Xiphophorus hellerii (green swordtail): 116720366
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Entry
116720366 CDS
T07363
Symbol
pds5a
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog A isoform X1
KO
K11267
sister chromatid cohesion protein PDS5
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
116720366 (pds5a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xhe03036
]
116720366 (pds5a)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116720366 (pds5a)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
116720366 (pds5a)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
116720366 (pds5a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
EnP1_C
Cnd1
DUF7946
PI-TkoII_IV
TPR_IPO5
DUF4844
Motif
Other DBs
NCBI-GeneID:
116720366
NCBI-ProteinID:
XP_032419487
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All DBs
Position
5:complement(13646505..13670653)
Genome browser
AA seq
1287 aa
AA seq
DB search
MEFPQQQKPAGDGKIFYPPGVKEITDKISNDEVVKRLKMVVKTYMDMDQDSEEEKQQYLG
LALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLE
DTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMM
DLMSSIIMEGDGVTQELLDTILINLIPAHKNLNKQAYDLAKTLLKRTVQTIEACIANFFN
QVLVMGKSSVSDLSEHVFDLIQELFAIDPMLLTSVMPQLEFKLKSNDGEERLAVVRLLAK
LFGAKDSELASQNRPLWQCFLGRFNDIHVPVRLECVKFASHCLMNHPDLAKDLTEYLKVR
SHDPEEAIRHDVIVTIINAGKKDLNLVNDQLLGFVRERTLDKRWRVRKEAMMGLAQLYKK
YCLHHEAGKESAQKISWIKDKLLHIYYQNSIDDKLLVEKIFAQYMVPHSLDTEEKMKCLY
YLYSCLDTNAVKALNEMWKCQNMLRSLVKELLDLHKLPVSEANNTAMLGKLMSIAKNLPD
AGKAQDFMKKFNQVLSEDEKLRIQLEVLISPTCSCKQAEICVREITRKLTFPKQPTNPFL
EMVKFLLERIAPVHIDSEAISALVKLLNKSIEGTADDEEEGVTPDTAIRSGLELLKVLSF
THPTAFHSAETYESLLQCLKMEDDKVAEAAIQIFRNTGQKIETELQQIRSTLIPILHQKA
KRGTPHQAKQAVHCIHAIFNNKEVQLAQIFEPLSRSLNADVPEQLITPLVSLGHISMLAP
DQFASPMKSIVANFIVKDLLMNDRSVGNKNGKLWSADEEVSPEVLAKVQAIKLLVRWLLG
MKNNQSKSANSTLRLLSAMLVSEGDLTEQKKISKSDMSRLRLAAGSAIMKLAQEPCYHEI
ITPEQFQLCGLVINDECYQVRQIFAQKLHLALVKLLLPLEYLAVFALCAKDPVKERRAHA
RQCLLKNISVRREYIKQNPLAQEKLVSLLPEYVVPFMIHLLAHDPDFTKPHEYEQLKDIK
ECLWFMLEVLMTKNENNSHAFLRKMVENIKQTKDAQCPEDAKANEKLYIVCDVALFVIAN
KSTACHLDCQKEPVLSSKFFLVQDKQEFKNDKEYLTGEMRQMLLTGKPKPAPVLATVNKT
LTVPGRRIIQKTTTASDTTSNTSTNSSPLVSANNKNSTDSSESRAQENNENPVIKKEETK
DEPSQKLVTDAGIEASPVRRRGRPTKAAAAAAAAALKEAGAIPAGGGGGKGRKRASDTTT
DSINVKMSKQSQQQSDEGTKRQIDLQR
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atggagttcccgcaacagcagaagcctgcgggggacggaaagatcttctatcctcctgga
gtgaaggagatcacggacaaaataagcaacgatgaggtggtcaaacggttgaagatggtg
gtaaagacctacatggacatggatcaagactctgaagaggagaagcagcagtatctgggt
ctggcgctccaccttgcctctgagttcttcttaaggaaccctaataaagacgttcggctg
ctggtggcctgctgtctggctgatatcttcaggatatacgctcctgaagctccctacacc
tcccacgacaagctgaaggacatttttctgttcatcaccagacagctaaaaggactagaa
gacaccaagagccctcagttcaaccgatacttttacctgctggagaatcttgcgtgggta
aaatcatacaatatctgctttgaactggaggactgcaacgagattttcatccagctcttc
aaaacgctcttctccgttataaacaacagccacaaccagaaggtgcagatgcacatgatg
gatctgatgagttctatcatcatggagggagacggagtcacacaggagctgctggacaca
atcctaataaatctcatacctgcacacaagaatctgaacaagcaagcgtacgacctcgcc
aagactctcctgaagagaacggtccaaaccattgaggcgtgcattgcaaacttcttcaat
caggttttagtgatgggaaagtcctcggtcagtgacctatcagagcacgtcttcgacctc
atccaggagctgtttgccatcgaccccatgctgctgacctccgtcatgcctcagctggag
ttcaagctaaagagcaacgacggagaggagcgactggctgttgtacgtttgctagcgaag
ttatttggagccaaagactcagagctagcatcacagaacagaccgctttggcagtgcttc
ttaggacggttcaacgacatccacgtaccggtcagattagagtgtgtaaaattcgcaagc
cactgccttatgaaccatcccgacctggcgaaagacctcacagaatatttgaaagtgcgt
tctcacgacccagaggaagccatcagacatgatgtcatcgtcaccatcatcaatgctgga
aagaaagacctgaacttggtcaatgaccagctgttgggcttcgtgcgggaaaggacgctg
gacaagaggtggcgtgtgcgtaaagaggccatgatgggcctggctcagctttataagaaa
tactgtctgcatcacgaggccggaaaggagtcggcccagaagatcagctggatcaaagac
aaactgttgcacatctactatcagaacagcattgatgacaagttgttggtggagaagatt
tttgcccagtacatggtgcctcacagtcttgacacagaggagaagatgaaatgcctctac
tacctttattcctgtctggacactaacgctgtaaaggctctaaacgaaatgtggaagtgt
cagaatatgctcagaagtctcgtaaaagagctgctcgaccttcacaagcttccagtgtcg
gaggccaataacaccgcgatgctcgggaagctcatgagtatcgcaaagaatctgccggat
gctggaaaggctcaggacttcatgaagaaatttaatcaggttctgagtgaggatgagaag
ctcagaatccagttggaggtgctcatcagtccaacatgctcctgcaagcaggcggagatc
tgtgtgagggagatcactcggaagctgacgttccccaaacagccgaccaatccgttccta
gagatggtcaagttcctgctggagcggatcgccccggttcacatcgactctgaagccatc
agtgctttggtaaagctgctaaataagtccattgaggggacagctgatgatgaggaggaa
ggcgtcacccctgacacagcgatccgctctggtcttgagctgcttaaggtcctgtcattc
acacaccccacagcattccattcagccgagacctacgagtctctgctccagtgtttaaag
atggaggacgacaaagtggcagaagcagccattcagattttccgtaacactggccagaag
atcgagacggagttgcagcagataagatcaactctgattcccatcctgcatcagaaagcc
aagcggggcacgcctcaccaggccaagcaggccgtccactgcattcatgccatcttcaac
aacaaggaagtgcaactggcccagatttttgagcctttgtctcgcagtctcaacgcagac
gttcccgagcagctcatcactccgcttgtgtctctgggtcatatatccatgctggctcca
gatcagttcgcctcaccaatgaaatccatcgtggctaacttcatcgtcaaggatttgctg
atgaacgacaggtcggtagggaacaagaacgggaagctgtggtccgcagatgaggaagtc
tcacctgaagttttagcaaaggttcaggccatcaagctcctggtacgctggttactagga
atgaagaacaaccaatccaaatcggccaactccaccctccggctgctgtcggccatgttg
gttagtgagggcgacctcacggagcagaagaagatcagtaaatcggacatgtcccgcctg
aggctggctgccggctcggccatcatgaagttggctcaagagccatgttaccatgaaatc
atcacacctgagcagtttcagctctgtggccttgtcatcaatgatgagtgctaccaggtc
cgtcagatctttgctcagaagttgcacttagctctcgtcaaactgctgctgcccttggag
tacctggccgttttcgctctgtgtgccaaggacccggtgaaggagcgccgtgcccacgcc
cgacagtgcctgctcaaaaacatctccgtccgcagggaatacatcaaacagaaccccctc
gctcaggaaaaactggtctctcttcttcctgagtacgtggttccatttatgatccacctg
ttggcccacgaccctgatttcacaaaaccacatgaatatgaacaactcaaagacatcaaa
gagtgtctgtggttcatgttggaagtcctgatgaccaagaatgagaacaacagtcacgca
tttcttaggaagatggttgagaacatcaaacaaacgaaagacgcccagtgtcccgaagat
gcaaaggccaatgagaagctttatattgtgtgcgatgtggctctcttcgtcatcgccaac
aagagcaccgcttgtcacctggactgtcagaaagagcctgtcctttcctcaaagttcttc
ctcgtacaagacaagcaggagtttaaaaacgacaaggagtacctgacaggagagatgaga
caaatgctgctaactggaaagcccaaaccagctccagttttggcgactgtcaacaaaact
ctgaccgttccgggtcggaggatcatccagaagaccactacagcttcagacacgaccagt
aacaccagcaccaactcgtctccactggtctcagctaacaacaaaaacagcaccgactcg
tcagaaagtcgagcacaggagaacaacgagaacccggtcatcaagaaagaagagacgaag
gacgagccgagtcagaagctagtgaccgacgctgggatagaggcgtcacctgtgagacgg
cgcggccgtcctaccaaagccgcagcagccgctgctgcagcggcgctgaaggaagccgga
gcaataccagcaggaggcggaggaggcaaaggcaggaagagggcgtccgacaccaccaca
gactccatcaacgtcaaaatgtcaaagcagtcacagcagcagagtgacgaggggacaaag
agacagatcgacttgcagaggtaa
DBGET
integrated database retrieval system
