Xiphophorus hellerii (green swordtail): 116720672
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Entry
116720672 CDS
T07363
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116720672 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116720672 (exosc1)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116720672 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
116720672 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
116720672
NCBI-ProteinID:
XP_032419951
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Position
5:complement(22805715..22814581)
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AA seq
204 aa
AA seq
DB search
MRRLSALPENMSPLRLCVPGEKLCSVEDCNQGTGVYQRHGYIYSSLAGYVMRKNEGEELP
VISVVRETEALLLPDVGAIVTCKVTGINSRFAKVHILYVGSTPLKDRFRGTIRKEDVRES
EKDKVDIYKSFRPGDIVLAKVISLGDVQSTYLLTTAENELGVVVAHSEAGAQMIPISWRE
MQCPQTNAKEFRKVARVQPEYLEA
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgaggcggctctctgctcttcccgaaaacatgtcgcccctgagattgtgtgtcccaggt
gagaaactgtgcagcgtagaagactgtaatcaaggcactggagtgtatcagcggcatggc
tacatctactcctcccttgctggctacgtaatgaggaagaacgagggagaggagctaccg
gtgatctcagtggtgagggaaactgaagccctgctgctgccagatgttggagccatcgtc
acctgcaaggtgactggcatcaactccaggtttgccaaggtccatatcctctacgtgggg
tccacaccgctgaaagaccgcttcagagggaccatcagaaaggaagacgtgagagagtcg
gagaaagacaaggtggacatatacaaaagcttcagacctggtgacatcgtcctggcaaaa
gttatttcgctcggggacgttcagtctacctacctgttgacaacagctgagaacgaactg
ggcgtggtggtggctcacagcgaagcaggtgcccagatgattcccatcagctggcgtgag
atgcagtgcccgcagaccaacgccaaggagtttcgtaaagtggcccgagttcagcccgag
tatctggaggcctga
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