Xiphophorus hellerii (green swordtail): 116720450
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Entry
116720450 CDS
T07363
Symbol
tbc1d1
Name
(RefSeq) TBC1 domain family member 1 isoform X1
KO
K18341
TBC1 domain family member 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116720450 (tbc1d1)
Membrane trafficking [BR:
xhe04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
116720450 (tbc1d1)
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
116720450 (tbc1d1)
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Rab associated proteins
116720450 (tbc1d1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RabGAP-TBC
RabGap-TBC_2
DUF3350
PID
FKBP15
DUF2594
Pept_S41_N
Motif
Other DBs
NCBI-GeneID:
116720450
NCBI-ProteinID:
XP_032419620
LinkDB
All DBs
Position
5:13400450..13454363
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AA seq
1358 aa
AA seq
DB search
MDGLYFDVKPKVQRPRSSEKTRHNLTPNHHSCPSLSRLNSAAQSPQKCAGAWERVAPWRG
QMDEEEIRYQLTMIGFRVVHYLTTMAMLPWVVAEICRSSKKDPGAGPRHAAGGSPSCSNK
TVFLCVSASWVRCVSVLAERRLWDPLTHTVLFECRPHQVTKLIHNSQEPSIFACLVKDSL
KCACYVFQGLDSTKVPEIISTLRQAGKSSARNNDICPDSIKTSTSSEGSDSSETCLSSAS
TTSNSTAPTSAVSPTTFAKKFEVLFCGRVSVAHKKAPPALIDECIEKFSQLHGSGTTDKG
GGGLVDGLRRAFTFPSSGLGNGSVRNGTAGSATTGTSSALFKRDSSFPSLHLDENGLCPE
ISNNNTTDSITCSTTVQPTSLQENRTMLFTVGKSQIFLVSPDTKKVAIEKSFREISFCSQ
GIRHVDHFGFICREMAEGGSCHFVCYVFQCTDESLVDEIMLTLKQAFSVAALQQNAKTQS
QQCDSCPVQQLHRLCERIEGLHPSKTKLELQKHLATLDNDEQASVFENTMRARPKSDQEE
NELVMASLRNMYEEKQKGHLHSSLDNSKQVSEDAAPAPQETQQQSSSRQRLEQFKSRAKR
SLTESLEGIWKGSNKAKPQRENSQGSESSSSSGAINSSRGQPCFEDPITPSPHLRPTSPL
RGHNSTGDLKLLDSSIPLTSSSSSLPGDPEPQGFRRRASTFSHSPTPSSVLEDSPLYMQT
HSPQELSAATKPKLVRHYSVSTDNPHQSKNLPTDSTLPPLPPFPSCHSPLLLHHPSSPSA
GARFNKRSPLGGLRARLHSSSSVPNFLKFQFLAPVQENDCPEPKSRDVAALSTSRAACVA
GESPLRNHRHSWRQQIFLRVATPQKGTDPTERVDPCLDGGLICVGQVSGVGNGDSAMRAV
PEEGTKRSKVELRELWRKAILQQILLQRMESENQKLQASESDLQNKRLKLDYEEITPCLK
EVTVVWEKLLSTPGRTKVKFDTETIHAAVAQGVPRQHRGEIWKFLSEQYLLQQTVPSRPP
SNHTPYKELLKQLTSQQHAILIDLGRTFPTHPYFQAQLGAGQLSLFNILKAYSLLDPEVG
YCQGLSFIAGVLLLHMGEEDAFNMLKFLMFDVGLRKQYRPDMIILQIQMYQLSRLLHDYH
RDLHGHLEQQEIGPSLYATPWFLTLFASHFPLGFVARVFDMLFLQGSEVIFKVALSLLGS
HKPLILQHDSLESIVDFIKTTLPNLGLVQMEKTINQVCEMDVSKQLQAYEVEYHVLQDEL
LDTPPTLNQQQRAAQLERTNQSLRQQNLDLLEELQVSHARVCNLESRVEALAQSEGQLKE
QVSALEEEKKQLANTIAHLHRLLTELGINPDLDGQMLP
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggatggactttactttgatgtgaaaccaaaagtccagagaccacgaagctctgagaaa
actcgacataatctaaccccgaaccatcactcgtgtccctccctttcacgcctcaactct
gcagctcagagtccccagaaatgtgccggagcttgggagagggtagcaccatggaggggg
cagatggacgaggaagagataagataccaacttacaatgattggtttcagggtagttcac
tacctgaccaccatggccatgctgccctgggtggtggcagagatctgcaggtcctccaag
aaggatccgggtgctgggccacgtcatgctgcaggaggttctccttcatgcagtaataag
actgtgtttctgtgtgtgtctgcatcctgggtgcggtgtgtgtccgtcctggctgagcgc
cgcctctgggaccctctgacacacacagtgctgtttgaatgtcgtcctcatcaagtgacc
aagttaattcacaacagccaggagcccagtatctttgcctgcctggtgaaagactcgctg
aagtgtgcctgctacgtcttccagggcctggacagcaccaaggtccctgagatcatcagt
acgttgaggcaggctggcaaaagctcagcacgcaacaatgacatctgccctgactccata
aagacgtccacaagttcagaaggcagtgattcttcagaaacatgcctctcctcagcctct
actacatcaaactccaccgctcccacctctgctgtgtctccaacaacgtttgctaaaaag
tttgaggtacttttctgcggcagagtgagtgttgctcacaagaaagccccacctgcttta
atagatgagtgtattgagaagttcagtcagctgcatggctcagggacaacagataaggga
ggtggaggtttggtggatgggctcaggagggcgtttaccttcccatcctctggactggga
aatggttctgttcggaacggtacagcaggaagcgccaccactgggacgagctctgctctg
tttaagagagactccagcttcccaagcctgcacctcgatgaaaacggcctttgtccagaa
atttctaacaacaacactacagattcgatcacctgctcgacgacggtgcagccaaccagc
ctgcaggagaaccggaccatgctgtttacggtgggcaagtcccagatcttcttggtcagt
ccagacactaagaaagttgccatagaaaagagtttccgagaaatctcattttgctctcag
ggaattcgtcatgtcgatcactttggcttcatttgcagagaaatggcagaaggcggaagc
tgccattttgtgtgctatgtcttccagtgcactgatgaatcattggtggatgagatcatg
ttgactttgaagcaggcgttctctgtggctgccctacagcagaacgcaaagacccagagc
cagcagtgtgacagctgccctgttcagcagctccacaggctgtgtgagagaatagaaggt
ttgcacccttccaaaacaaagctagagcttcagaagcacttggccactttagacaatgat
gagcaggcttcagtctttgaaaacactatgcgggctcgtcctaagagcgatcaggaagaa
aatgaactagtgatggcctccctaaggaatatgtatgaggaaaaacagaaaggtcatctg
cactcttctcttgacaacagcaaacaggtctctgaagatgcagctcctgcacctcaggag
acacaacagcagagcagcagtcggcagcggctggagcagttcaagtccagagcgaagcgc
tctcttaccgagtccttagaaggcatctggaaggggagcaacaaagccaaacctcagagg
gagaacagtcagggaagtgagagcagctcttcttctggtgctatcaacagtagcagaggt
cagccgtgcttcgaggaccccataactccctcacctcatctacgacccaccagccctctc
agaggccacaactccactggagacttgaagcttcttgactcgtctattcctctgacttcg
tcgtcctcctctctacctggggatcccgagccgcagggcttccgccgacgggccagcacc
ttcagtcattcccccaccccgtcgtcagtgctcgaggactcccccctatacatgcagact
cattcaccacaggaactgagtgcagctacgaagcccaagctcgtgcgacactactctgtg
agcacagacaatcctcaccaaagcaaaaatctcccaaccgactccacccttcctcctctt
cctccctttccttcatgccattctcctcttctcctccatcatccttcctcaccttctgct
ggagcccgtttcaataaaagaagtcctctgggtggtctccgtgcccgtctgcactcctcc
tcctctgtccctaactttctgaaatttcaatttctggctcctgtccaagagaacgattgt
cccgagccaaaaagcagggatgttgctgctctctctacatcaagagcagcttgtgtggcc
ggtgaaagtccactgcgaaaccacagacactcgtggaggcagcagatcttcctgcgggtt
gctactcctcagaaaggcacagaccccactgagcgggtggatccctgcctagatgggggt
ctgatatgtgtgggccaggtgtcaggggtaggaaatggagactcagccatgagagccgtg
ccagaggaggggacgaagaggagcaaagtggagctgagggagctgtggaggaaggccatc
ctacagcagatcctgctgcagcgaatggagagtgagaaccagaaactgcaagcctcagag
agcgatctgcagaacaagcgcctgaagctggattatgaagaaatcactccatgtctgaag
gaggtcactgtggtgtgggagaaactcctgagtacacctggcagaacaaaagtcaaattt
gacacagagaccatacatgctgcagttgcacaaggtgtgccaaggcagcatcgaggtgag
atctggaagttcctctctgagcagtatttactccagcagacggttccctcgcggcccccc
tccaaccacactccatacaaagagcttctgaagcaactcacctcgcagcagcacgccatc
ctcatagacctcggtcgtacttttcccactcatccatacttccaagcgcagctgggagca
gggcagctctcgctgttcaacatactgaaagcttactctctgcttgaccccgaggtgggc
tactgtcagggcctgtccttcattgctggagttctgcttttacacatgggggaggaggat
gcattcaacatgctcaaatttctgatgtttgatgtcgggcttcgtaagcagtacaggcct
gatatgattatcctgcagattcagatgtaccagctgtctcggctgcttcatgactaccac
agggatctgcacggccacctggagcagcaggagatcggccccagcttatacgccaccccc
tggttcctcacgctgttcgcatcgcacttccccctcggctttgtggcccgtgtcttcgat
atgttgttcctccagggttcagaggttatcttcaaagtagccttgagcctgctgggtagc
cacaagcctctgatcctgcagcacgacagcctggagtccatagtggacttcataaagact
acactacccaacctcggcctggtgcagatggagaaaaccataaaccaggtttgtgagatg
gatgtgtccaagcagctgcaggcctatgaggttgagtaccatgtgctgcaggatgagctg
ctggacacgcccccaactctcaaccagcagcaaagagctgcgcagctggagaggaccaat
cagagcctccggcagcagaacctggacctgttggaggagctgcaggtgtcccacgcgcgg
gtctgcaacctggagagtcgggtggaggccctggcgcagtcggagggacagctgaaggag
caggtttctgctctcgaggaggaaaagaagcagctggccaacaccatcgcacacctccac
aggctcctcaccgagctgggcatcaacccagacctcgatgggcagatgctcccctaa
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