Xiphophorus hellerii (green swordtail): 116720406
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Entry
116720406 CDS
T07363
Name
(RefSeq) uncharacterized protein LOC116720406
KO
K17386
platelet-derived growth factor subunit B
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04010
MAPK signaling pathway
xhe04020
Calcium signaling pathway
xhe04510
Focal adhesion
xhe04540
Gap junction
xhe04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116720406
04020 Calcium signaling pathway
116720406
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116720406
04540 Gap junction
116720406
09142 Cell motility
04810 Regulation of actin cytoskeleton
116720406
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
xhe04052
]
116720406
00536 Glycosaminoglycan binding proteins [BR:
xhe00536
]
116720406
Cytokines and neuropeptides [BR:
xhe04052
]
Cytokines
Growth factors (RTK binding)
116720406
Glycosaminoglycan binding proteins [BR:
xhe00536
]
Heparan sulfate / Heparin
Growth factors/receptors
116720406
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PDGF
PDGF_N
Motif
Other DBs
NCBI-GeneID:
116720406
NCBI-ProteinID:
XP_032419550
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Position
5:complement(27615062..27637387)
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AA seq
560 aa
AA seq
DB search
MKSWVLLPLLLAALLSARLRLGNAEGDPLPQSLIDLVWDSPISSVEELMLLLQEESSTIE
DKEDEHDSPLSPVHGRYIRSLEVQKAQKADCKVRTEVMEITRSMVDRSNGNFLVFPLCVE
VQRCSGCCNSRHMHCAPVVNATRNLEVKKFVFKNEKRFIETAIIQVVDHVSCLLQVIPPS
TSSSSSSTVFDSQPNPLPAPPQRYPTSSLRLFPSHSSHPLPPKTPTSKADLHRHDDLKHN
QHHQLPHKQDPLARQWQQGSYTQLVRWTQPRAHQAPTYAETRLTTAGFLGSVGTWPSEAR
AEHSVLESPQQVGHESGFDGSREETSGEARRPDNEQRQQELLKHQQRQEHHHHHHHQQQH
HPHLSQQYNPRGDEDQEMRTQYLLHAPQSDSASPPVSMTPAPTTGQNPTSFTTVIQKDSV
TSQTYGEVTRHKQVESKGDGPKDGTEREESGSAVSGDSGRVEAANQEKENDSKLSGGADH
LTEKERRKKILEMVQSEPEKDPHLHPHQRPKPTTFKSALSTVVPASTAARQVPFRPASPR
RRKRKHRKRISKAAMRAMIM
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcctgggtcctgctaccgctgctgctggctgcgctgttatcggcccgtctgcgg
ctcgggaacgctgagggcgatccactccctcagtcactgattgacctggtgtgggactct
cccatctcctcagtggaggagctgatgctgctgctgcaggaggagtccagcacaatagaa
gataaagaggacgagcatgacagtcctctaagccctgtccacggtcgatacattagaagt
cttgaagttcagaaagcccagaaggcggactgtaaagtcagaacagaggtgatggagata
acgagatccatggtggatcgtagcaacggcaacttcctggtgttccctctgtgtgtggag
gtgcagcgatgttcaggctgctgcaactccagacacatgcattgtgcccccgtcgttaac
gccacccgaaacctggaggtaaaaaagtttgtgttcaagaacgagaaacgtttcattgaa
accgccatcatccaagtagtagatcacgtgagctgtctgctgcaggtgatccctccttcc
acatcgtcgtcttcttcatcgactgtcttcgactctcaaccaaaccctcttccagctccc
ccgcaaagataccctacatcctccctacgtcttttcccatcccacagctcccacccgctt
ccaccaaagactcccacctccaaggcggacctccaccgccacgacgacctcaagcacaac
cagcaccaccagcttccgcacaagcaagatccgttggcgaggcagtggcagcagggcagc
tacactcagctggtgcgctggacgcagccccgagcgcatcaagcccccacatacgcggag
actcgactcacgacggccgggtttctcggctcagtcgggacctggccgtctgaggcgagg
gcagagcacagcgttctggaaagtccgcagcaagtcggacacgagagcggcttcgacggg
agccgcgaggagaccagcggggaggcgcgccgtcccgacaacgaacagcgacaacaagaa
ctgttaaagcaccagcagaggcaggagcatcatcatcatcatcatcatcaacaacaacat
catcctcacctctcgcaacaatacaaccccagaggagatgaggaccaggagatgaggacg
cagtatctgcttcacgctccccagtcggacagcgcttccccgcccgtcagcatgaccccg
gcgcccacgacgggacaaaatcccacttctttcacaactgtaattcaaaaagactcggtg
acgagccaaacgtatggagaggtcactcgtcacaaacaggtggagagcaaaggagacggt
ccaaaagacgggaccgagagggaagaaagcgggtccgcagttagcggtgactcgggtcga
gtggaggcagccaatcaagagaaggaaaatgactctaaattaagtgggggggcagaccat
ttaacagagaaggagagacgaaagaagatactggagatggtacagagtgagccggaaaaa
gaccctcatctgcatcctcaccaaagaccaaaaccaacaacatttaaatcagcgttgtcc
actgtggtacccgcgtcgacggcagctcgtcaggtaccgttccgacccgcttctcctcgc
cgcagaaaaagaaaacaccgcaaacgtatcagcaaagctgctatgagggctatgatcatg
tag
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