Xiphophorus hellerii (green swordtail): 116721274
Help
Entry
116721274 CDS
T07363
Symbol
rc3h1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116721274 (rc3h1)
04121 Ubiquitin system [BR:
xhe04121
]
116721274 (rc3h1)
Transcription factors [BR:
xhe03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
116721274 (rc3h1)
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116721274 (rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
Prok-RING_4
zf-C3HC4_2
zf-CCCH_4
FYVE
zf-CCCH_UNK
zf_CCCH_4
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
116721274
NCBI-ProteinID:
XP_032420786
LinkDB
All DBs
Position
6:complement(14408779..14425791)
Genome browser
AA seq
1128 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDTQNYEVARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRMAGRSGVVFPDDGLAPDVTVTRKHSPVT
NGSGAPNLPQLVARGTDTVPYELLSKPAKLDGGSPSVPGSPPDVLDPMPKSGIPLPPHGM
AHPRITADHLTGVKHIPGVARGSPVYSQPQPRDVYDIRPPPASQYEPPQYPAGYPYQQPT
QYVREYIRNAPPPSESGPPYHDPYSGYSAPDRPYPSQHSGPPFPYSHPSHYDRGHHGAYG
APPPPPQPYPSQRDPLVKMSPAPLDVPPPSAGQANSLYHQEASSRDRYAPDGYYPPGSQP
PPMRTYVRGSQYSGSQPSLDYLHRRRQELLSQLAERKVISPPPFAASPTLSHPFPSDYPP
EYGDESSKTMKCRESDYTGQYSPWSCETIGSYINTKDAKPKNVMAPGTMEMMNVDDKGQR
EPSLEAPRRGTEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTGPVQAMASALQNPNS
KHMTMPDYSYGSHGGWAGASYPSHQTASSSQGHFERLPMTTPDREQLKIELQQVNQQITQ
QTQMHNIEAASNSLLLQREASALVVQPVQPSQGPAAVVPQQPQPKWPVGGAGVSAVSNEQ
LSLELHQVEREIGKRTREMALQENQVAHDVQQYKMQSAENGQPEHENQLEELSLALGEVS
NGSSSLQENAVGGSMLSLTNKTAALSMCSDPVVAGSEMQKNGVVHSCS
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaagcgccacaatggacagagtttctgctgtgcccaatctgcacacagacc
tttgaagagactgttcgccggcccatcagcttgggctgtggacatactgtgtgcaagatg
tgcctgaacaagttgcaccgcaaggcctgtccctttgaccagacggccatcagcacagac
atcgagcagttacctgtgaacacagccctgttgcagctggtgggaggccaggttcccaag
gctcagccggttgccttgattacaagtccagaggacactcagaactatgaggtggctaga
cagtgtgtggaggagctggccctctacctcaaacccctcagcaacacccgaggtgtgggt
ctgagcagcacagcccaaagcatgctgagtcgacccatgcagaggaaattggtaactctg
gtccactgccagctggtggaggaggagggacgggtcagagccatgagagcggcgcgctct
cttggcgagcgaacggtcaccgaactcatcttgcagcaccagaatccccagcagctgtcc
tctaatctgtgggccgctgttcgtgcacggggctgtcagtttcttggcccagcaatgcag
gaggaagccctcaaattggttctcctcgctttggaagatggttctgctttgtccagaaaa
gtgttggttctttttgtagtccaaaggcttgaaccacgcttccctcaggcctctaaaacc
agcataggccatgtggtacagctgctttatagagcttcctgcttcaaggttaccaaacgg
gatgaagattcatctctcatgcagctgaaagaggagtttcgtacgtacgaggctctgcgg
cgggagcatgactctcagattgttcagatcgccatggaaggagggttgcgcatcgcacct
gaccagtggtcttctttgttgtatggagatcagtcacacaagtcacatatgcagtctatc
atagataagctgcagaccccggcatcttttgctcaaagtgtgcaggagctgacaattgca
ctgcaaaggactggggacccagccaatctcaacagactacgaccccacttagagctgctg
gcaaacatcgatcccagtcccgatgctcctccaccaacatgggagcagcttgagaagggg
ttggtagcggtgaaaacagtggtccatggcctggttgatttcattcaaaaccacagcaaa
aaaggagctgatcctcaacagcctcctcagcacagcaaatataaaacatacatgtgtcgt
gacatgaagcagaaaggcggctgtcctcgtggcgccagctgtacctttgcccactctcag
gaagaactagagaagtatcgtaagatgaataagcgcatggcaggtcgctcaggagtggtg
tttccagacgatggccttgctcctgatgtaacagtgacccgaaagcattcaccagtcacc
aatggcagcggcgcgccaaacttgccccaattagtcgcccgcggcaccgacacagtccca
tatgagttgctgtctaaacctgccaagctggatggaggaagtccaagtgttcctggatcg
ccaccagatgtcctggaccccatgcccaaaagcggtataccactgccacctcatggaatg
gctcaccccaggataacagcagatcacctcacaggggtcaagcatatccctggggttgcc
aggggttctccagtttattctcaaccacaaccccgtgatgtatatgacattcgtccccca
cctgcctctcagtatgagccaccacagtacccagcaggttatccctaccaacagccaaca
cagtatgtccgggaatacatccgtaacgcccctccgccgagtgagtcaggacccccttac
catgacccttacagcggctacagcgctccggaccgcccctacccctcccagcactctggc
ccaccttttccctactcccacccatctcactatgacagaggtcaccacggtgcctacggc
gcccctcctccgccccctcagccttatccgtctcagagagatccccttgtcaaaatgagt
ccggctcccctcgatgttccgcccccctcagcagggcaggccaactccctctaccaccaa
gaagcgagttcccgggacagatatgccccagacggctactatcctccgggttcccagcct
ccgcctatgaggacttacgtcagggggtcacaatacagcggttcacagcccagcctagac
tatctccaccgacgacggcaggaactgttatctcagctggcagaaaggaaggtcatctct
cctccaccatttgccgcctcccccactctttcacatcccttccccagcgactatccccct
gagtatggcgacgagagctccaaaacgatgaaatgcagagagtccgactacacagggcag
tactcaccctggtcctgcgaaaccattggctcttatattaacacaaaggatgccaaaccc
aagaacgttatggctcctggtaccatggagatgatgaatgtggacgataaagggcagagg
gagccatcattggaggcccctcgcaggggaacagaagtgaaagatgatgaccctattata
ccttttggcccccagcccactgtatcacgctttggcgccatctcccgcacttcaaagact
ggctatcagaccactggcccagtgcaagctatggcttccgctctccagaaccccaactct
aaacacatgaccatgcctgattactcatatggaagtcatggaggatgggctggagcttca
tacccctcccaccagactgcctcctcctctcagggacactttgagcgccttcccatgaca
accccagatagagaacagttaaagattgagctgcagcaggtcaatcagcagatcactcaa
cagactcagatgcacaacatagaggccgccagtaactctttgctcctgcagagggaggcc
agcgcattggttgtccagcctgtgcaacccagccagggcccagcggcagtggttccacag
caaccgcagcccaagtggccagtagggggtgccggtgtgtcagctgtctccaatgagcag
ttaagcttggagctccaccaggtggagagagaaattggcaagaggacccgagagatggct
ttgcaggaaaaccaagtagctcatgatgtccaacagtacaaaatgcagtctgcagagaat
ggacaaccagagcacgagaaccagctggaagaactctctctggctctcggcgaagtgtcc
aacggctccagcagtctgcaagaaaatgcagtgggcgggtccatgctgtcactgaccaat
aagacggctgcattgagcatgtgttctgatccagttgttgctggttcagagatgcagaag
aatggtgttgtccactcctgctcatag
DBGET
integrated database retrieval system
