLNQRGALGAPGAPGPPGPPGPPGNLLATGFQSLIGPPGPPGAQGVPGPQGPPGP
PGPPGFGSYVSSDIRDYLQSVSLKGPPGPPGPPGPEGPPGPIGRMVSFTDHNNRDLLKPE
RQDYEFDGGDGLSRPMFGPPGPPGPPGPPGHKGESGLGSSTEWGPNSIDLSIMAERLTDY
IKAHGVLDGIVENYNSRIFQGPPGPPGPPGPTWFGSHGNATNIMEIIEAVRQQSRPGPAI
HGPRGPPGPPGPPGESRLFGSHTNVVDIMDYIKVHGVIVGPPGRPGPKGDQGLPGLTGAK
GERGYPGPQGYRGPKGDRGDFSLTTRRRRSSGV
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atggacaaggtgacagcagcgaaggtggtgagctcaggtggaggagctgcagccagcagc
agctcagtggtcaaaaagtcagtgacaacctctggagttacatcacagagtgatttttct
ttcagctccggtgggtcaggtggacgagttgcagcaggaggatcggaagatacgagcagt
tcagttctgatcaaatctagcagctcccaccgctgtggatttggagccgggaacgaacgc
atcaccaccgtaggaacttcttctgcccagtcctcaggtgagaggtcaggggccgctgtg
gcctcagggagaggagagcggtctaaagaggccggaggagggtcctctagcatgtcctac
agttttggaagtggaagcagagaaactaaaaaagaagggggtcttggtgctgtgactgtt
tccacggtgaccaaaagcagctacgcatcaggagggttcagggaagggaagaagggctca
gcatcctctggcattatgtactcacctcctccaaaggagaggaagagtgtgaccaccatg
gcagctgctctgtcagacgtctttgacgaaagctcagattcttccctggagtacagcagg
aagaagtatgggagttcaactgcaacgacagcttcagccactagagggagaagtcaaagc
agagagagtgagatcagagccaggcttcaaagtgcttcacctccagccagatggacggag
ctggatgacgtgaagcgcctgctgaggggaaaccgctccaccagcaccagccccacccag
tcccccaacaacacactgcccattcccaagaaggccagtgtggaagccaaggccacatct
gagagctcctcaggtcccatcgatcagtacggcagcgtttggtcaggggatgtgagcagt
ggatattacagctcaaaccccaacaactacaccgctacctcccatctttacccgtcaggt
gcaggagtccagaacaacctgactctcagctcttcctctgcgaacgccggacaatctgtc
agcggctccgtgccagtatatggtgtgcagaataacctgaccagtccaacggtcttctca
cccgctggtgccggcgcacagatagtttatggtgtgcagaaaaatgtctctggaataact
gcacccacagtgagacccagcagtcccaccatttatgaggcctcagggaaagacttcaac
tttgtgctgatagagaaggagaacgctcccatcaagaaggagacggagctgctcatcatg
gacaaagacactgggaagcactttgtgtcggctgcgccagccactttgtcaggcacttac
tctgaggactcgctgaagagggagaaagagaaacttttgtccagcgcagtggataaagga
actgatgccaaatcttcaaccttgaaatctaccacaaaagacaaagcaacctatgcagcg
atccataaagacgagttgggttttgggttctgctcctgctgcagctggtggaagtggctg
ctggccctcgtcttcaccctgctgctcctcctggggctcctcatcggacttatcgttttg
ggtgtggaggtgggacgcctgaagaaccgtgttcatactctggaatccgccactggcatt
gtatcagccctaacagataattcaatctaccttggacctggaggaggcataggagccaga
tcaggacagaggagagccgccctgcagtcaaccgttcagcagctgctcagagacgaacta
caatcaaatgatatgagagaaactcttgcttattctcttaaaggagagaagggagagcca
ggacctataggtgatccaggggcacttggacaaaaaggcgatagtggctttcctggactg
ccaggtcctcctggacagattggacactcaggactggatggaccaaggggaccaaaagga
aatccaggtgaaccaggtccagaaggacaatcagggcagaggggacgggagggaccaatg
ggtcctcggggggagtctggaccacctggtgttggagagaaaggagataaaggttctcag
ggtgaaccaggacgtcctggtcctgctggagctcctggaccccttggtccaaaaggtgct
gctggagagcagggtatctctggagtcccaggcgtacctggtccaaagggattccaaggt
gaagctggaccttctggagccaaaggtgaccgtggagccccaggtgttccaggaagtaaa
ggggacaatggagaaagaggacctcgtggaccagtgggtgaatcaggaactcctggacct
caaggcccatctggaccaaagggatctaaaggaagtggtggtgaatcgggttcaatagga
cttcctggtgctagaggtttaccgggtctccctggtgacgtcggtccccaaggacctcct
ggaatccaaggacccccaggtgttgcaggaattccaggccagcccggtggtaaaggtgaa
ccaggatctcctggcaaagtcatcggcccgataaactctgacactgtggctattcctgga
cctccaggaccagctggacctccaggttctgctgggcccccaggtttgtctggtcccatt
ggtcctgctggagtcccaggccaaccaggtacaaagggagaacgaggggataagggagac
aagggggaccaaggtcaacgtggagagccagggactggccttcctggacccccagggctc
ccagggtcccaaggtgaacctgggcctctggggcctcctggtgagggtaagcaggggccc
ccgggccgcagaggccctcctggagatccaggtgttggaactcctggacctcgaggagag
aaaggagagcctggcagcttcttgccaacatctgaaaccttctttgctggaccaccagga
cctccaggtccacctggtaaagaaggagcacaaggattccaaggtgaaccaggtcagccg
gggcttccagggactccagggttcccgggacctccaggacctccaggtggcccagtaata
gcaggaggggaacctggaagctcattcattcccggaccacctggaccaccgggaccacca
ggaccacctgggagtgaatcacctgctgttggccagtacattgctgactatctccaaagc
gacagcatcagacagtacttggctggacctcctggacctcctggagaaccaggctctcct
ggtgtttcagaagacgccctggtggataacgtagccagtcgagttatctcctacatccag
agttccggcctgggggcgcctggcccacctggcccacctggatccgtctctgtcaatgac
atcatcagtctattgcaacgagatgaagtgaggctgtaccttatgggtccaccaggccca
ccaggacctcctggaggtccaggtatcagcgggctctcgtttaacccccaggaggtggct
gaacgcgtctacagcctcttgaatcagagaggggcgctgggtgcacctggagctccagga
cctcctgggcctccggggcctcctgggaacctgttggcaactggatttcagtctcttatc
ggccctccaggaccccctggtgcacagggtgttcctgggccacaaggtccgcctggcccc
cccggaccgccaggatttgggagctatgtcagctcggacatccgtgactacctgcagagt
gtttccctcaaaggccctccaggccctccagggccccctgggccagagggccctcctggt
ccaatcggacgaatggtttcttttacagaccacaacaatagagacctgctgaagcctgaa
agacaagattatgagtttgatggtggtgatggtttgagtcgacccatgtttggacctcct
ggtccaccggggccccctggacctccgggacacaagggagagtcaggtttgggcagtagc
accgagtggggcccgaactctattgacttatccatcatggctgaaagactgactgattac
atcaaagctcatggcgttctggacggtatcgttgagaactacaatagcaggatcttccag
ggtcctccagggccacctgggcctccaggccccacctggtttggttcccatggaaacgcc
acaaatattatggaaattatcgaagctgttaggcagcagagccgccctggacctgccatc
cacgggccccggggaccacccggccccccgggtccaccaggagagagccgactgtttggt
tctcacaccaacgttgttgatataatggactacatcaaagtccatggagtgattgtggga
ccaccagggagaccaggaccgaaaggggaccaaggacttccaggactaacaggagcaaaa
ggtgaacgaggttatcctgggcctcagggatacagaggaccaaagggtgacagaggagat
ttctcgctgacaacaagaagaaggagaagttctggtgtttga
DBGET
integrated database retrieval system
