Xiphophorus hellerii (green swordtail): 116720412 Help Entry 116720412         CDS       T07363                                  Symbol dchs2 Name (RefSeq) protocadherin-23   KO K16507   protocadherin-16/23 Organism xhe  Xiphophorus hellerii (green swordtail) Brite KEGG Orthology (KO) [BR:xhe00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:xhe04515]     116720412 (dchs2) Cell adhesion molecules [BR:xhe04515]  Cadherins   Cadherin related    116720412 (dchs2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin Cadherin_CELSR2_9th Cadherin_2 RET_CLD1 Cadherin_4 Fibulin_C PepSY CADH_Y-type_LIR DUF4529 Motif Other DBs NCBI-GeneID:  116720412 NCBI-ProteinID:  XP_032419555 LinkDB All DBs Position 5:31535297..31566121 Genome browser AA seq 3270 aa AA seqDB search MGGRNAPVALVRVFLLALFSAQSLGRVFNLTLSVKEGLPAKTIVGDLGAVLSAPSTGFFI SESRDSYVFRDLEIDADTGIISTVAGLDRESRDRYEFVAATLTGEMIRVRIKVEDVNDHS PVFPSKEVELGISELSPPGSRFPLEGAADRDEEEFSTRGYRIRESEMEELFHLDFRIGSE TQHSLDLVLNSRVDRETHDFYTLTIEAFDGGIPARTGTVQVDIRILDENDNPPVFNQSEY HSSVREDAPIGSIVSQVLASDSDLGDNSRITYEINRRQSDPNHVFSINETTGFIYLNKPL DFEIQPFHELIVRARDDGAQPEYSSTFVGVKVLNINDNSPTISVLFLSETGEAVVSEAAA IGEYVARISVSDPDPEEHGITVSLAGGDGKFTLKQTDDFLYALCVNSELDREEKDLYALK VQASDSGSPPLSSETLLLLKVSDANDCQPVFEQDVYTVSIAEDAPEGSSLVRTRARDADE GVNSNIRYSILKSHQDSLVAIDPTSGLVTTATGLDRETQMEVWFLVLAEDGGEPSLSSTA TVTVLVEDVNDNEPVFQQQLYNVSIPEHMDAGSCFLQVVATDADSPEFGALLYSLSDGFD SQESHPVFQINPHTGELCVSQDIDRDDGMSVHDILIKAEDPGGLSAQSYVHIEIQDLNDN PPVFSPEEYIVSVSSHAPPGTEVVNVIATDQDSGRFGQITYEIHPGDLSSLFTLDRHTGM LFLNSSLTHLGAASMKLLITAQDGDGLSSARPAEVTINVVQSGQAPAVFQRSRYAFTVPE DAPLGTSVGTVEASNLSDATEPVSYRISSGNVYSWFSVHPKSGVINTIKPLDHESQPYAL LFLQSYTDTSPIYSTTQVNITITDVNDNAPVFPKRRDTITVSRSTRPGTVLFIAHAHDHD SGANGVVQYRMKSSRNEVFAIDSNLGTVRLNKSLQVSQQQRYNLEILAKDEGKPSLSSTL TLSVNIDHTAADDSLAFETLVYQVEIGEGYRKDSRVIQVRAHRTRGSHTSNSGLTYSLEA EAGFPPPPFRIHSKSGWLYLSSNLDFETESRYRFQVLSTSGEASLANVTATAMVTVLVLD VNDNPPVFSSDVYYFTVSEGSSPQGLVGTVKAKDKDSGKNSQLSYILLSDGKYFRINAKT GEIINWVALDREQHSQHSLTVMVTDQGHPRLNATANVHVLVTDINDNTPQFNHLPSSKEL NVPIWAGVPAGFLVTNMFAKDLDAGENGTVTHSLVTVGSEENGLRHFEIDSKNGDIRTTQ LFSQRTEPSYTLKITARDGGAPSLEDTAVVHIQVYGLEDQYGSSDHQAVRHFSVREDAEP ATVIGSVSVSDKGRFQYSIAEGDGSIFFGIDGTSGDIYVNQLLDYESAKQYFLVARVEDV GASVGLNISALVSVTVEDVNDHAPWFPDKLLMFGLREDAAVGSLAFAFHARDADGTFANS ALRYTLTFDPEVSGSPPHFPFHMNSHTGAMTVAAPLDRESTPTFVFAVTATDQAERTDER KQTSVTVRLLLLDVNDNRPVFVSAQSVQLMEDTEVGSLLHHFVAIDGDQGENGLISYSII NGNRKGFFTLEEKTGLLFLSAPLDYETQRVHRLTVRAVDQGVPSLSSTQTLTVEVGDVND QPPIFSQTTYVTSVVENKGPGEPLLRVSASDMDSEDNAVVWYSLLPGPGYELFSINPYTG LITTTTHLDREQEQHFTLRVQARDNGFRPLSGTATVLCSILDDNDNPPEFMQPLFQISLP ENLSPGVIHTALASDPDLGENGTIHYSVLGEDYRGRFTINSETGAISTMQVLDREEIQNY TLTLQAQDSGPAPLSSTTQLLLFLLDQNDNAPSFSPESYHTSVSEGLPSGAEVLQLTAFD PDEGPNGEVTYTLTDDNSHGAFSMDPFTGVVRTTRSLDRESRALYTLKAVATDGSAQGPL TSVASLTIQVDDVNDNVPVCDQNPLHAWVSMRTQPNQIVTTVVATDADQGENGTVQFTFS FAESLFDINSASGEISLRRRVRAGFSGRKLEVLVSDRGRPPLTATCLVLVHLKGEHDELQ FTNKVYNATVKENSRAGTWITKVEASDDTNSRQRITYTIFSGNENTAFSINRYTGEIRVQ KENSLDFEASPQIQLVVLADSGLHTAHCRVSVTLLDVNDNAPLFELSNYRTAVWEGQVRN TYVMQVFASDADSGENGQIEYSILSGNINEAFILDSVRGILATNVLLDREITPSYRLILQ AKDKGKPPLSSTATVRVQVVDVNDNSPAIPPMELVYIYENLPAGYVVTQVTANDVDLGST ISYSFSNSSITSDPFAIDRYTGVITLTRPLDYEAETEFTLRVSASDSLHQTSGQVTVQVL DANDNSPVFTQVSYQVEVSELVSADTLVVNVAATDKDSGLNGKISYRLLSSPLHAFYIQK DNGSIFTNKPLKTITNSNMLHLLVEARDEGEPVRSTVTSVALVVVDANDHKPLFHQDIYT LTTAEDTPPETTLLTISAQDEDWSPENTHLDYTIVGGNEEKRFCLEVKKIPVENQMKNVG RLVLCNPLDRETTEYYELAVSVSDRGTPPLNSSSIIKVTVTDCNDNAPVFSSAQYHAEVS ESSQIGTSLVHVSALDPDLGDNGLVHYEIISGNSKGHLKLDPQSGILMVNQSFDYEEDLR YILTIRATDGGQASENQNMAFAVVFVNILDENDNTPFFMFPSVTCSMLENLPAFTHTCSV HAVDKDAGPYGLLTYSILSSCFMDYGSGSPERKEAFAIDALSGDIHTRQTFDYERESEYC FVVEAKDKGDKSATVRVQVAIKGVDEFSPIFTQKQYHFLLPENPKTGETVGFVMAMDHDG GVDGLVEYSLLTPTTFFSINKTIGAILVSGPVYRRRISHASEDLVELVVSAGSPRLGSRT TTCLVFVNISSSAEAFIGVQLDSHMFSLSVSLLLFLFVLVIFAGLVLRCKVKEAVLKKAS AIAAQLNHGTDSSGESNSQIHSDVSLQELTQVGGFVAKRDVSNPYTQSDSSGRGSAEGET AEDQEIKWINEFPCYKREDVNKFTTEIPNSIIPVDKISCHSIDVGPEHILSLTKCLAQSI ASTESLNHFKEEGGGEGLLPEILRVKDLEDSMGVRGYAPLSKAQASADSLTSLVCLEEPL EGSYSWDFLLDWEPRFHSLAAVFTDIGMLPDEELQGGHEDFASESSSLMYPPPLITRVAQ PGIRTVPPRKPGRVPTLSRKPSYPKYAYSPLARNTGLTPSAMTPTFTPSLSSLTIRTPSS SPVVSDTGVGGIRLDAGPHTASLLEAEIQV NT seq 9813 nt NT seq  +upstreamnt  +downstreamnt atgggcggaaggaatgcgccagttgcgctcgtccgggtgttcctcctggcgctgtttagc gcgcagtcgctcggacgggtcttcaacctgacgctgtccgtgaaggagggcctgcccgct aaaaccatcgttggagatctgggagcggtcctgagcgcgccgagcaccggcttcttcatc tcagagagcagagactcgtatgtgttcagagacctggagatagacgcggacacgggcatc atctccacggtggcgggccttgacagggaaagcagagaccggtacgagttcgtggcagct actctcactggagagatgatacgggtgaggataaaagtggaggacgtgaacgaccactca cctgtgtttcccagtaaggaagtggagctgggaatctcagagctgagccccccggggagt cgctttccgcttgaaggcgcagcagaccgggatgaggaggagttcagcacgcggggttac aggatcagagagagcgagatggaagaattgttccacttggattttcgaatcggatctgag acgcagcacagcctggatctggtcctgaacagcagagtagacagagaaacacatgacttc tacactctgaccattgaggcctttgatgggggaatcccagccaggaccgggacagtccag gttgacatccgcatcctggatgagaacgacaaccctcctgtgttcaaccagagtgaatac cacagctcagtacgtgaggatgctcccatcgggtccattgtctctcaggtgctggccagt gacagtgacctgggtgacaacagcaggatcacttatgagatcaataggcggcagagtgac cccaaccatgtgttctccattaacgaaaccacaggatttatttatctgaacaagccgctg gattttgaaattcaaccgtttcacgagctgattgtcagagccagagacgacggtgctcag cctgagtacagcagcacctttgttggtgtcaaggtgcttaacatcaacgacaacagcccc accatcagtgtgctgttcctcagtgagacaggagaagctgtggtgtcagaggcagccgcc attggggaatacgtggcccggatttctgtgtcagaccctgacccggaggagcacggaatc accgtctctcttgcgggaggagatgggaagtttaccctgaagcaaacagatgattttctg tatgcgttgtgtgtcaactctgagctggacagggaagaaaaggatctgtatgcgctgaag gtgcaagcatctgattctggaagcccccctctgagcagtgagacacttctcctcctgaag gtgtctgatgccaacgactgccagccggtctttgaacaggatgtgtacactgtcagcatc gctgaggatgctcctgagggcagctccctcgtacgaacaagggcccgggacgctgatgaa ggtgtcaactcaaacatcagatactccatcctgaagtcacaccaggacagcctggtcgcc attgacccgacctctggcctggttaccacggccacaggcctcgacagggagactcagatg gaggtgtggttcctggtgttggcagaggatggaggggagccatctttgtcgtctacagct acagtcacagtgctggtggaggatgtgaatgacaacgagccggtgttccagcagcagctg tacaacgtgtccatacctgagcacatggatgctggaagctgcttcttacaagttgttgcc acggacgcagacagccctgagtttggtgctctgctctactctctgtcggatggatttgac agtcaggaaagtcatcctgttttccaaatcaatccacacacaggagagctgtgtgtctct caggatatcgatcgggacgacgggatgagtgtccatgacattttgatcaaagctgaagat ccaggaggcctgagtgctcagtcatatgttcatattgagatacaagacttaaatgacaac cctccagtgttcagccctgaggagtacatcgtgagcgtcagcagccacgcaccgcctggt accgaggttgtcaacgttatcgctacagaccaggactccggccggttcggacagatcacc tacgaaattcatccaggagacttgtccagtttgtttacactggatagacacacaggaatg ctctttttgaactcttctctgacacacttgggtgcagccagcatgaagctcctaataaca gcacaggatggagatggcttgtcttcagccagacccgcagaggtcacaatcaacgttgtc caaagtggtcaggctccagcggtgttccagaggtcgcgctacgccttcacagtgcctgaa gacgcaccgctgggaacatctgtgggaacagtggaggccagcaacctgagcgacgctaca gagcccgtttcttaccgaatctcttctggaaacgtttacagttggttttctgtccatcca aagtctggtgtgatcaataccattaaacctctggaccatgagtctcagccttatgccctg ctgttccttcagtcctacacagacacttctcctatttacagcaccacccaggtcaacatt accatcactgatgtcaatgacaatgcccctgtgtttcccaagaggagagacaccatcact gtttctcgaagcactcggcctggaacagtgctgttcatcgctcacgcacatgaccatgac agcggtgccaatggcgtagtgcagtatcgtatgaaaagcagcagaaatgaagtgtttgcc attgactcaaaccttggaacggttagacttaataagagcttacaagtgagtcagcagcaa agatacaacttggaaatcttggcgaaagacgaaggaaaaccttccctgagctccaccctg accctttcggttaacattgaccacacagctgcagatgacagcctggcctttgagacgctg gtctaccaggtggagataggggaaggctatcgtaaagactctcgcgtcatccaggtgagg gcacaccgcacccgagggtctcacacttcaaactcaggtctcacttactccttggaggca gaagctggattccctccgcctccttttcgcatccactcaaagtctggatggttgtatctc tccagcaatcttgactttgagaccgagtcaaggtatcgttttcaggtgttgtccacttcc ggagaggcttcactggccaatgtcacagcaacagcaatggtgactgtactggtgctggac gtcaatgacaatcccccagtgttcagcagtgatgtgtactacttcactgtatcagagggg tcatctccacaaggcctggtgggaacagtcaaagccaaggataaggattctgggaagaac agtcagctgtcctacatcctcctctcagatgggaaatacttccgcatcaatgctaaaaca ggtgaaatcatcaactgggtggcgctggaccgggagcaacacagccagcacagcctgacc gttatggtgacagaccaaggtcaccctcgtctcaatgccaccgccaatgttcatgtcctg gtcactgacatcaatgacaacactccacagtttaatcatctgccttccagcaaagagctg aatgttcctatatgggcaggcgtacctgcaggattcttggtgaccaacatgtttgccaaa gacttggatgctggagagaatggaacggtcacccattcattagtaacagttggatcagag gagaatggtctcaggcactttgagattgacagtaaaaatggagacatcagaaccacgcag ctcttcagtcagagaactgaaccatcttacactctgaagataacagccagggatggtgga gccccgtctctggaggatacagcagtggttcacatacaggtttatgggttggaggatcag tacggcagctcagatcaccaagcagtgaggcatttctcggttagggaggacgcggagcct gcaacggtcatcggctctgtcagtgtttcggataaaggcaggtttcagtatagcatcgcc gagggagacgggagcattttctttggaatcgacggcacgtctggtgacatctacgtcaac cagctgctggactacgagtctgccaagcagtacttcctggtggctcgagtggaagacgtc ggtgcatctgttggtttaaacatttccgcgctggtgagcgtcacagtggaggacgtgaac gaccacgccccctggttccccgataaactgctgatgttcggtctgagggaagacgccgct gttggatcgctggcctttgcttttcatgccagagacgccgatgggacttttgcaaacagt gcccttcgctacactctgacctttgaccccgaagtcagtggatcacccccacacttcccc tttcacatgaactcacacacaggtgcaatgacggttgcggcaccgttagaccgcgagagc acgccgacgtttgttttcgctgtcaccgccacggaccaggcagagaggacggatgagcgt aaacagacgtcagtgacggttcggctcctcctgctggacgtgaacgataaccggcctgtg ttcgtgtctgctcagtcagtgcagctgatggaggacacggaggtgggcagtctgctgcac cattttgtggcaatagatggtgatcagggggagaatggattgatctcctactccattata aatggaaacaggaagggattcttcacactggaagagaaaactggccttctgtttctctct gcccctttggactatgagacccagcgtgtccaccgtctgactgtccgagcagtggaccag ggcgtcccctcgctgtcctccacccagaccctgacagtggaggtgggagatgttaacgac cagccccccatcttcagtcagaccacctatgttaccagtgtggtggagaataaaggccct ggagagccactgctcagagtctctgcctctgacatggattcagaggacaacgccgtggtg tggtacagcctgctgccgggccccggctatgagctgttcagcatcaacccgtacactggt ctgatcaccaccacgactcacctggaccgagaacaggagcaacatttcaccctcagagtc caggctcgggacaacggtttccgtcctctgtcggggacagccacggtcttgtgttccatc ctggatgacaacgacaaccctccagagtttatgcagccactgttccagatcagcctgcca gaaaatctttctcctggagttatccatacagctcttgcctctgaccctgatctgggagaa aatggcactattcactactctgtactaggtgaggactacagaggccgattcacaatcaac agtgagaccggagcgatcagcaccatgcaggttctggatcgggaggaaattcagaactac actctcacccttcaggctcaggattcgggccccgctcctctcagctccaccacgcagctt ctccttttcctgctagaccagaacgacaacgccccctccttcagtcctgagagctaccac acctccgtcagtgaaggcttaccgtcaggggctgaggtcttgcagctgaccgccttcgat cccgacgagggacccaacggagaagtgacctacaccctgacagacgacaacagccacggg gctttttcgatggaccccttcactggagtggtccgcaccaccaggtctctggacagagag agccgggctctgtacactctgaaagccgtggccacagatggctccgctcagggcccgctg acctctgtggcttcactgaccattcaggtggacgacgtcaacgataacgtgcccgtctgc gaccaaaacccacttcatgcctgggtctctatgcggacgcaaccaaatcagatcgtgacc acagtggtcgctacagacgctgaccagggtgagaacgggacggtccagttcacgttttca ttcgcggagagtctgtttgacatcaactccgcttcaggagagatttcactcaggaggcga gtgagagcgggtttctctggcagaaagctggaggtcctggtctcagaccgaggacgtcct cctctgaccgccacctgcctggtgttggtccatctgaagggagagcatgacgagcttcag ttcacaaacaaagtgtacaatgctaccgtcaaggagaacagcagagcaggtacttggatt acaaaagtggaggccagtgacgacaccaacagcagacagaggataacttacacgatattt agcggcaacgagaatacagcgttctccataaaccgctacacaggtgagatccgagtgcag aaggaaaactccctggactttgaggcgagccctcagatccagctggtggttctggccgac agcgggctgcacacggcccactgcagggtctccgtcacgctgctggacgtcaacgataac gcaccgctgtttgaactgagcaactacagaacggctgtttgggagggacaagttcgtaac acctacgtcatgcaggtgtttgcctctgatgctgacagcggtgaaaacggacagattgag tattccatcctgtcaggcaacattaatgaagctttcattctggactctgtgagagggatc cttgctaccaacgttctgctggaccgtgaaataactccctcttacaggctgattctgcag gcaaaagacaaggggaagcctccactgagcagcactgccaccgtcagagtccaggtggtg gacgtcaacgacaacagcccggccatcccacccatggagctcgtctatatatatgaaaat ctaccagctggttatgtggtcacccaggtgactgcgaatgatgtggacctcggttcaacc atcagctacagtttttcaaacagcagcatcaccagcgacccattcgctattgaccgctac acgggtgtcatcacgctgacccgacctctagactacgaggccgagacggagttcactctg agagtgtctgcgtcggactcgctccatcaaaccagtggacaggtcacagttcaagtttta gatgccaacgacaacagtccagtcttcacccaagtgtcgtaccaggtggaagtgtcagag ctggtctcagctgacactttagttgtgaatgttgctgctacagacaaagattctggtctc aatgggaagatcagctacagacttctttcttctcctcttcatgcattctacatccagaaa gataatggttctattttcaccaacaagcctttaaagaccatcacaaacagcaacatgctc catcttctggttgaggcaagagatgagggcgaacccgttcgatccacagtcacctctgtg gccctggtggttgtagacgcaaacgaccataaacctttgtttcaccaggatatttacaca ctcaccactgctgaagatacgcccccggaaaccaccctgctcacaatttctgcacaggac gaagattggagcccagaaaacactcatttggactacaccatcgtcggcggaaatgaagaa aagcgattctgtttagaagtgaaaaagattcccgttgaaaatcaaatgaaaaatgtcgga aggctggttttatgtaatcccttggaccgtgagacaactgagtattatgaattggcagtt agcgtttctgatcgaggaacgcctcccctgaacagctcatcgatcattaaagtgactgtt actgactgcaatgacaatgctccggtcttctccagtgcacagtatcatgcagaggtgagt gaaagcagccagataggaaccagcttggtccacgttagtgctctggatcctgaccttggt gacaatggccttgtccattatgaaattatttctgggaacagtaaaggtcacctcaagctg gacccccagtctggcattttgatggtcaaccaatcatttgactatgaggaggatttaagg tatatcctcaccatcagagctaccgatgggggccaggcatcagaaaaccaaaacatggct tttgcagtcgtctttgttaacattctggatgagaatgacaacactccattcttcatgttc ccctcagttacttgctccatgctggaaaacctcccagcattcacccatacttgttctgtc catgctgttgacaaagacgctggtccctatggtctgctgacctactcaattctgtcctct tgcttcatggactatggcagtggaagcccagagaggaaggaggcctttgccattgatgcc cttagtggcgacattcacaccagacaaacatttgactatgaacgtgagagtgagtactgc tttgtagtggaggccaaagacaaaggtgacaaatcagctacggtaagagtccaagtagcc ataaagggagttgatgagttcagtcccatcttcactcagaagcagtaccacttccttctt ccagaaaatcccaagactggtgagacagtcggttttgtgatggcaatggaccatgatgga ggagtggacgggctggtagagtactcacttttgactccaacaacatttttttcaattaac aaaacaattggagctatcttggtgtccggtcccgtgtatcgcagaagaatcagccatgca agcgaggatctggtggaactggtcgtgtctgcaggtagtcccagattgggttccagaaca acaacttgcttggtttttgtcaatatctccagctcagccgaagcatttattggagttcag cttgattcccacatgtttagtctgagtgtgtcgctgcttttgttcctctttgtcttagtt atctttgcgggcttggttctcagatgtaaagttaaagaagctgtcctgaaaaaggcctct gccattgctgcacagttgaaccatggtactgactcatccggtgaatcgaacagccagatt cacagtgacgtttctttgcaggagttgacacaagtcggaggttttgttgcaaagagagac gtctctaacccgtacacccagtcagattcaagtggccgtggatcggcagagggtgagaca gctgaggatcaggaaatcaagtggatcaatgagtttccctgttataaaagagaggacgtc aacaagtttaccacagagattcccaactctatcataccggttgataagatctcctgccac tctattgacgtagggccagaacatattttatcgcttactaaatgtttagcacagagcata gcaagcacagaaagtctcaaccatttcaaagaggagggtggaggggaaggattactgcct gaaatacttagagttaaagatttagaggattccatgggggtaagaggatatgcccctctc tccaaggctcaagcttctgcagattctctgacttcactggtgtgccttgaagagccactg gagggtagctacagctgggatttccttttagactgggaaccacgctttcactctctggct gctgtgttcactgatataggtatgcttcctgatgaggagcttcaaggaggccatgaggac tttgcttcagagtcaagttctctcatgtacccaccgcctctcataaccagagtggctcag ccaggcatccggactgttcctccaagaaaacctggacgagtaccaaccctgagcaggaag ccttcctaccccaaatatgcttattctccattagccaggaacacaggactcaccccgtca gctatgacacccactttcaccccatctctgtcctctctcaccattaggacccccagctct tcaccagttgtctcggacacaggagttggggggattagactcgatgcagggccccatact gcaagtcttttggaggctgaaatccaagtgtag

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