Xiphophorus hellerii (green swordtail): 116720086
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Entry
116720086 CDS
T07363
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04517
IgSF CAM signaling
xhe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
116720086
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116720086
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xhe04812
]
116720086
Cytoskeleton proteins [BR:
xhe04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
116720086
Intermediate filaments
Intermediate filament-binding proteins
116720086
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_11
SCAR_helical
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
116720086
NCBI-ProteinID:
XP_032419009
LinkDB
All DBs
Position
5:complement(276225..307890)
Genome browser
AA seq
2374 aa
AA seq
DB search
MTPPLELSQSERSIQTQHNHWCGGPEAARISRPIMMTTVAAEYDPMELHGQYSSSDTVNN
RWDDDWDNENSSARLFERSRIKALADEREAVQKKTFTKWVNSHLSRVSCRITDLYLDLRD
GRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHR
LTLGLIWTIILRFQIQDISVETEDNKEKRSAKDALLLWCQMKTAGYSNVNIHNFTTSWRD
GMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVDHPDEK
SVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAIETEKMIEKYESLASDLLEWIEQTIII
LNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYMPR
EGKLISDINKAWERLEKAEHERELALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRL
VSQDNFGFDLQAVEAATKKHEAIETDIAAYEERVQAVVAVAKELEAERYHDIKRIAARKD
NVIRLWEYLLELLKARRQRLEMNLGLQRVFQEMLYIMDWMDEMKMLLLSQDYGKHLLGVE
DLLQKHALVEADIAIQADRVKAVVNNANKHSVADSGYKPCDPQIIKDRVAHLEFCYQELT
QLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQILSSMEHGKDLTGAVRLLSQQRALE
DEMSGRAGHLQHTIAEGRAMVDAGHFGAAKIQERVSDLQAQWVALEQLAAVRKKRLEEAL
AMHQFQADADDVDAWTLDALRIVSSGETGHDEFSTQALVRKHKDAAAEVASYRSVIDSLH
EQVTLLPKEEAESEVVQGRLAGIEERYKEVSELTKLRKQALQDALALYKMMSEADACEVW
IDEKEQWLNSMEIPEKLEDLEVIQHRFENLEPEMNNQASRVAVVNQIARQLIHSGHPSET
NIKTQQDKLNNRWSQFRDLVDQKKESLNSALGVQNYHLDCNETKSWIKEKTKLIESTQEL
GNDLTGVMALQRKLTGMERDLVAIEDKLGDLRGEAQRLAEEHPDQASAITDRMAEITAVW
DEMKNTLKTREESLGEARKLQQFLRELDDFQSWLSRTQTAIASEDMPNTLSEAEKLMAQH
ESIKNEIHNYEEDYQKMRDMGEMVTQGQVDAQYMFLRQRLQALDTGWNDLLKMWENRQNL
LSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEMPTTLEGAEGAIKKQEDFMTTMDANEEK
INGVVEAGRRLAGDGNINAERILERVASIDDRHKKNREAAVELLMRLKDNRDLQKFLQDC
QELSLWISEKMLTAQDMTYDEARNLHSKWLKHQAFMAELQSNKEWLDKIQKDGTLLVSEK
PETEAVVKEKLASLHTLWEKLESTTQTKAQGLFDANKAELFTQSCADLDKWLGSLEGQIQ
SDDYGKDLTSVNILLKKQQMLENQVDVRQREVVELQSQVKALGQEVKDTDEVDGRRRVVE
KKFQELLEPLRCRRDFLVASREVHQFNRDVEDELLWAQERMPVATSTEHGHNLQTVQLLI
KKNQTLQKEIQGHQPRINDILERSRSLLQDKSSNTDLIRQRLADLQQLWKELMEEVEQRH
SRLEEAHKAQQYYFDAAEAEAWMSEQELYMMSEEKAKDEQSAVTMLKKHQIMEQAVEDYA
ETVHQLSKTSRGLVAAGHPESERISMRQSQVDKLYAGLKDLSEERRGKLDERLRLFQLNR
EVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDAVNRLADEL
INAGHGDAATVAEWKDGLNEAWADLLELIDTRTQILAASFELHKFYHDAKEILGRIADKQ
KKLPEEVGRDQNTVETLQRMHNTFEHDIQALGTQVRQLQEDAARLQSAYAGDKADDIQRR
EGDVLEAWRSLLEACDGRRLRLLDTGDKFRFFSMVRDLMLWMDDVIRLIEAQEKPRDVSS
VELLMNNHQGIKAEIDARNDSFTACIELGKALLARKHFASEEIKEKLLQLTDKRKEMIDK
WEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEPYLSSRELGRSVDEVEKLIKRHEAFEKS
AATWEERFSALERLTTMELLEVRRQQEEEERMRKPPGPEPVLVQQDGPQQQSAVTQNGLP
SDQDQDSPQDAVEGGGLVNGMVERGSKEPSPAPSPTSARKSGGSQSATMPARSQEAPALL
EGPLHRKHEWEGPNKKASNRSWHHVYCVIRGGELSFYKDGKAAAQGAPYHGEAAFGLKDA
ACDVASDYKKKKHVFKLRVSDGNEFLFQAKDEEEMSSWIQAVLSAERPAPGAAPGTPPSG
RAQTLPASVSLPAESSPGKRDKEKRFSLFSKKKQ
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgacccccccattagagctcagccaatcagagcgcagcatccagactcaacataatcat
tggtgtggtggccctgaagcggcccgtatcagccgacccatcatgatgacgacggtggcg
gccgagtacgacccgatggagctgcacggccagtacagcagcagcgacaccgtcaacaac
cgctgggacgacgactgggacaacgagaacagctccgcccggctcttcgagcgatcgcgc
atcaaggccctggcagatgaacgtgaagcggtccagaagaagaccttcaccaagtgggtc
aactcccacctgtccagagtctcctgcaggatcaccgacctttacctggacctgagggac
ggccgcatgctcatcaagctgctggaggttctgtccggagagaggctgccgaagcccacc
aaaggccggatgcgcatccactgcctggagaacgtggacaaagcgctgcagttcctgaag
gagcagcgggttcacctggagaacatgggatcccacgacatcgtcgacggcaaccaccga
ctcactctgggcctcatctggaccatcatcctgcgcttccagatccaggacatcagtgtt
gagaccgaagacaataaggagaagcgatcggccaaggacgccctgctcctgtggtgccag
atgaagacggccggttattccaacgtcaacatccacaacttcaccaccagctggagagac
ggcatggccttcaacgccctcatccacaaacacagacctgacctgatcgacttcgacaag
ctgaagaagtccaatgctcactacaacttgcagaacgcgtttaacctggcggagcagcac
ctgggcctcaccaagctactggacccagaagatatcagcgtggaccatcctgatgagaag
tctgtcatcacctacgtggtcacctactaccactacttctccaagatgaaggcgctgaag
gtggagggcaaacgcatcgggaaggtgttggacaacgccatcgagaccgagaagatgata
gagaagtacgagtcgctggcgtcggacctgctggagtggatcgaacagaccatcatcatc
ctcaacaacaggaagttcgccaactccctggtgggagtccagcagcagctgcaggccttc
aacacgtaccggaccgtggagaaaccgcccaagttcacagagaaggggaacctggaggtt
ctgctcttcaccatccagagcaagatgagggccaacaaccagaaggtctacatgccccgc
gaggggaagctcatctcagacatcaacaaggcctgggaacgcctggagaaggcggagcat
gagagggagctggctcttcggacggagctgatccgacaggagaaactggagcagctggcc
agacgctttgaccgcaaggcagccatgagggagacctggctcagtgaaaaccagaggctg
gtgtctcaggacaactttggcttcgaccttcaagccgtggaggcggccaccaagaagcac
gaggccatcgagacggacatcgcggcgtacgaggagcgtgttcaggctgtggtcgccgtg
gcgaaggagctggaggcggagcgttaccacgacatcaagcgcatcgcggccagaaaggac
aacgtgatccggctgtgggagtacctgctggagctgctgaaggcccgccggcagcggctg
gagatgaacctgggcctgcagagggtcttccaggagatgctctacattatggactggatg
gacgagatgaagatgctgctgctgtctcaggactacgggaagcacctgctgggcgtggaa
gacctgctgcagaaacacgcgctggtggaggccgacatcgccatccaggccgacagggtg
aaggccgtcgtcaacaacgccaacaagcactcggtggccgacagcggctacaagccctgt
gatcctcagatcatcaaggaccgggtggcccacttggagttctgctaccaggagctgacc
cagctggccgctgagcgccgtgcacgtctcgaggaatctcgccgactctggaagttcttc
tgggaaatggcggaggaagagggctggatccgggagaaggagcagatcctgtcctccatg
gagcacggcaaggacctgaccggggcggtgcgcctcctgagccagcagcgggccctggag
gacgagatgagtggccgggccggacacctgcagcacaccatcgctgagggccgggccatg
gtggatgccggtcactttggtgctgccaagatccaggagcgagtctcagacctgcaggct
cagtgggtagcgctggagcagcttgcagcagtgagaaagaagagactggaggaagctctg
gccatgcaccagttccaggccgatgcggacgatgtggatgcgtggacactggacgctctg
cgcattgtctccagtggagagacgggccatgatgagttctccacccaggctctggtcagg
aagcacaaggatgctgcagcggaggtggccagctaccgttcggtcatcgactctctgcat
gagcaggtcaccctgctgcccaaagaggaggcggagtcagaggtcgtgcagggccgccta
gctggcattgaggagcgctacaaggaagtgtccgagctcacgaagctgaggaagcaggcg
ctccaggatgcactggctctctacaagatgatgagtgaggctgacgcctgcgaagtttgg
atcgacgagaaggagcagtggttgaacagcatggagattcctgagaaactggaggacctg
gaggtgatacagcacaggtttgagaatctggagccagagatgaacaaccaagcgtctcgc
gttgctgtggtgaaccagatcgcccgacagctgattcacagcggccatccgagcgagaca
aacatcaagactcagcaggataaactgaacaacaggtggagccagttccgagacctggtg
gaccagaagaaggagtccctgaactctgcactgggtgtgcagaactatcacctcgactgc
aatgagaccaaatcctggatcaaagaaaagaccaaactaatcgagtccacccaggagctg
ggcaatgacctcaccggagtcatggctctgcagaggaagctgaccggcatggagcgagac
ttggtggccatcgaagacaagctgggtgacctgcggggtgaagcccagaggctggctgag
gagcatcctgaccaggccagcgccatcacagaccggatggctgagatcactgccgtctgg
gacgagatgaagaatactctgaaaacacgagaggagtccctgggcgaagccaggaagctg
cagcagttcctgcgagagcttgacgacttccagtcctggctgtcccgcactcagacagcc
atcgcctccgaagacatgcccaacacgctgtctgaggcagagaagctgatggctcaacac
gaaagcatcaaaaacgagatccacaactacgaggaggactaccagaagatgagagacatg
ggggagatggtgacgcagggccaggtggacgcccagtacatgttcctgaggcagcggctg
caggcgctcgacaccggctggaacgacctgctcaaaatgtgggagaaccggcagaacctg
ctgtctcagtcgcacgcctaccagctgttcctgagggacaccaagcaggcagaggctttc
ctcaacaaccaagagtacgtgctggctcacacagagatgccgaccaccctggagggcgct
gagggcgccatcaagaagcaggaggacttcatgaccacaatggacgccaacgaggagaag
atcaacggtgtggtggaggcaggcaggaggctggctggtgatgggaacatcaacgctgag
cgcatccttgagagagtggcctccatcgacgacaggcacaagaagaacagggaggcagca
gtggagctgctgatgagactgaaggacaaccgcgatcttcagaagttcctgcaggactgc
caggagctctctttatggatcagtgagaagatgctgacggctcaggatatgacctacgac
gaggccaggaacctgcacagcaagtggctgaagcaccaggccttcatggccgagctgcag
tccaacaaggagtggctggacaagatccagaaggatgggacgctgctggtgtcagagaag
ccagagacggaggcggtggtgaaggagaagctggcgtcactccacaccttgtgggagaag
cttgagtccaccactcagaccaaagctcagggtctgtttgacgccaacaaggccgagctg
tttacacagagctgtgccgacttggacaagtggctgggcagcctggagggccagatccag
tccgacgactacggcaaagacctgacatctgtcaacatacttctgaagaaacagcagatg
ctggagaaccaggtggatgtgcgccagagggaggtggtggagttgcagagccaagtgaag
gcccttggtcaagaggtgaaggacacagatgaggtggacgggaggagacgggtggtggag
aagaagttccaggagctgctggagccactgcggtgtcgcagggacttcctggtggcatcc
agagaagtccatcagttcaaccgtgatgtggaggatgagcttctctgggcccaggagagg
atgccagtggccacatccactgagcatggacacaacctgcagacagtccagctgctcatc
aagaagaaccagacgctgcagaaggagatccagggccatcagcctcgcatcaacgacatc
ctggagcgcagccgcagcctactgcaggacaagtcctccaacaccgacttgatccggcag
cgcctggccgacctgcagcagctgtggaaggagctgatggaggaggtggagcagcggcac
agccgactggaggaggcccacaaagctcagcagtactactttgacgccgctgaggccgag
gcttggatgagtgaacaggagctctacatgatgtcagaggagaaagccaaggacgagcag
agcgccgtaaccatgctgaagaagcatcagatcatggagcaggctgtggaggactacgca
gagaccgtccatcagctgtccaagaccagccgaggactagtggctgccggacaccctgaa
agcgagcggatcagcatgcgccagtctcaggtggacaagctgtacgccggcctgaaggac
ctgtctgaggagaggcggggcaagctggacgagaggctccgcctcttccagctcaacagg
gaggtggacgacctggagcagtggatcgccgaacgggaggtggtggccgggtctcacgag
ctgggccaggactacgaacatgttacgatgctacaggaacgtttccgggagtttgcgcgg
gacaccgggaacatcgggcaggagagagtggacgccgtgaatcggctggcggacgagcta
atcaacgccgggcatggcgacgcggccacagtggcggagtggaaggacgggctgaacgag
gcctgggccgacctgctggagctcatcgacactcggacgcagatccttgccgcctccttc
gagctccacaagttctaccacgacgccaaggagatcctgggacgcatcgcagacaagcag
aagaagctgccggaggaggtcggccgggaccagaacacagtggagacgctgcagaggatg
cacaacaccttcgaacacgacatccaggcactgggaacacaggtgaggcagcttcaggag
gacgccgcgcgcctgcagtcggcatacgccggagacaaagccgacgacatccagcgacgg
gagggtgacgtgttggaggcgtggaggagcctgctggaggcctgcgacggacgcaggctc
cgcctcctcgacactggggacaagttccggttcttcagcatggtccgtgacctgatgctc
tggatggacgacgtgatccggctcatcgaggcccaggagaagcccagagacgtttcctcc
gtggagctgctgatgaacaaccatcagggcatcaaagcggagatcgacgcccgcaacgac
agcttcacagcctgcatcgagctgggcaaggccctgctggcccgcaagcacttcgcctca
gaggagatcaaggagaagctgctgcagctcaccgacaagaggaaggagatgatcgacaag
tgggaggaccgctgggagtggctccgcctcatcctggaggtgcaccagttctcgcgggat
gcgggcgtggccgaggcctggctgctgggccaggagccctacctgtccagccgggagctg
ggccgcagcgtggacgaggtggagaagctcatcaagcgccacgaggcctttgagaagtcc
gccgccacctgggaggaacgcttctccgccctggagcggctgaccacgatggagctgctg
gaggtcaggaggcagcaggaggaagaggagaggatgaggaagccaccgggtccagaaccg
gttctggtccagcaagacggaccccagcagcaaagcgccgtgacccagaacggactccca
tcggatcaggaccaggactctcctcaggacgccgtggaaggcggcggcctggtgaacggc
atggtggagcgcggatccaaggagccgagccccgccccctcgccgacctcggccaggaag
tcaggcggcagccagtcggccacgatgccggcccgcagccaggaggcgccggcgctgctg
gaggggccgctacaccgcaagcacgagtgggaggggcctaacaagaaggcgtccaacagg
tcctggcaccacgtgtactgtgtgattcgcggcggggagctgagcttctacaaggacggc
aaggcggcggcccagggcgccccgtaccacggggaggcggccttcggcctgaaggatgcc
gcctgtgacgtcgcctccgactacaagaagaagaaacatgtcttcaagctcagagtctcc
gatgggaacgagtttctgttccaagccaaagatgaagaggagatgagctcgtggatccag
gccgtgctgagcgctgagcgccccgcccccggcgccgccccgggcacgccgccctccggg
cgcgcgcagacgctcccggccagcgtgtcgctgcccgccgagtcgagcccggggaaacgg
gacaaggagaaacgcttcagcctgttcagcaagaagaaacagtag
DBGET
integrated database retrieval system
