Xiphophorus hellerii (green swordtail): 116720086
Help
Entry
116720086 CDS
T07363
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116720086
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xhe04812
]
116720086
Cytoskeleton proteins [BR:
xhe04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
116720086
Intermediate filaments
Intermediate filament-binding proteins
116720086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
PH_11
CAMSAP_CH
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
116720086
NCBI-ProteinID:
XP_032419009
LinkDB
All DBs
Position
5:complement(276225..307890)
Genome browser
AA seq
2374 aa
AA seq
DB search
MTPPLELSQSERSIQTQHNHWCGGPEAARISRPIMMTTVAAEYDPMELHGQYSSSDTVNN
RWDDDWDNENSSARLFERSRIKALADEREAVQKKTFTKWVNSHLSRVSCRITDLYLDLRD
GRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHR
LTLGLIWTIILRFQIQDISVETEDNKEKRSAKDALLLWCQMKTAGYSNVNIHNFTTSWRD
GMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVDHPDEK
SVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAIETEKMIEKYESLASDLLEWIEQTIII
LNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYMPR
EGKLISDINKAWERLEKAEHERELALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRL
VSQDNFGFDLQAVEAATKKHEAIETDIAAYEERVQAVVAVAKELEAERYHDIKRIAARKD
NVIRLWEYLLELLKARRQRLEMNLGLQRVFQEMLYIMDWMDEMKMLLLSQDYGKHLLGVE
DLLQKHALVEADIAIQADRVKAVVNNANKHSVADSGYKPCDPQIIKDRVAHLEFCYQELT
QLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQILSSMEHGKDLTGAVRLLSQQRALE
DEMSGRAGHLQHTIAEGRAMVDAGHFGAAKIQERVSDLQAQWVALEQLAAVRKKRLEEAL
AMHQFQADADDVDAWTLDALRIVSSGETGHDEFSTQALVRKHKDAAAEVASYRSVIDSLH
EQVTLLPKEEAESEVVQGRLAGIEERYKEVSELTKLRKQALQDALALYKMMSEADACEVW
IDEKEQWLNSMEIPEKLEDLEVIQHRFENLEPEMNNQASRVAVVNQIARQLIHSGHPSET
NIKTQQDKLNNRWSQFRDLVDQKKESLNSALGVQNYHLDCNETKSWIKEKTKLIESTQEL
GNDLTGVMALQRKLTGMERDLVAIEDKLGDLRGEAQRLAEEHPDQASAITDRMAEITAVW
DEMKNTLKTREESLGEARKLQQFLRELDDFQSWLSRTQTAIASEDMPNTLSEAEKLMAQH
ESIKNEIHNYEEDYQKMRDMGEMVTQGQVDAQYMFLRQRLQALDTGWNDLLKMWENRQNL
LSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEMPTTLEGAEGAIKKQEDFMTTMDANEEK
INGVVEAGRRLAGDGNINAERILERVASIDDRHKKNREAAVELLMRLKDNRDLQKFLQDC
QELSLWISEKMLTAQDMTYDEARNLHSKWLKHQAFMAELQSNKEWLDKIQKDGTLLVSEK
PETEAVVKEKLASLHTLWEKLESTTQTKAQGLFDANKAELFTQSCADLDKWLGSLEGQIQ
SDDYGKDLTSVNILLKKQQMLENQVDVRQREVVELQSQVKALGQEVKDTDEVDGRRRVVE
KKFQELLEPLRCRRDFLVASREVHQFNRDVEDELLWAQERMPVATSTEHGHNLQTVQLLI
KKNQTLQKEIQGHQPRINDILERSRSLLQDKSSNTDLIRQRLADLQQLWKELMEEVEQRH
SRLEEAHKAQQYYFDAAEAEAWMSEQELYMMSEEKAKDEQSAVTMLKKHQIMEQAVEDYA
ETVHQLSKTSRGLVAAGHPESERISMRQSQVDKLYAGLKDLSEERRGKLDERLRLFQLNR
EVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDAVNRLADEL
INAGHGDAATVAEWKDGLNEAWADLLELIDTRTQILAASFELHKFYHDAKEILGRIADKQ
KKLPEEVGRDQNTVETLQRMHNTFEHDIQALGTQVRQLQEDAARLQSAYAGDKADDIQRR
EGDVLEAWRSLLEACDGRRLRLLDTGDKFRFFSMVRDLMLWMDDVIRLIEAQEKPRDVSS
VELLMNNHQGIKAEIDARNDSFTACIELGKALLARKHFASEEIKEKLLQLTDKRKEMIDK
WEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEPYLSSRELGRSVDEVEKLIKRHEAFEKS
AATWEERFSALERLTTMELLEVRRQQEEEERMRKPPGPEPVLVQQDGPQQQSAVTQNGLP
SDQDQDSPQDAVEGGGLVNGMVERGSKEPSPAPSPTSARKSGGSQSATMPARSQEAPALL
EGPLHRKHEWEGPNKKASNRSWHHVYCVIRGGELSFYKDGKAAAQGAPYHGEAAFGLKDA
ACDVASDYKKKKHVFKLRVSDGNEFLFQAKDEEEMSSWIQAVLSAERPAPGAAPGTPPSG
RAQTLPASVSLPAESSPGKRDKEKRFSLFSKKKQ
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgacccccccattagagctcagccaatcagagcgcagcatccagactcaacataatcat
tggtgtggtggccctgaagcggcccgtatcagccgacccatcatgatgacgacggtggcg
gccgagtacgacccgatggagctgcacggccagtacagcagcagcgacaccgtcaacaac
cgctgggacgacgactgggacaacgagaacagctccgcccggctcttcgagcgatcgcgc
atcaaggccctggcagatgaacgtgaagcggtccagaagaagaccttcaccaagtgggtc
aactcccacctgtccagagtctcctgcaggatcaccgacctttacctggacctgagggac
ggccgcatgctcatcaagctgctggaggttctgtccggagagaggctgccgaagcccacc
aaaggccggatgcgcatccactgcctggagaacgtggacaaagcgctgcagttcctgaag
gagcagcgggttcacctggagaacatgggatcccacgacatcgtcgacggcaaccaccga
ctcactctgggcctcatctggaccatcatcctgcgcttccagatccaggacatcagtgtt
gagaccgaagacaataaggagaagcgatcggccaaggacgccctgctcctgtggtgccag
atgaagacggccggttattccaacgtcaacatccacaacttcaccaccagctggagagac
ggcatggccttcaacgccctcatccacaaacacagacctgacctgatcgacttcgacaag
ctgaagaagtccaatgctcactacaacttgcagaacgcgtttaacctggcggagcagcac
ctgggcctcaccaagctactggacccagaagatatcagcgtggaccatcctgatgagaag
tctgtcatcacctacgtggtcacctactaccactacttctccaagatgaaggcgctgaag
gtggagggcaaacgcatcgggaaggtgttggacaacgccatcgagaccgagaagatgata
gagaagtacgagtcgctggcgtcggacctgctggagtggatcgaacagaccatcatcatc
ctcaacaacaggaagttcgccaactccctggtgggagtccagcagcagctgcaggccttc
aacacgtaccggaccgtggagaaaccgcccaagttcacagagaaggggaacctggaggtt
ctgctcttcaccatccagagcaagatgagggccaacaaccagaaggtctacatgccccgc
gaggggaagctcatctcagacatcaacaaggcctgggaacgcctggagaaggcggagcat
gagagggagctggctcttcggacggagctgatccgacaggagaaactggagcagctggcc
agacgctttgaccgcaaggcagccatgagggagacctggctcagtgaaaaccagaggctg
gtgtctcaggacaactttggcttcgaccttcaagccgtggaggcggccaccaagaagcac
gaggccatcgagacggacatcgcggcgtacgaggagcgtgttcaggctgtggtcgccgtg
gcgaaggagctggaggcggagcgttaccacgacatcaagcgcatcgcggccagaaaggac
aacgtgatccggctgtgggagtacctgctggagctgctgaaggcccgccggcagcggctg
gagatgaacctgggcctgcagagggtcttccaggagatgctctacattatggactggatg
gacgagatgaagatgctgctgctgtctcaggactacgggaagcacctgctgggcgtggaa
gacctgctgcagaaacacgcgctggtggaggccgacatcgccatccaggccgacagggtg
aaggccgtcgtcaacaacgccaacaagcactcggtggccgacagcggctacaagccctgt
gatcctcagatcatcaaggaccgggtggcccacttggagttctgctaccaggagctgacc
cagctggccgctgagcgccgtgcacgtctcgaggaatctcgccgactctggaagttcttc
tgggaaatggcggaggaagagggctggatccgggagaaggagcagatcctgtcctccatg
gagcacggcaaggacctgaccggggcggtgcgcctcctgagccagcagcgggccctggag
gacgagatgagtggccgggccggacacctgcagcacaccatcgctgagggccgggccatg
gtggatgccggtcactttggtgctgccaagatccaggagcgagtctcagacctgcaggct
cagtgggtagcgctggagcagcttgcagcagtgagaaagaagagactggaggaagctctg
gccatgcaccagttccaggccgatgcggacgatgtggatgcgtggacactggacgctctg
cgcattgtctccagtggagagacgggccatgatgagttctccacccaggctctggtcagg
aagcacaaggatgctgcagcggaggtggccagctaccgttcggtcatcgactctctgcat
gagcaggtcaccctgctgcccaaagaggaggcggagtcagaggtcgtgcagggccgccta
gctggcattgaggagcgctacaaggaagtgtccgagctcacgaagctgaggaagcaggcg
ctccaggatgcactggctctctacaagatgatgagtgaggctgacgcctgcgaagtttgg
atcgacgagaaggagcagtggttgaacagcatggagattcctgagaaactggaggacctg
gaggtgatacagcacaggtttgagaatctggagccagagatgaacaaccaagcgtctcgc
gttgctgtggtgaaccagatcgcccgacagctgattcacagcggccatccgagcgagaca
aacatcaagactcagcaggataaactgaacaacaggtggagccagttccgagacctggtg
gaccagaagaaggagtccctgaactctgcactgggtgtgcagaactatcacctcgactgc
aatgagaccaaatcctggatcaaagaaaagaccaaactaatcgagtccacccaggagctg
ggcaatgacctcaccggagtcatggctctgcagaggaagctgaccggcatggagcgagac
ttggtggccatcgaagacaagctgggtgacctgcggggtgaagcccagaggctggctgag
gagcatcctgaccaggccagcgccatcacagaccggatggctgagatcactgccgtctgg
gacgagatgaagaatactctgaaaacacgagaggagtccctgggcgaagccaggaagctg
cagcagttcctgcgagagcttgacgacttccagtcctggctgtcccgcactcagacagcc
atcgcctccgaagacatgcccaacacgctgtctgaggcagagaagctgatggctcaacac
gaaagcatcaaaaacgagatccacaactacgaggaggactaccagaagatgagagacatg
ggggagatggtgacgcagggccaggtggacgcccagtacatgttcctgaggcagcggctg
caggcgctcgacaccggctggaacgacctgctcaaaatgtgggagaaccggcagaacctg
ctgtctcagtcgcacgcctaccagctgttcctgagggacaccaagcaggcagaggctttc
ctcaacaaccaagagtacgtgctggctcacacagagatgccgaccaccctggagggcgct
gagggcgccatcaagaagcaggaggacttcatgaccacaatggacgccaacgaggagaag
atcaacggtgtggtggaggcaggcaggaggctggctggtgatgggaacatcaacgctgag
cgcatccttgagagagtggcctccatcgacgacaggcacaagaagaacagggaggcagca
gtggagctgctgatgagactgaaggacaaccgcgatcttcagaagttcctgcaggactgc
caggagctctctttatggatcagtgagaagatgctgacggctcaggatatgacctacgac
gaggccaggaacctgcacagcaagtggctgaagcaccaggccttcatggccgagctgcag
tccaacaaggagtggctggacaagatccagaaggatgggacgctgctggtgtcagagaag
ccagagacggaggcggtggtgaaggagaagctggcgtcactccacaccttgtgggagaag
cttgagtccaccactcagaccaaagctcagggtctgtttgacgccaacaaggccgagctg
tttacacagagctgtgccgacttggacaagtggctgggcagcctggagggccagatccag
tccgacgactacggcaaagacctgacatctgtcaacatacttctgaagaaacagcagatg
ctggagaaccaggtggatgtgcgccagagggaggtggtggagttgcagagccaagtgaag
gcccttggtcaagaggtgaaggacacagatgaggtggacgggaggagacgggtggtggag
aagaagttccaggagctgctggagccactgcggtgtcgcagggacttcctggtggcatcc
agagaagtccatcagttcaaccgtgatgtggaggatgagcttctctgggcccaggagagg
atgccagtggccacatccactgagcatggacacaacctgcagacagtccagctgctcatc
aagaagaaccagacgctgcagaaggagatccagggccatcagcctcgcatcaacgacatc
ctggagcgcagccgcagcctactgcaggacaagtcctccaacaccgacttgatccggcag
cgcctggccgacctgcagcagctgtggaaggagctgatggaggaggtggagcagcggcac
agccgactggaggaggcccacaaagctcagcagtactactttgacgccgctgaggccgag
gcttggatgagtgaacaggagctctacatgatgtcagaggagaaagccaaggacgagcag
agcgccgtaaccatgctgaagaagcatcagatcatggagcaggctgtggaggactacgca
gagaccgtccatcagctgtccaagaccagccgaggactagtggctgccggacaccctgaa
agcgagcggatcagcatgcgccagtctcaggtggacaagctgtacgccggcctgaaggac
ctgtctgaggagaggcggggcaagctggacgagaggctccgcctcttccagctcaacagg
gaggtggacgacctggagcagtggatcgccgaacgggaggtggtggccgggtctcacgag
ctgggccaggactacgaacatgttacgatgctacaggaacgtttccgggagtttgcgcgg
gacaccgggaacatcgggcaggagagagtggacgccgtgaatcggctggcggacgagcta
atcaacgccgggcatggcgacgcggccacagtggcggagtggaaggacgggctgaacgag
gcctgggccgacctgctggagctcatcgacactcggacgcagatccttgccgcctccttc
gagctccacaagttctaccacgacgccaaggagatcctgggacgcatcgcagacaagcag
aagaagctgccggaggaggtcggccgggaccagaacacagtggagacgctgcagaggatg
cacaacaccttcgaacacgacatccaggcactgggaacacaggtgaggcagcttcaggag
gacgccgcgcgcctgcagtcggcatacgccggagacaaagccgacgacatccagcgacgg
gagggtgacgtgttggaggcgtggaggagcctgctggaggcctgcgacggacgcaggctc
cgcctcctcgacactggggacaagttccggttcttcagcatggtccgtgacctgatgctc
tggatggacgacgtgatccggctcatcgaggcccaggagaagcccagagacgtttcctcc
gtggagctgctgatgaacaaccatcagggcatcaaagcggagatcgacgcccgcaacgac
agcttcacagcctgcatcgagctgggcaaggccctgctggcccgcaagcacttcgcctca
gaggagatcaaggagaagctgctgcagctcaccgacaagaggaaggagatgatcgacaag
tgggaggaccgctgggagtggctccgcctcatcctggaggtgcaccagttctcgcgggat
gcgggcgtggccgaggcctggctgctgggccaggagccctacctgtccagccgggagctg
ggccgcagcgtggacgaggtggagaagctcatcaagcgccacgaggcctttgagaagtcc
gccgccacctgggaggaacgcttctccgccctggagcggctgaccacgatggagctgctg
gaggtcaggaggcagcaggaggaagaggagaggatgaggaagccaccgggtccagaaccg
gttctggtccagcaagacggaccccagcagcaaagcgccgtgacccagaacggactccca
tcggatcaggaccaggactctcctcaggacgccgtggaaggcggcggcctggtgaacggc
atggtggagcgcggatccaaggagccgagccccgccccctcgccgacctcggccaggaag
tcaggcggcagccagtcggccacgatgccggcccgcagccaggaggcgccggcgctgctg
gaggggccgctacaccgcaagcacgagtgggaggggcctaacaagaaggcgtccaacagg
tcctggcaccacgtgtactgtgtgattcgcggcggggagctgagcttctacaaggacggc
aaggcggcggcccagggcgccccgtaccacggggaggcggccttcggcctgaaggatgcc
gcctgtgacgtcgcctccgactacaagaagaagaaacatgtcttcaagctcagagtctcc
gatgggaacgagtttctgttccaagccaaagatgaagaggagatgagctcgtggatccag
gccgtgctgagcgctgagcgccccgcccccggcgccgccccgggcacgccgccctccggg
cgcgcgcagacgctcccggccagcgtgtcgctgcccgccgagtcgagcccggggaaacgg
gacaaggagaaacgcttcagcctgttcagcaagaagaaacagtag
DBGET
integrated database retrieval system
