Xiphophorus hellerii (green swordtail): 116720535
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Entry
116720535 CDS
T07363
Symbol
lrba
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116720535 (lrba)
Membrane trafficking [BR:
xhe04131
]
Endosome - Lysosome transport
Others
Others
116720535 (lrba)
Endosome - Golgi transport
116720535 (lrba)
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
116720535 (lrba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
Neurobeachin
WD40_Prp19
Laminin_G_3
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML
WDR55
Beta-prop_WDR75_1st
EIF3I
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_2nd
SUKH_6
Motif
Other DBs
NCBI-GeneID:
116720535
NCBI-ProteinID:
XP_032419733
LinkDB
All DBs
Position
5:complement(29784807..30025138)
Genome browser
AA seq
2897 aa
AA seq
DB search
MASAEAAEPGDGKDGRAGAMQLNPTVPIRGIRMKFAVLAGLVEVGEVSNRDIVETVFNLL
VGGQFDLEMNFIIQEPESIVCMVELLDKCEPTCQAEIWSIFTAILKKSVRNLQVCTEVEL
IQQVLHRISTTDSMIADLLVDMLGVLASYSITVKELKLFFSKLQGEQGQWPRHAVKLLSV
LKYMAHRNGPDSFFSFPGKNAAAIALPPIARWPYQNGFTFHTWIRMDPLNNINVDKDKPY
LYCFRTNKGMGYSAHFVGGCLIVTSLKSKGKGFQHCVKYDFKPQKWYMVTLVHVYNRWKN
SEISCFVNGELASYGDIAWFVNTSDTFDKCFLGSSETADVNRVFCGQMGAVYLFAEALSA
AQILAIYQLGPGYQGTFKHRAESDLLFEEHHKTLLYDGKLASGIAFTYNPCATDAQLCLE
SSPKDNASIFVHSPHALMLQDVKAVVTHSVQSGIHSIGGIQVLFPLFAQLDYWQPCSQEP
DTSVCCTLLSFMMELLKNSVSMQEQVLACKGFLVIGYTLEKSSKVHVTRPVLDIVLAFSR
YLSNLQNGIYLLKQLCDHILFNPAIWIHAPAKVQLMLYTYLATEFISTVTIYNAVRRVGT
VLQVMHTLKYFYWVVNPHDRSGVIPKGVDGPRPNQKEMLSLRAFLLLFIKQLIMKDHGVK
EDELQSILNYLLTMHEDENLMDVLQLLVALMSEHPGTMVQAFDQRNGIRVIYKLLASKNE
GIRIQALKVMGYFLKSLSAKRKSEVMLTHGLFSLLTERLMLHSNPFTMTTYNTLFEILTE
QICTQVIHKQHPDPDSSVKIVNPQMLKVIAALLKNCPQSPESMEVRRVFLSDMIKLFNNS
RENRRSLLQCSVWQEWMLSLCFVSPSNNEEQKITEMVYAVFRILLYHAIKYEWGGWRVWV
DTLSITHSKVTFEQHKESLSRMFRQYQHQGSTSSHSTIRTISGVSQISEDTKSVNGSPAE
EMAPSTVVELTVNEGSQKSLRSASSSTITSMPVESAEDRSQPSVIVSNILAGAEEEQKVE
FSSGDQSNVDKETSTAVHKDEVTEPPSEKSSQNAETSGNAQSEASGPTTKEDSAAPTKDD
AQTEVAHLEQGDSSELSTEESSVASEKGDESKQMSSEPPAPLENSVLGGASIFNEDLVDV
SSVSDQINPSDVDDSQEESSYASAAAGEEGEPVKKAEDEHEGDGSKTKDLREQEPKTEEG
KQETGTVRREEQEKDSVENQVPCSESPAPETEVADQSVKELTKENVSGPESSSKSEGAAS
DRQEAAAPEATPQSQPSESSMSATEETPPDAPDTSTPGSSTSKTPDPARKTKETKIARLD
VANVAVDTERLELKETSITESSQGQTTGAAGEAGSPPGRPEDSSTSAPRSTMFRIPEFRW
SHMHQRLLTDLLFSIETDVQAWRSHSTKTVLDFVNSSENTVFVHNSIHLVSQVVDNLIMA
CGGILPLLSAATSASHELENIEPSQGLPVEASVTFLQRLINLADVLIFASSLNFTEIEAE
KNMSSGGILRQCLRLVCAIAVRNCLECQQAQFKGAEGPTRSYTVMPSTAVGTAMSASAQS
PVDAVTGGMSTVRDLDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKY
RDILEPHNDRKPPLRSQSTRSTDSSAEVENGVSLRRYDSGIGDDHTSAVASEADLASSGG
PDAVSEALSTLSSEVRGPTSADSKSKNVKDILRSLVSSPAEDVMVDPSLLPLSFMGPVTH
LDRRSSLQFRSFDRSVVVAPRQAGVLPSQVSPAPAQTSAAASVSAGTPVDGVAVVSSGDA
SQVLSVDAADSGGQVPASSSLPSVPPLSPVTQNTAPNMSISERLEHALEKAAPLLREIFV
DFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIE
LVNEGRLLSHTMKDHLVRVANEAEFILSRQRAEDIHKHAEFESNCAQYAAEKRDEEKMCD
HLIRAAKFRDHMTSTQLIQKIVNILTDKHGAWGSSSVSRPREFWRLDYWEDDLRRRRRFV
RNPFGSSHSEAALKAAAEHASEDDILKQSIRSQALANQNTESEASLDGDDDTLSSLEDKD
LENQTGPVNLSTSAQLVAPAAVVKGTLSVTASELFFEVDEDDPSYKAVDPKILSYTEGLH
GKWLFTEIRAVFSRRYLLQNTALEVFMANRTAVMFNFPDAATVKKVVHSLPRVGLGTNFG
LPQIRRISLATPRQLFKTSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWII
TNYESPELDLTLPSNYRDLSKPIGALNPKRAAFFSDRYESWEDDQVPKFHYGTHYSTSSF
TLMWLLRIEPFTTFFLNFQGGKFDHADRTFSSVFRAWRNCQRDTSDVKELIPEFFYLPEM
FVNANNYNLGVMEDGTVVSDVDLPPWAKSSEEFVRINRQALESEFVSCQLHQWIDLIFGY
KQQGPEAARALNVFYYLTYEGAVNLSSINDPMLREAVESQIRSFGQTPSQLLIEPHPPRS
SAMQVYLLLQTPLMFTEQMQQDVIMVLKFPSNSPVTHVAANTQPGLASPAIITVTANRLF
SVNKWHGLAGHQNAGEQQYQLPVEIDPLIASNVGCHRRQISDLLDQSIQISSQCFAITAD
NRFILLCGFWDKSFRVYSTDTGKLTQIVFGHRDVVTCLARSESYIGGDCYVLTGSRDATL
LLWYWNGKLSSIGESPGTEFTTPRAILTGHDCEVTSVSVCAELGLVISGCKEGPCLVHSM
NGDLLRTLEGPESCLRPRLIQSSSEGHCMIYYDKGHFCLFSVNGKLLLHMEVQDNIKAML
LSRDGQYLLTGGDGGVVSVWQVSDLKQLFTFPGCDAGIRSMAMSHDQRCIITGMASGSIV
LFYNDFNRWHHEYQTRY
NT seq
8694 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgcagaggcggcggagccaggtgatggaaaggacgggcgagcgggcgccatg
cagctcaaccccacggtccccatcagggggatcaggatgaagttcgccgtgctggctggc
ctggtggaagttggagaagtttccaaccgagacatcgtggagaccgtgttcaacttgctg
gtcggcggtcagtttgacctcgaaatgaacttcatcatccaggagccagagagcattgtg
tgcatggtggagctgctggacaagtgtgagcccacgtgtcaggccgagatctggagcatc
ttcaccgccatcctcaagaaaagcgtgcggaacctgcaggtgtgcactgaggtggagctc
atccagcaggtgctgcacaggatctccaccactgacagcatgattgcagacctgctggtg
gacatgttgggtgtgctcgccagctacagcatcacagtaaaggagctcaagctttttttc
agcaagctgcaaggggagcagggccagtggccgcgtcacgccgtgaagcttctgtcggtg
ctgaagtacatggctcacaggaacggtccagactccttcttcagcttccctgggaagaat
gcagctgctatagctctaccccccattgcaagatggccgtaccagaatggatttaccttc
cacacgtggatccgaatggatcctctaaacaacatcaacgtggataaagacaagccttat
ctatactgcttccgcaccaacaaaggcatgggctactctgcacactttgtgggcggctgt
ttgatagtgacctcattgaagtcaaagggcaaaggcttccagcactgcgtgaagtacgac
ttcaaaccacagaagtggtacatggtgactctggttcacgtctacaatcggtggaagaac
agtgaaatcagctgctttgtgaacggagagctggcctcctacggagacatcgcctggttc
gtcaacaccagcgacacgttcgacaagtgcttcctcggatcgtctgagacggccgacgtg
aaccgtgtcttctgtggacagatgggcgccgtttacctgtttgcagaagctctcagcgcc
gctcagatcctggccatctatcagctgggccctggctaccagggaacgttcaagcacagg
gcggagagcgaccttctctttgaggagcatcataagacgctgctgtacgacggcaagctg
gcctccggcatcgccttcacctacaacccctgcgccacagacgcccagctctgcctggag
tcctccccgaaggacaacgcctccatctttgtccactctccacacgctctcatgctgcag
gacgtgaaggctgtggtaactcactcggtgcagagtggcatccactccatcggtggcatc
caggtcctcttccctctgtttgcacagctggattattggcagccttgcagtcaggagccc
gacacatctgtctgctgcacgctgctatccttcatgatggagctcttgaagaactccgtg
tccatgcaggagcaggttctggcctgcaagggcttcctcgtcatcggctacacgctggag
aagtcctccaaggtgcatgtaacgcggcccgtcctggacattgtcctggccttctccaga
tacctcagcaacctgcagaatggcatctacttactcaagcagctgtgtgatcacattctg
ttcaacccagccatctggatccacgcccctgccaaggtgcagctgatgctctacacctac
ttggcgacagagttcatcagcacggtgacaatttataacgccgtccgcagggtgggcacc
gtgctgcaggtcatgcataccctgaagtacttctattgggtcgtcaacccccacgaccgc
agcggagtcatacccaaaggcgtcgacggtccgcggcccaatcagaaggagatgctctct
ctgcgagcctttctgctgctcttcatcaagcagctcattatgaaggatcatggcgtgaag
gaagacgagctgcagagcatcctcaactacctccttaccatgcacgaggatgaaaacctg
atggatgtgctgcagttgttggtggctctgatgtctgaacaccctggcaccatggtccaa
gccttcgaccagagaaacggaatccgggttatttataagctgctggcctccaaaaatgaa
gggataagaatccaggccctgaaggtcatgggctactttctaaagagcttatcagcaaag
aggaagtctgaggtcatgctgacccacggccttttctcgctgctcaccgaacgcctgatg
ctccactccaacccgttcaccatgacgacctacaacaccctgtttgagattctaacagag
cagatctgcacccaggtgatccacaagcagcatccagaccccgactcctctgtgaagatc
gtcaacccgcagatgctgaaggtaatcgctgctctgctgaagaactgcccccagtcgcct
gagagcatggaggtccgccgggtcttcctgtcagacatgatcaagttgttcaataacagc
cgagagaaccgcaggagcctgctgcagtgctccgtgtggcaggagtggatgctctccctc
tgcttcgtcagcccgagcaacaacgaggagcagaaaatcaccgagatggtctacgccgtc
ttccgcatcctgctctaccacgccatcaagtacgagtggggcggctggcgcgtctgggtg
gacaccttgtccatcacccactccaaggtgacctttgagcagcacaaagaaagtttgtcc
cgcatgttccgtcagtaccagcaccaggggtcgaccagttctcacagcaccattcgcacc
atctctggagtgagccaaatctctgaagataccaaatctgtcaacgggtcgcctgctgaa
gagatggcgccctcaacggtcgtcgagctcacagtaaacgaagggtcccaaaaatccctc
cgctcagcgtccagttccaccatcacttctatgcctgtggagtctgcagaggacaggagc
caaccatccgtcatcgtgtccaacatcctggccggagctgaggaagagcagaaagtggag
ttctcttctggtgatcaatcaaacgttgacaaagaaacttctactgcggtgcacaaagat
gaagtgactgagccaccatctgagaaaagcagccaaaatgcagaaacgtcagggaatgcc
cagagtgaagcttctggtccaacaacgaaagaagattctgctgccccaacaaaggatgac
gcgcagacagaggtagcccaccttgaacaaggggattcatcagagctctcaaccgaagag
tcaagtgtagcttctgaaaaaggagacgagagcaagcagatgtcctccgagcctccagct
cccctggagaacagcgtgctgggcggagcttccattttcaacgaggacttggtcgacgtg
tcgtccgttagcgaccagatcaacccgagcgatgtggatgatagccaagaagagtcgtct
tatgcttcagctgctgcgggagaagaaggagagcctgtgaaaaaagcggaagatgaacat
gaaggggatggaagcaaaacaaaagatctcagagaacaggagccaaaaacggaagaaggc
aaacaggaaacagggacggtgagaagagaagaacaagagaaggactctgtcgagaaccag
gtgccttgctcggaaagtcccgctccagaaactgaagtagctgaccaaagtgtcaaggaa
ctcaccaaagaaaatgttagtggtccggagtcttcctctaagtcagaaggtgctgcttca
gaccgacaggaggcagcagctccagaggcaaccccacaaagccagccttcagagtccagt
atgtccgccacagaggagacccctccggatgcccctgacaccagcaccccaggctccagc
accagcaagactccagatcctgccagaaagaccaaagagaccaaaatcgcccggctagac
gtggcaaatgttgccgtggacacagagagacttgaactcaaggagacctctattacagaa
tcaagccaaggccaaaccacaggcgcagcaggggaagcaggaagtccaccaggccggcca
gaagacagcagcacctcggctcctcgctccaccatgttccgtatcccagagttccgctgg
tcccacatgcatcagcgcctcctcaccgacctactcttctctattgagacagacgttcag
gcgtggaggagtcactccacaaaaacggtcctggactttgtgaacagcagcgagaacacc
gtgtttgtccacaacagcatccacctggtgtcccaggtggtggacaacctgatcatggcc
tgcggaggcatcctgcctctgctgtccgctgctacgtctgcctctcatgagctggagaac
atcgagccgtcccagggtctgccggtggaggcctccgtcaccttcctccagcgcctcatc
aacctggcggacgttctcatcttcgccagctctctgaacttcaccgagatcgaagcggag
aagaacatgtcgtcggggggaatcctgcgccagtgcctccgcctcgtatgtgctatagca
gtgagaaactgtctggagtgccaacaagcccagtttaaaggggcagaaggtccaaccaga
agctacaccgtcatgcccagcaccgcagtgggaacggccatgtctgcgtctgctcagagt
cccgtcgacgcggtgacagggggaatgtccaccgtcagagacctggaccggctcctccag
gacatggacatcaaccgcctcagggccgtcgtgttcagagacatcgaggacagtaagcag
gctcagtttctggcgctggctgtggtctacttcatctcagtcctcatggtgtcaaagtat
cgggacatcctggagccccacaacgacaggaaaccccctctccgctcccagtctaccagg
agtacagacagcagcgccgaggtggagaacggcgtctctttaagacgctacgactcgggc
atcggcgatgaccacacgtcggctgtggccagcgaggccgacctggcttcctccggcggc
ccggacgccgtctcggaagccctgtccactctgtcctccgaggtccgcggcccgacctcc
gccgactccaagtccaagaacgtgaaggacatcctccgcagcctggtgagctcgccggcc
gaagacgtcatggtggaccccagtctgctgcccctgtcctttatgggacccgtgacccac
ttggaccggcgatcatcgctccagtttcgctcattcgatagaagcgtcgtcgtcgcaccg
aggcaagccggcgtgttgccatctcaagtgtctcccgcccccgcccagacctccgccgcc
gcttcagtctccgccgggacgccggtggacggcgtggccgtggtgtcctcaggcgacgcc
tcccaggtcctctctgtggacgctgcagattcaggcggccaggttccagccagctccagc
ctgccatctgtccccccactctcccctgtgacccagaacacagcccccaacatgagcatc
tcggagcgcctggagcacgcgttggaaaaggccgctccgcttctgagggagatctttgtg
gacttcgccccgttcctgtcccggaccctgctgggcagccacggacaggagctgctcatc
gagggcaccagtctggtgtgcatgaagtccagcagctcggtggtggagctcgtcatgctg
ctgtgttctcaggaatggcagaactccatccagaagaacgcaggactggccttcatcgag
ttggtcaacgaaggcaggcttctcagccacacgatgaaggaccatctggttcgcgtagcc
aacgaggccgagttcatcctgagcagacagcgggccgaagacatccataaacatgcagaa
tttgagtcgaactgcgcccagtatgcggcagagaagcgagacgaggagaagatgtgcgac
cacttgatcagagccgccaagttccgcgaccacatgacctccacccagctcatccagaag
atcgtcaacattctgactgacaaacacggagcctggggaagttcgtccgtcagccggccg
agggagttctggcgcctggactactgggaggacgatttaaggagacgacggcgcttcgtc
aggaacccgtttggatccagtcactcggaagcggcgctcaaagcggccgccgaacacgcg
tccgaggacgacatcctgaagcagtccatcaggagccaggctctggccaatcagaacacg
gagagcgaggcgtccctggacggggacgacgacactctgtcctccctggaggacaaagac
ctggagaaccaaacaggcccggtcaacctgagcaccagcgcccagctcgtcgctccggct
gcggtggtgaaaggcaccctgtcggtcaccgcctccgagctcttcttcgaggtggatgag
gacgatccgagctacaaggccgtcgatccaaagatattgtcctacactgaaggtcttcat
ggaaaatggctgttcacagagatccgggccgtgttttccagacgctaccttctgcagaac
acagctctagaagtgttcatggcaaacagaacggccgtcatgttcaacttcccagatgca
gccacggtaaagaaggtggtccacagccttcctcgtgtcggattgggcacaaacttcggt
cttcctcagatcagacgtatttctctggccacacccaggcagctcttcaagacgtccaac
atgacgcagcgctggcaacggcgcgagatatccaacttcgagtacctgatgttcctcaac
accatcgccggtcgcacctataacgacctgaaccagtacccggttttcccctggatcatc
accaactatgagtcaccagaactggacctgactctacctagcaactacagagacctgtct
aagcccattggagcgctgaaccccaagagggcggcgttcttttcagacagatacgagtcc
tgggaggacgaccaggtgcccaagttccactacgggacccactactccacctccagcttc
accctgatgtggctgctccgcatcgaaccctttaccacgttcttccttaacttccaagga
gggaagttcgaccacgccgaccgcaccttctcctccgtgttcagggcctggaggaactgc
cagagggacacatctgacgttaaggagctgatcccagagttcttctacctgcctgagatg
ttcgtcaatgccaacaactacaacctgggagtgatggaggacggcaccgttgtctctgac
gtggatcttccgccttgggccaaaagctcggaggagtttgttcgcatcaatcggcaggct
ctggagagcgagttcgtgtcctgccagctccaccagtggattgacctgattttcggctac
aagcagcagggacccgaagctgccagggccctcaatgttttctactatctgacatatgaa
ggcgcggtcaacctgagctccattaacgaccccatgctcagagaggccgtggagtctcag
atcaggagttttggacagactccttctcagctgctcattgagccacacccgcctcgaagt
tcagccatgcaggtgtatcttctcctgcagacgccgctgatgttcacggagcagatgcag
caggacgtcatcatggtgctgaagttcccgtccaattctcctgtgacgcacgtggcagcc
aacacccagccgggcctcgcgtcgcccgccatcataaccgtcaccgccaaccgcctcttc
tctgtcaacaaatggcacggcttggcaggtcatcagaacgccggggagcagcagtaccaa
cttcctgtggaaattgaccctttgatagccagcaacgtgggctgtcaccggcgtcagatc
tcagacctcctggatcagagcatccagatcagctcgcagtgtttcgccatcaccgccgac
aaccgcttcatcctgctgtgtggcttctgggacaagagcttccgggtctactccaccgac
acagggaagctgacgcagatcgtgttcggacaccgggacgtggtgacgtgcctcgcccgc
tccgagtcgtacatcggcggggactgctacgtcctgacgggctccagagacgccaccctg
ctgctgtggtactggaacggaaagctcagcagcatcggggagagcccaggcacagagttt
accacaccgagggccatcctgacgggacacgactgtgaggtgacgtctgtcagcgtttgt
gctgagttgggtctcgtcatcagcggctgcaaggagggtccttgcctggtccattccatg
aacggagacctgctccggaccctggagggcccggagagctgcctgcggccccggctcatc
cagtcctccagcgagggccactgcatgatctactatgacaagggacacttctgtctcttc
agcgtcaacggcaagctgctgctccacatggaggtgcaggacaacatcaaggccatgctg
ctgagtcgggacggtcagtatttgctgacgggtggagatggtggagtcgtgtccgtctgg
caggtgtctgacctcaaacagctcttcacctttcctggctgtgacgcagggatccgctcc
atggcaatgtcacatgatcaacggtgcatcatcactggcatggcgtctggcagcatcgtc
ctcttctacaacgacttcaacaggtggcatcacgagtaccagaccagatactga
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integrated database retrieval system
