Xiphophorus hellerii (green swordtail): 116720314
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Entry
116720314 CDS
T07363
Name
(RefSeq) transcription activator BRG1-like isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116720314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116720314
03036 Chromosome and associated proteins [BR:
xhe03036
]
116720314
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116720314
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
116720314
Chromatin remodeling factors
BAF complex
116720314
PBAF complex
116720314
GBAF(ncBAF) complex
116720314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
116720314
NCBI-ProteinID:
XP_032419386
LinkDB
All DBs
Position
5:10674663..10690599
Genome browser
AA seq
1666 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPNAMLGPSPGPSPGSSHSMMGPSPGPPSSGHSQPVPS
GYGPENMHPLHKPMEGMHEKSLCDDSRFSQMKGLSMRQGGHSGMGPPPSPLDQHSQGYHS
PLGGSDHSSPVASNGPPSGPLMPSTSSSSSSAGSGSASASLDGPNVDQHSLGPNNRSGPP
GNSGPGPSPGPSLGSSVPSLGSGLDGSGPGGPGGPTPFNQNQLHQLRAQIMAYKMLARGQ
PLPDHLQMAVQGKRPMPGMQQQQPMSSLVSGTSAGPGGGPTGPGSGPGPMGSSYSRPHGM
MGPNMPPPGPSGTPVGMQGPNPNGPSKSWPEGPMVNAAAPSNAPQKLIPPQPTGRPSPAP
PSVPPAASPVMPPQTQSPGQPAQPPPMMPYHAKQNRITPIQKPCGLDPVEILQEREYRLQ
ARIAHRIAELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRDTALETALD
AKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTG
KMQKLTKAVSTYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ
QTDEYVANLTELVRAHKAAQALKEKKKKKKKKKKLENAEGQTPALGPDGEPLDETSQMSD
LPVKVIHVDSGNILTGVDAPKAGQLETWLEMNPGYEVAPRSDSEDSEEEEEEEEEEEEPQ
PSSAPVEEKKKITDPDSEDVSEVDVRHIIENAKQDVDDEYSGAAFARGLQSYYSVAHAVT
EKVDKQSTLLINGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH
KRLNGPYLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTT
YEYIIKDKQVLAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLP
ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR
LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTI
MQLRKICNHPYMFQQIEESFSEHLGFSGGIVQGPDLYRASGKFEVLDRILPKLRATNHKV
LLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAG
GLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK
YKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEVWGQELVNEEDEVPDDETVNQ
MIARSEEEFEQFMRMDLDRRREEARNPRRKPRLMEEDELPTWIMKDDAEVERLTCEEEEE
KMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGTLEEMEEEVRHKKTTRKRKRDRDLDLPGP
SSSSGSRGRGDRDDDGKRQRKRGRPPAEKLSPNPPGLTKKMRKIVDAVIKYKDSTSGRQL
SEVFIQLPSRKELPEYYELIRKPVDFRKIKERIRSHRYRSLGDLERDVMLLFQNAQTFNL
EGSLIYEDSIVLQSVFTSLRQKIEKEEESEGEESDEEEEEQEDGSESESRSVKVKIRLSR
KDKGGDRGKGRSRRTGRTRAKPVVSDDDSEDEQEEERSASGTDEEA
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacacctgatcctcccatggggggtaccccccgtccgggtccatcacccggtcct
ggcccctcccccaatgctatgctgggccccagcccgggtccttcccctggctcctctcac
agcatgatggggcccagccccggtcctccttcctctggacactcccagccagtaccctct
ggatatggccctgaaaatatgcaccctttgcacaaacccatggagggcatgcatgagaag
agcttgtgtgatgacagtcgcttcagtcagatgaagggactttcgatgagacagggcggg
cacagtggtatgggccctccacccagccctctggaccaacactcacaaggctaccactct
ccacttggtggctcggaccactccagccctgttgcttcaaatggccccccatccggtcct
cttatgccatcaacttcctcctcatcatcttctgcaggttctggttctgcttcagcctct
cttgatggccccaatgtagatcaacattccttggggcctaataaccggtctggacctccg
gggaattctggacctggccctagccctgggcctagccttggctccagcgttcccagcctc
ggttctggccttgatggtagtggccctggaggacctggtgggccgactccctttaaccaa
aaccagcttcaccaactcagagcccagatcatggcgtataagatgctcgcccgcggacag
cccctgccggatcatctccaaatggctgttcaaggaaagaggccgatgccagggatgcag
cagcagcagcccatgtccagtctggtttctggaactagtgcaggaccaggaggtggtcca
acaggacccggatcagggcctggacctatgggctcaagctacagtcggcctcatggcatg
atgggtcccaacatgcctccccctggtccttcagggaccccagttggcatgcaaggaccg
aatcccaacggaccctccaagtcatggcctgaaggccccatggtgaatgcagcggccccc
tccaacgcaccccaaaaattgatccctcctcagcccacaggcaggccttctcctgctccc
ccatcagttcccccggctgcttcccctgtaatgcccccacagacccagtcccctggtcag
cctgctcagcctcctcccatgatgccttaccacgccaagcagaaccgcattacccccatc
cagaaaccctgcggtctcgaccctgtagagattctgcaagagagggagtacaggttgcag
gctcgtattgctcatcgcattgctgaattggagaacctgcctggttctttggctggtgat
ctacgtaccaaagctacaatagagctcaaagctcttcgtttgctgaacttccagagacag
ctgcgtcaagaagtagtggtgtgcatgcgacgtgacacagctctcgagactgctctggat
gccaaagcctacaagcggagcaagcgccagtctctccgggaggctcgcatcacagagaaa
ctggagaaacagcaaaagattgagcaagagcgcaaacgcagacaaaaacatcaggagtac
ctcaacagcattctccagcatgccaaagacttcaaggagtatcaccgctcagtcacggga
aagatgcagaagctgaccaaagccgtgtccacctaccacgccaacactgagcgtgagcag
aagaaggagaatgagcgcattgagaaagaacggatgaggaggcttatggctgaagatgaa
gagggctaccgtaaactgattgaccagaagaaggataagcgcctggcctatttgctgcag
caaactgacgagtatgtcgctaacctcactgagctggtacgagcccacaaagctgcacag
gccctcaaggagaagaaaaagaagaaaaagaaaaagaagaagttggagaatgcagagggt
caaactcctgctcttggaccggatggagagcccctggatgaaacgagccagatgagtgac
ctgcctgtaaaggtcatccatgtggacagcggcaatatcttgacgggcgtggatgctccg
aaggctggacagttggaaacatggctggagatgaaccctggttatgaggtcgctccccgc
tcagacagtgaagacagtgaggaggaggaagaagaagaggaagaagaagaggagcctcaa
ccttcatcagctccagtggaagaaaagaagaagattacggacccagacagcgaagacgtg
tcagaagtggatgtccgacatatcattgaaaacgctaaacaggatgtggacgacgagtac
agtggtgcagcgtttgctcgagggctccagtcgtattattctgtggcccatgccgtcaca
gagaaggtggacaaacagtctactttactgataaacggacagcttaaacaatatcagatt
aaaggtctggaatggttagtttctctttacaataataatctgaatgggatcctggctgat
gagatgggtttgggaaaaaccatccagacgattgctcttatcacctacctcatggagcac
aagcggctcaacggaccctacctcattattgtccccctctcaactttgtccaactgggtg
tatgagtttgacaagtgggcaccatcggtcgttaaagtgtcctacaaagggtctcctgct
gctagaagagctttcgtcccccagctgcgaagtggcaagtttaatgttttactcaccact
tacgagtacatcatcaaggacaaacaagtactggccaagattcgatggaagtacatgatt
gtggatgaaggccaccgcatgaagaaccaccactgtaagctgacccaggttctaaacacc
cactacctcgctccgaggagagtgttgctgaccgggacgccattgcagaacaaactacct
gaactgtgggcgctcctcaacttcctgctgcccaccattttcaagagctgcagcacattc
gagcagtggttcaacgccccgtttgcaatgactggagagaaggtggatcttaatgaagag
gagacaatcttgattattcgtcgcctgcacaaagtgctccgccccttcctgttgagaagg
ttaaagaaagaggtggaggctcagcttccagaaaaggtggaatatgtcatcaagtgtgac
atgtcggctcttcagagggtcctgtaccggcacatgcaggccaaaggggtcctgctcact
gacggatccgagaaagacaagaagggtaaaggaggcacaaaaactctgatgaacaccatc
atgcagctgaggaaaatctgtaatcatccatatatgttccagcaaattgaggaatctttc
tctgagcatttaggattctctggtggaatagtccaaggtcctgacctttatcgagcttca
ggaaagtttgaggtgctggatcgcatcctgccaaagctgagggccacaaaccacaaagtg
ctgctcttctgccagatgaccacactcatgaccatcatggaggattacttcgcctaccgc
aacttcaagtatctgcgtctggacggcacaacaaaggctgaagaccgaggaatgctgctg
aagacatttaatgaaccggggtcagagtactttatttttctgctgagcacaagagccggc
ggtctcggcctcaacctgcagtctgcagacactgtgattatttttgactcagattggaac
ccccatcaggacttacaggctcaagacagagcccatcgcatcggccagcagaacgaggtg
cgagtgctgcgcctctgcaccgtcaacagtgtggaagagaaaattctggcagctgccaag
tataaattgaatgtggatcagaaagtcatccaggccggcatgttcgatcagaaatcctcc
agccacgagcgccgggccttcctgcaggccatcctggagcacgaggagcaagacgaggtc
tggggtcaagagcttgtgaatgaggaggacgaggtgccggacgatgagaccgtcaaccaa
atgatcgccaggagcgaagaggagtttgagcagttcatgcgcatggacctggacaggcgt
cgcgaggaggctcgtaatcctcggcgaaaacctcgtctgatggaagaggacgagcttccc
acctggatcatgaaggacgatgctgaagttgagcgtctgacctgcgaagaggaggaggaa
aaaatgtttgggcgaggttctcgacagcgcaaggaggtggactacagcgattcactgaca
gagaaacagtggctcaaggcaattgaggaaggcacacttgaagagatggaggaagaagtg
cgtcacaaaaagacaacccgaaagaggaagagggaccgtgatctggatctcccaggaccc
tcatcttcctctgggagccggggacgcggcgacagagatgatgatgggaagagacaacgg
aagaggggaagaccgccagctgagaaactctctcccaaccctccgggcctcacaaagaaa
atgaggaaaatagtggatgctgtcatcaaatataaagacagcaccagtgggcgtcagctc
agcgaggttttcatccagctgccgtctcgaaaggaactgcccgagtactacgagctgatc
cgcaagccagtggacttcaggaagatcaaggagaggattcgaagccaccgctaccgcagt
ctgggtgacctggagagagacgtcatgctgctcttccaaaacgctcagaccttcaacctg
gagggttccctgatatacgaagactccatcgtgctgcagtcagtgttcaccagcttgagg
cagaagatcgagaaggaggaggaaagcgagggagaggagagcgatgaggaggaggaagag
caggaagacggatcggagtcagaatctcgctcagtcaaagtgaaaatccgcctgagtcga
aaggataaaggtggagatcgaggaaaggggcgcagcaggcgaacaggacgcacccgggcc
aaaccggtcgtcagtgatgacgactccgaggatgaacaggaggaggagcgctcagccagc
ggcactgatgaagaggcttga
DBGET
integrated database retrieval system
