Xiphophorus hellerii (green swordtail): 116721218
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Entry
116721218 CDS
T07363
Symbol
gtf2b
Name
(RefSeq) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116721218 (gtf2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116721218 (gtf2b)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
116721218 (gtf2b)
Prokaryotic type
Archaeal type
TFB
116721218 (gtf2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Cyclin_C
RB_B
BRF2-like_C_cyclin_rpt
Sigma70_r4
KIF9
Motif
Other DBs
NCBI-GeneID:
116721218
NCBI-ProteinID:
XP_032420695
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All DBs
Position
6:3372702..3380345
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AA seq
318 aa
AA seq
DB search
MASTSRGESLALPKVQCPNHPDALLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNE
KALKDPSRVGDAQNPLLNGGDLTTMISRGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAF
KEISTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK
EICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATFIARK
AVELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAAE
LFPPDFKFDTPVDKLPQL
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacgagtcgtggagaatctctggccttacccaaagttcagtgtcccaaccat
cctgatgcgttactggtggaggactacagggcaggcgacatgatttgtcctgaatgtggc
cttgttgttggtgaccgtgtgatcgacgtgggctctgagtggaggacgttttctaatgag
aaggctctcaaagatccatccagagtgggagacgctcagaaccccctgctcaacggagga
gacctgaccaccatgatcagcaggggaacgggcgcggccagcttcgatgagttcggcaac
tcaaagtaccagaaccggcggaccatgagcagctctgaccgggccatgctgaacgccttc
aaagagatcagcaccatggcggatcgcatcaacctgccgagaaacatcgtagacagaaca
aacaacctgttcaagcaggtttatgagcagaagagtctgaagggtcgagccaacgatgcc
atcgcctcagcctgcctctacatcgcctgcaggcaagagggtgtaccaaggacatttaaa
gagatctgcgccgtctccaggatctcaaagaaggagatcggcaggtgcttcaagctgatc
ctgaaggctctggagaccagcgtggacctcatcaccacgggagacttcatgtcccgcttc
tgctccaacctgggcctgccgaagcaggtgcaaatggccgccaccttcatcgccaggaaa
gccgtggagctggacctggtgcccggcaggagccccatctcggtggccgctgcagccatc
tacatggcctcccaggcctccgctgagaagaagacccagaaagaaatcggcgatattgct
ggcgttgccgacgtcaccatcagacagtcctaccgactcatctatccacgcgcagcagaa
cttttccctccagactttaagtttgacacgcctgttgataaactgcctcaactgtga
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