Xiphophorus hellerii (green swordtail): 116720168
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Entry
116720168 CDS
T07363
Name
(RefSeq) multiple PDZ domain protein-like
KO
K06095
multiple PDZ domain protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
116720168
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Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
L27_2
DUF6288
Motif
Other DBs
NCBI-GeneID:
116720168
NCBI-ProteinID:
XP_032419189
LinkDB
All DBs
Position
5:complement(12217062..12280764)
Genome browser
AA seq
1873 aa
AA seq
DB search
MEIMDAQCALEAVERLQAKLRERGEAPTQEKLSVLKTVLQSPLFLHILSLQQAQPKPPVK
GKGVSKSVSLNCGPCLDLPVGLKALSHSDSYTWAVENRKSFQKDGSNSSLGSHELSFSDI
YPDNFSHKESQYCTPPRISRTMSMGRNLSAIAHERRHIEIIELINDGKGLGFGIVGGRST
GVMVKTILPGGAAGRDTRLRSGDQILHIGDTDLAGMSSEQVAQVLRNAGSRVKLLIARDV
TKPNYLSSPALNQDTLDDKPSDLNDDYEFSIQFTKNSRGLGFSISSYVGDLNSVYSAGVM
VKSIVKGSSADQDGQMRVGDIILSVDGVSLQGCSEQRAMEVLRRTGPVVRLRLLRKAICL
RHILPPVPPLQPLRHSHSLHEGSPYKSGLNKIQETGISSLREISRRAAYASRRPRHDPRD
GVKLTPEEEENLRKRWQDAVGHRFEVTVCQLERFSETSGLGISLEARAGHHYLCSILPEG
PVGQSGKIFTGDEIMEVNGIPLIGQTHKEVVNVLKELPVQVYLVCCRIVPPSVHDSDEEA
NDDVCLSLKELLAEFNDKLDHGCVIPCPTAEDITKRGVPPMSPPLAMWEKEAQIVELEKG
ESGLGFSILDYQDPEDASKTVLIIRSLVPGGVADQDGRLLPGDRLMFVNETDLEGSSLDY
AVHVLKSTEYGLVQIGVSKPLPLELCGGLTPIAERSARPSTDDTDSHTQVSLLAETAEAN
FNGTTWNAEDHSLSQPCYTENQLRYRCCTMEDDSGQQAPPLPPRTSFERTITVVRGNRSL
GMSVSAIKDGTGILVRSVVQGGSVCQDGRLGVGDVILAINGELASNLSSAQARSMLRRHS
VIGPEMRITYVPAHQVDEHRTRLCLPPLASISTDSPSSSPILPTPEPESVSARSSCPPAS
SALRLSASVKYKTTTAPEPPIVRATVSFKAVKGPAIVPTITLASDTSWQVPKSLQKSPNS
KVEDEDVKERADETNEGVKVKNPQVKIKVDGKEEDNEEVCSHAAWSWDQPKSVQLTRAPS
QSLGISIMGGRGMGRRLNSGEMMRGVFIKHISPDSPAALNGTLRVGDRILEVSGVDLRDA
SHEQAVEAIRRAGDTVHLLVQSGLDRTQSPNPINHERLSPIPLSDSHNNKEAETLSSLFR
LSPANPFTPTPFKAPSPTSDRMDRRSPVNVTTAADAAAEDGDDTGRKKMLQRYGSLSGKL
HMIELEKDPAAHGLGIRLAGNEEGSRARMSVYVEGIDPNGPAGLDGRIHVGDELLEINGQ
ILYGRSHQNATTIINNAPSKVKIILIRNKSGQMLKRIRREDEDTVDSKTDAAEGESHGID
HVILHQEGRIKVGDRVVAVGDEPIAGLSVEKVSSLILKDPVTVKRSISQSKTIPFLSSQS
FPSSLSHHPHLPAVSSEPRPISQSSSTSLGTEQTSPEECSHWPASSPSTSDPRSCPVLPG
RETTIEICKENLGLGLSIVGGCDTLLGAVIIHEVNDGGAAQRDGRLQAGDQILEVNNIDL
RQATHDEAIAVLRLTTQQVRLCVFRHQEAYREEDLWDIFSLELTPRPEEGLGFTTMGKSD
DTGIFVSEIIRGSVAESDGSLLHGDQILSINGEDVRAASQDHAQRLLQECTGAVHLEVAR
FKAGLQYSQRSKSEASDCSTLTSKSGCDSSFCHQRETDNKTRSWKAELRKVTIQKGPCDT
LGISLAGGRSSPHGNVPLFIASMDTNGLAAKTWKLETGDRILSINDVSTEGMTHDHAEAL
LKNATGTISLQVAAAFEGCSSQDPSETHVSSSDPTSSCSQNNFCPRVYKTISLERGLSGL
GFSIVGGFGSPHGDLPIYVKTIFSKGAAIEDGRLKRGDQIIAVNGHCLEGVTHAEAVEIL
KKTKGTVVLTVLS
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atggagatcatggatgctcagtgcgccttagaagctgtggaaagactgcaagccaaactg
agggagcgaggggaggctcccactcaggaaaaactctctgtgctgaagactgtcctgcag
agccctcttttcctgcacatcctcagcttgcagcaggctcagccaaagcctccggtgaag
gggaaaggcgtttccaaatctgtgtccctgaactgtggcccatgcctggacttacctgtt
ggcctaaaggcactgagccacagcgactcgtacacttgggctgtggagaaccgaaagtct
tttcagaaggatggcagcaactcctccctcggttcacatgaattgtccttctcagatatc
tacccagacaacttttctcacaaggaatctcagtattgcactcctcctcgtatttcccgc
accatgtcgatgggtaggaacctttctgctattgcacatgagaggcgtcacattgagata
atagagctgatcaatgatggaaaaggacttggttttggcatcgtaggaggacgcagcaca
ggtgtcatggtcaagacaatattacctggaggagcagcaggaagggacactcgcctgcgc
agcggagatcagattctgcatattggagatacagacttggcaggcatgagcagtgaacaa
gttgcacaggtgctgcgaaatgctggcagcagggtgaaacttctcattgccagggatgtt
accaaacccaattacctctcctcccctgctctgaatcaggatactttggacgacaagccc
agtgacttgaatgatgactatgagttcagtatccagttcactaaaaatagccggggcctg
ggattttccatctcaagctatgtaggagacctgaactcagtctacagtgccggtgtgatg
gtgaagagtatagtaaagggcagttctgcagatcaagatgggcagatgcgggttggagac
attatcctttctgtggatggtgtgagccttcagggctgcagtgaacagcgagccatggag
gtgctcaggaggactggtcctgttgtcaggctgaggttgctgagaaaggccatctgcctt
cgtcacatcttgcccccagttcctcctctgcagcccctcagacactcccacagcctccat
gaaggcagcccttacaaatcaggcctgaacaagattcaggagacaggaatcagctctctg
cgtgaaatctcccggcgagcggcatatgccagcagacgaccccgacacgatcccagagat
ggtgtgaaactcactccagaggaagaggaaaacctgaggaagaggtggcaggatgccgtt
ggacaccgatttgaagtgactgtctgtcagctagagaggttcagtgaaacaagtggtcta
ggtatcagtctggaggctcgggctggacatcactacctgtgctccatcttaccagagggg
cctgtaggtcaaagtggcaaaatctttactggagacgagataatggaagtaaatggaatc
cccctcattggacagacacacaaagaggtggtcaatgttctgaaagaacttccagtgcaa
gtataccttgtgtgctgtcgcattgtccccccttcagttcatgacagtgatgaagaagca
aacgatgatgtctgtctgagtctcaaagagctgctggctgagttcaatgacaagctggat
cacggctgtgtcataccctgtcctacagctgaggacattacaaagcgtggcgtgcccccc
atgtcacctcctctggccatgtgggagaaagaggctcaaattgttgagctggaaaaaggc
gagtcaggacttggcttcagcatcctggactaccaggatccagaggatgcctccaaaaca
gttctgataatccggtcactggttcctggaggtgtagcagatcaagatggccgcctgcta
cctggtgaccgactaatgtttgttaatgaaactgacttggagggttccagcctggattat
gctgttcatgtcctgaagtctactgaatatgggcttgttcaaattggcgtttctaaacca
ctgccgctggaactgtgtggtggcttgacacccatagcggagcgaagcgcgcggccttcg
accgatgacactgacagccacactcaggtcagcctgctagctgagacagctgaggccaat
ttcaacggcacaacttggaacgccgaggatcacagcttgagccagccgtgttacacggaa
aatcagctgcgttatcgctgctgcacaatggaagatgacagtgggcagcaagctccacct
ctgccccctcgcacaagctttgagaggacaatcactgttgtccggggcaaccgtagcctt
gggatgtcggtgagtgctatcaaggacggcacaggcattctggtccggagcgtggtccag
gggggctctgtttgccaggatggcagactgggggtgggggatgtcatcttggccataaat
ggagaacttgcctcaaatctgagcagcgcccaggccaggtccatgctccgcaggcactct
gtcatagggccagagatgaggataacctatgttccagctcatcaggtggatgagcaccga
acccgtctgtgtttgcctcctctggcatccatctcgacagacagtccatcttcttcgccc
atcctacctacccctgagcctgaatcagtctcagccagatcctcctgtcctccggcttca
tcagcgctcagattgtctgcttcagtcaaatacaaaacaacaacagctccagagccaccc
atagtcagggccactgtttcattcaaagccgttaaagggccagccatagtccccaccatc
accctagcctcagacacaagctggcaggttccaaaatccctccaaaaatctccaaatagc
aaagtggaggatgaagatgtaaaggagagagcagacgaaacaaatgaaggtgtaaaagta
aaaaacccacaggtgaaaataaaggttgatggcaaagaagaggacaatgaagaggtctgc
tcacatgcagcctggtcttgggatcagcctaaaagtgtgcagctgactcgagcaccgagc
caatcgctaggtatcagcattatgggaggcagaggcatgggccgcagactgaacagtgga
gagatgatgaggggtgtcttcatcaagcacatcagccccgacagccctgcagcacttaat
ggcacccttagggttggggacaggatactggaggtgagtggcgtggacctgagagatgcc
agccatgagcaggcagtagaagccatccgcagggcaggtgacactgttcaccttctggtt
cagtccggtctggacagaactcagtctcccaatcccatcaatcatgaaagactatctcct
ataccgctgtctgactcacacaacaacaaggaggcagagactctcagcagtctgttccgt
ctttcccctgcgaaccctttcacccccaccccctttaaggccccatcgccaacatccgat
agaatggatcgcagaagccccgtaaatgtcacaacagcagccgatgcggcagctgaggac
ggagacgacaccggcaggaagaagatgctccagcgctatggcagcctgtcaggaaagctc
cacatgattgagctggagaaggaccctgcagctcacggtttgggaattagactcgcaggc
aacgaggagggctccagggcacgaatgagtgtctatgtggaaggaatagacccgaatggg
cctgctggtttggatgggagaatacatgttggggacgagctactggagataaatggccag
atcttgtatggtcggagtcatcaaaatgccaccaccattatcaacaacgccccgtctaaa
gtcaagatcattctcatccgaaacaaatcgggccaaatgctgaagagaatcaggagagag
gatgaggacacagtggactctaagacggacgctgcagagggtgaatcacatggcattgac
catgtcatcctacaccaggaaggcaggataaaggttggagaccgagtcgtagcagtgggt
gatgaacctatagccggactgtcagtagaaaaggtgtccagtttgattctcaaagatccg
gtcactgtcaagcgctccatcagccaatccaagactatccctttcttatcttctcagtct
ttcccttcatcactttcccatcacccccaccttcctgctgtttcatctgaacctcgtccc
atctctcagtcttcttctacgtccctcggtacagagcagacctctccagaagagtgctct
cattggccagcttcaagtccttcaacctctgacccccggagctgcccagttttacctggg
agggaaactaccatagaaatttgcaaagaaaacttaggcctgggcctcagcatcgtagga
ggatgtgacacccttctgggggcagtaataatccatgaagtgaatgatggcggcgcagca
cagagagatggaaggctgcaggctggagatcaaatattagaggtgaataacatagacctg
cggcaggccacacatgacgaggcgattgcagtcctgcggctcaccacccaacaagttcgg
ctgtgtgtcttcaggcaccaggaggcctaccgggaggaagacctgtgggacatctttagt
ctggaactcacgcctcgtccagaggaaggcctgggattcaccaccatggggaagagcgat
gacacaggcatctttgtgtcagaaatcatcagaggaagcgttgcagaatcagacggcagc
ttgctgcacggcgaccagattctgtcgattaatggggaagatgttcgcgccgcatcacag
gaccatgcacagagacttctacaggagtgcactggagcagtccacctagaggtagctcgt
tttaaagctgggctccagtattcccagaggagtaagagcgaagcctctgactgctccact
ctgaccagcaaaagtggatgtgattcatctttttgccaccagagggagacggacaacaaa
acacggagctggaaagctgagctcagaaaagtaacaatacagaagggtccatgtgacacc
ctgggaatcagtctagccggaggacggagtagtccccatggcaacgtacctcttttcatt
gcttctatggataccaatggactggctgccaaaacatggaaattagagacaggagacagg
atcctcagcatcaacgatgtgtccacggagggaatgactcatgaccacgctgaagccctg
ctcaaaaacgccaccggaaccatcagtctgcaggtggcagctgctttcgaagggtgcagt
tcacaggatccaagtgagactcatgtcagctcatcagatccaaccagcagctgctctcag
aataacttctgtccacgtgtttataagaccatcagtctggagagaggtttgtcaggcctg
ggcttcagcattgtgggggggtttggcagccctcatggagacctgccgatctacgtgaaa
actattttcagcaagggggcagccattgaggacggcaggctgaaacgaggtgatcagatc
attgctgtgaatggacactgcctggaaggtgtgactcatgcagaagctgtggaaatctta
aaaaagaccaaaggaactgtagtcttaactgttctctcctga
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