Xiphophorus hellerii (green swordtail): 116720298
Help
Entry
116720298 CDS
T07363
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04010
MAPK signaling pathway
xhe04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116720298
04020 Calcium signaling pathway
116720298
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xhe04040
]
116720298
Ion channels [BR:
xhe04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
116720298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
TMEM208_SND2
ETRAMP
Motif
Other DBs
NCBI-GeneID:
116720298
NCBI-ProteinID:
XP_032419351
LinkDB
All DBs
Position
5:28204168..28414075
Genome browser
AA seq
2295 aa
AA seq
DB search
MSEEEEGPGVAASASTQSAATAAGTAQAATKGGDGVVSSSPPRGPSPRYPVYPEEKEAEA
EEKGVVQEERLEEEEKELKVVEERDDDSDGGSSDTSVLVVPHPELVPVVFFCLKQTTCPR
SLCIRMVCSPWFERVSMMVILLNCVTLGMYQPCENIDCSSDRCQILQAFDAFIYIFFAME
MVIKMVALGIFGRRCYLGDTWNRLDFFIVMAGMVEYSLDLQNINFTAIRTVRVLRPLKAI
NRVPSMRILVNLLLDTLPMLGNVLLLCFFVFFIFGIIGVQLWAGLLRNRCYPEENFTLTT
GIGLPRPYYMADEDDERPFICSLPVDNGIMSCSDVPARREGGRACCLDKEDVVYRQSIGL
SPEPLTNNSVSVAGLCVNWNQYYTRCHTGSSNPHKGAINFDNIAYAWIVIFQVITLEGWV
EIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQREHQLMQEQRARCS
SSSTLASEPGDCYEELFQLVCHCLRKARRQTVAFFNSLRGKPRGFRGVGRGRRVGDEREK
KANGRRELERRLVSRPGHPCPHRHKQVHASSAEPVALTAASKVDGCPQCAAALELKDGVG
AVCVAGDETEEEAVDKNDNEDKQKQGTKDEDKKTPKSAENRIGCSPKKQCKELWQDTRKK
LWSIVESKYFNRGIMMAILINTISMGIEHHEQPEQLTNVLEICNIVFTSMFSMEMILKLT
AFGSFNYLRNPYNVFDGIIVIISVCEIVGQSDGGLSVLRTFRLLRVLKLVRFMPALRRQL
VVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKFSLKTETGDTVPDRKNFDSLLWAIV
TVFQILTQEDWNAVLYNGMAATSPLAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDAN
RSCSDDDRSSSNYDESEKRDSIKLSDPRICTLTPNGHLELGALSGSRGSYSSEKRSFTVE
SRKSSLMSLGRSSLERRSLSLRHGRSSNYHNWGRPFPPQSGWSRRSSSNSLGRRTYGFSG
APPVGGSLRVRSTRSPYSYHHASEQESLLSHPLHSHHSHHPLPPPMFLSRHFGGRRDRRA
LSLELPELLRTGGQAPAPPPVQLPDHGRKSGSGAAGSLTGGSGAGSGLGADHRDCNGKAS
GHHNHLMTDVFPQVNARKDRADLDEETDYSLCFRIQKMMEVYKPDWCETREDWSVYMFSP
QNKFRLLCQSIIAHKLFDYVVLVFIFLNCITVALERPKILQGSLERLFLTLSNYIFTAIF
VAEMTVKVVSMGLYLGETAYLRSSWNILDGFLVFVSLIDIVVSMAGGAKILGVLRVLRLL
RTLRPLRVISRAPGLKLVVETLITSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYYCVG
SDVKNITNKTDCIRASYRWVHHKYNFDNLGQALMSLFVLASKDGWVNIMYHGLDAVGIDR
QPLTNNNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEVEEARRREEKRQRRM
EKKRRKAQKLPYYSSYGRTRLAIHALCTSHYLDLVITFIICINVITMSLEHYSQPQSLET
ALKYCNYFFTSTFVIEASLKLVAFGFRRFFKDRWNQLDLAIVLLSVMGITLEEIEINASL
PINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALG
VELFGELVCNADYPCEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRECPQHLPG
TDYGCHAGLQFISPLYFVSFVLTAQFVLINVVVAVLMKHLDDSNKEAQEDAEMDAEIELE
LAQGGLCCMMGNIGAIAGATGGAAAAAGLGGAVGSLGGGVTAPLQDGAGGGGGGGSAHDG
HAHPRCRLYSPSQESQWLDSVSLLIKDSLEGDMIDNLSGSVFHHYCSSPVCKDCKSHPQE
VRLAEVEQASLMSEQLSDKSSSPALPDDLSLDEHSSYQLLVRDSQRGSSDSHSSEELLMQ
EGRRRLYPSSSGSEEFLHPPLKPPSVEQQTSAHEKEGDENTHSGAADVASPVFQLPADFF
HPAAAAHSDGQGDSMRPRDMDLSRLASPASWASLHSPGANSRPLSSQHPSHSDSSLATGS
SDGSLQAAPDEGLGFGVCPPRHLDLPVPVLRPVAAIALRPKEQPTADRGQSPQIGQSSAT
RRKQRSHSSSGPGCPQQDCVDPSDEEAGTGTGRDGCHQALCGEHFSETLNSLSLTSLLAP
GSLAPTAMKKCNSTGSIVGSSPSARGKDGRHTCAVDPPGFSSSPWIEGRGEASLEDSNAM
KSSARHFNTKDRKKR
NT seq
6888 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggaggaggagggccctggtgttgcagcatcagcatccacgcagtcagcagcg
acagccgccgggaccgcacaagccgcaaccaaaggcggagatggcgtcgtttcgtcctcg
cccccccgcgggccctctcctcgctaccccgtctatcccgaggaaaaagaggcagaagcg
gaagagaagggcgtcgttcaggaagagaggctcgaagaagaagaaaaggagctgaaggtg
gtggaggagcgcgacgacgattccgacggcggcagcagcgacaccagtgtgctggtcgtg
ccccatcctgagctggttcctgtggtcttcttctgtctgaagcagacaacctgcccacgc
agtctgtgcatccgcatggtctgcagcccgtggttcgagcgtgtgagcatgatggtcatc
ctgctgaactgtgtgaccctggggatgtaccagccctgcgagaacatcgactgctcctca
gaccgctgccagatattacaggcgtttgatgcgttcatctacatcttctttgccatggag
atggtcataaagatggtcgctctgggaatcttcggccggcgctgctaccttggagacacg
tggaaccggctggatttcttcatcgtcatggcagggatggttgaatattccctggatttg
cagaacatcaacttcacagccatcaggacggtgagggtgctgcggcctctcaaggccatc
aacagggtgccaagcatgcgtatcctggtgaacctgctgctcgacacgctgcccatgctg
ggtaacgtgctcctcctctgcttcttcgtcttcttcatcttcggcatcatcggggtgcag
ctgtgggcggggctgctcaggaaccgctgctacccagaggagaacttcacactgactacg
ggtatcggtctcccccgaccttactacatggccgatgaagatgacgagcggcccttcatc
tgctcgttacccgtcgacaacggcatcatgtcctgctcagatgtgccagcccgccgtgaa
ggaggccgggcctgttgtttggacaaagaggacgttgtctaccgtcagtccattggactg
agtcctgaacctttgaccaataacagcgtcagtgtagctggcctgtgcgtcaactggaac
cagtactacaccagatgtcatactggaagcagcaacccacacaaaggtgccatcaatttt
gataacattgcctatgcctggattgtcatctttcaggtgatcactctggagggctgggtg
gagatcatgtactatgtaatggatgctcactctttctacaactttatctacttcatcctc
ttaataatagtcggttccttcttcatgatcaacctgtgccttgtggtcatcgcaacccag
ttttcagagaccaagcagcgggagcaccagctcatgcaggagcagcgagctcggtgctcg
tcctcttcgacgttggccagcgagccgggagattgctacgaagagctcttccagctggtc
tgccactgccttcgcaaggccaggaggcaaactgttgccttttttaatagtttgcgaggt
aaaccccgtgggtttcggggcgttgggcgaggaagacgagtaggggatgagagggagaag
aaggccaatggaaggcgagaacttgagaggagacttgtgtccaggcctggtcatccgtgc
cctcatcgtcataaacaagtccacgcctcgtcagccgagcctgtagccctgaccgctgcc
tcgaaggtagacggttgtcctcagtgtgctgcagcactggaacttaaagacggagtggga
gctgtctgtgtcgctggcgatgaaacagaggaggaagccgtggacaaaaacgacaatgag
gataaacaaaaacaaggaaccaaagacgaggacaaaaaaaccccgaaaagtgccgagaac
cgtataggatgcagtccaaagaaacaatgcaaagaactttggcaggacacgaggaagaag
ctgtggagcatcgtagagagcaaatactttaaccgaggcatcatgatggccatccttatc
aacaccatcagcatggggattgagcaccatgagcagccggagcagctcaccaacgtgctg
gagatctgcaacatcgttttcaccagcatgttctccatggagatgatcctgaagctcact
gctttcggctccttcaactacttgaggaacccctacaacgtgtttgatggcatcatcgtc
atcataagcgtttgtgagattgtcggccagtcggacggcggcctgtcggtgctcaggacg
ttccggctgctgcgcgtgctgaagctggtcaggtttatgccggcactcaggagacagctg
gttgtcctcatgaagaccatggacaacgtggccaccttctgcatgctgctcatgctcttt
atcttcatctttagtatcctcgggatgcacatcttcggctgtaaattcagtctgaagaca
gaaactggggatacagtcccagacaggaagaactttgactccctgctctgggctatcgtc
accgttttccagattctgacccaggaggattggaacgccgtgttgtacaacggcatggca
gccacctcaccgctcgccgctctttacttcgtggcgctcatgacctttggaaactacgtc
ctcttcaatctgctggtggccattttggtcgaagggtttcaggcggagggtgatgcgaat
cgctcctgttccgacgacgaccgctcgtcctccaactatgatgagagtgagaaacgagac
tccattaagctgtctgatccaaggatttgtactctgacaccaaacggtcacctggagctc
ggggccctgtcgggctccagggggtcctactcctcagagaagcgcagcttcaccgtcgag
tcgaggaagagcagcttgatgagcctcgggcggagcagcctggagagacgctccctttct
ctgcgccatggtcgcagttccaactaccacaactgggggcgaccttttcctccacagtct
ggatggagtcgcaggtccagctccaacagccttggtaggcggacatatggtttcagtggg
gcgccccctgttggcgggagcctgcgcgtgcgcagcacccgctccccctactcctaccac
cacgcttcggagcaggagtcccttctctcgcaccctctccactcgcatcactcccatcat
cctctgccgcccccgatgttcctctccagacatttcggaggaagacgggatcggcgggct
ctttccctggaactcccagaattgctccggactggcgggcaagctccggcaccgccgccc
gttcagctccccgaccacgggagaaagagcgggtctggggcggcgggctcgctcaccgga
ggctcgggagccggcagcggtctgggagcggaccaccgtgactgcaacggcaaggcatcg
ggtcaccacaaccatctgatgaccgatgtcttccctcaagtcaatgcacgcaaggacaga
gcagatctagacgaagaaacagactatagtttgtgcttccgtatccagaagatgatggag
gtttacaaaccagactggtgtgagactagagaggactggtctgtctacatgttctctcct
caaaacaaattcaggcttctctgtcagtccatcattgctcataagctttttgattacgtg
gtcctggtctttatcttcctcaactgcatcacagtggctctggaaaggcctaagatactt
caaggaagcctggaaagactgtttctcaccctttcaaactacatctttacggccatcttt
gtcgcagagatgacggtcaaggttgtgtccatgggcctgtacctgggagagacggcgtat
ctgaggagcagctggaacatcctggacggtttcctggtctttgtgtctctgattgatatt
gtcgtgtcaatggcaggaggcgctaagatcctgggagtcctgcgcgttctccggttgctc
aggacgttacggcctctcagggttatcagcagggctccagggctgaagctggtggtggag
acgctaattacttccctcaaacccatcggaaacattgttctcatctgctgtgcctttttc
atcatctttggcattctcggagttcagctcttcaaaggcaagttttactactgcgtgggt
tcggacgtgaagaacatcacgaataaaacggactgcatccgagcaagttaccgatgggtt
caccacaagtacaactttgacaaccttggacaggctcttatgtcgctgtttgttctagca
tcaaaagacggctgggttaacatcatgtaccacggactggacgcagtggggattgaccgg
cagccgttgaccaacaacaatccgtggatgctgctctacttcatctcgttcctcctgatc
gtcagcttcttcgtcctcaatatgttcgtgggcgtggtggtggagaacttccacaagtgt
cggcagcaccaggaggtggaggaggcgaggcgcagggaggaaaagcgccagcgtcgcatg
gaaaagaagaggagaaaagcccagaaactgccttactattcttcctacggccgtacccgg
ctggccatccatgctctgtgtactagccactacctggacctcgtgatcacctttattata
tgcattaacgtcatcaccatgtccctggagcactacagccagccacagtcgcttgagacc
gccctgaagtattgcaactacttcttcacctccacctttgtcattgaggcgtctctcaag
ctagtggcctttggattccgccgcttctttaaggacaggtggaatcagctggacttggct
atagttctgctgtcggtgatgggcatcactctggaggagatcgagatcaatgcctccctt
cccatcaaccccaccatcatcaggatcatgagggtgctccggatagcgcgagtgctgaaa
ttactgaaaatggcaaccggcatgagggccttgctggacacagtggtccaggctcttcct
caggtgggaaatctaggcttgctcttcatgttgctgtttttcatctacgctgctcttgga
gtggagctttttggcgagctcgtgtgtaacgccgactacccttgtgagggaatgagccgc
cacgccacatttgaaaactttgggatggcctttcttacactcttccaagtatcaacaggt
gacaactggaatggcattatgaaggacactctgagagagtgcccacaacatctccccggc
accgactacggctgccacgccgggctgcagttcatctccccgctgtacttcgtgtcgttc
gtgctcacggctcagttcgtcctgataaacgtggtcgtcgccgtgctcatgaagcacttg
gacgactccaacaaggaggcgcaggaggacgcggagatggacgcggaaattgaactggag
ctggctcaggggggcctctgctgcatgatgggaaacatcggcgccatcgccggggcgaca
ggcggggccgcagccgcggcaggtctggggggtgcggtcgggagtctgggcggcggagta
acggcgccacttcaagacggagcgggaggaggaggaggcggcggctctgctcacgacgga
cacgcccacccgcgatgtcggctctactcgccatctcaagagagccagtggctggacagt
gtgtctctgctgattaaggactcattggaaggggacatgattgacaacctctctgggtcc
gtttttcaccactactgctcttctcccgtctgcaaggactgcaagagtcacccgcaagag
gtccgactggcagaggtggagcaggcgtcactgatgtcagaacagctgtcagacaaatcc
tcctctccagcgttacccgatgacctcagcctggatgaacacagcagctaccagctgctt
gtcagagacagtcagaggggcagcagtgactcccacagctcagaggagttgctcatgcag
gaaggccgcaggagactttacccctctagttcaggaagcgaagagttcctccatccacct
cttaaacctccttctgtggagcagcaaacctcagcacacgaaaaagaaggcgatgagaac
acacacagtggggctgctgatgtggcttcgcccgtgtttcagctccctgcagactttttc
cacccagccgccgcagcgcattcagacggtcaaggggacagcatgaggccgagggacatg
gacctgtcccggctggcgtcccctgcctcctgggcctctctacactctcccggagccaac
agcaggcctctgagctctcagcatccatcgcacagcgactcgtccttggccacgggcagt
tcagatggcagcctgcaggccgcgccggatgaagggctcggctttggcgtgtgcccacct
cgacatctggatctccccgtgcccgtcctccgcccggtcgccgccatcgcgttgcgccct
aaagagcagcccacagcggaccgggggcagtcaccgcagattggacagagttctgccact
cggaggaaacagaggagccacagcagcagcggccccggctgcccccaacaggactgcgtg
gacccttcagatgaagaggcgggcacagggactggaagggacggctgccaccaggccctc
tgcggcgaacacttctcagaaacgctcaacagtctgtccctcacgtcgctgctcgccccg
ggctctctggcacccacggcgatgaagaaatgcaacagcacgggatcgatagtcggctcg
agcccgtccgcccggggtaaagacggccgacacacgtgcgccgtagatccccccggattc
tcgtccagtccttggatcgaggggaggggagaagcgtcgctggaggacagtaacgcgatg
aagagcagcgctcggcatttcaacacaaaagacaggaaaaaaagatga
DBGET
integrated database retrieval system
