Xiphophorus hellerii (green swordtail): 116721348
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Entry
116721348 CDS
T07363
Name
(RefSeq) nucleoprotein TPR-like isoform X1
KO
K09291
nucleoprotein TPR
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116721348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116721348
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116721348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
GAS
Motif
Other DBs
NCBI-GeneID:
116721348
NCBI-ProteinID:
XP_032420900
LinkDB
All DBs
Position
6:10986202..11010021
Genome browser
AA seq
2477 aa
AA seq
DB search
MAVVLLQALERTELNKLPKGVQNKLEKFVADLQNANEALKTQHERFKADSEQRYFDFEKQ
LTESQEQILSATNDLQILKEENKKLNEELSSLKGIEDETSEEKQPQQQTKAKYEIEAEKR
ELERLLEKRTQEVENLTEDMKRLNEKLTDTNKLKMELQLKLDEIQSSTASVQHREKRMEQ
EKELLEKKVDWLTAELSTKTEELLNTNREKGKEILELQGSLQSSNEQVSRLESQLTSLKE
LSESQSKRAEDLNNKLKQAKDEQVAMEEKYRVELNAHVKLSSLYKGAATDMEAKNQELSR
AVEELSKLVKETGEANKGLEKKVSDAEEQKVRVEAELREKIKKMEKELENATMKAAGKNC
CGSSLTEEQLDSMCPSATAIAAIVKPGMKFFDLYNAYAECQTHLQLEKQETRRVSKVLDE
IVQEVESKAPVLKRQREEYESMQRSMASLCNKLEQARTEIYSLQKEKDEAKQSFDAMERE
KLKAERQLEDSSAQLCNLLVELEEARGNRVSKDDGSSSDISSTSEVNSSSLLSFRSVMEL
QRQNQSLLGRLRELEEEKSRERSREDNARITELESVVDKLQKEVEQLREQRNQQKQLADS
NARQRDMFKALLTQSTGFSLPPQGQELILRPSAPATRSTPQRAAAAESSQTIHTKAALKQ
LNDSFALYKKEKAENDRMLNETNDRLQKQLAELRSSHAKLTSQLDFSNKRYEILQETVSA
YRREISALQKSNQTMAATVQRHEHNIHTMVQDLRKANEKLALEQVRVENLTKERDMLRQA
ECRLDKEKEAVLAEQRNQNLLLTNLKTIQLAMDRTETETRQRLNNKIEQLEAELASIKTK
LEEEVAQRHALGRTMDAQLLEAKKQLETQNILLQKTKELLRGSEQQVTTLKAQLVSVSSS
EATTASGITTTPIIRSAALRAPLRVHSPVPAASPQPGQSEQELSDLKAQLRSAEEQNAEL
AEQLKNANATVEQYRSVVLTLEDSLKKEKESRSPLEVRLKQSEDVQKQLEKKMLEVEKLK
QQELEERKKAVDAVEKQVLELQRSLKASQTEQQDALERAAAAVTQEQKATQNSLLQTKLA
GEAQAKYERELMLHAADVEALQQLKKTSQHEAARKREIEEELKKATSLLQVKTNVWITTE
KRLKEELSSLKSRFEELGKQNSLLLQQMDEMAARSRQQQQQQQQQQQQLDLSFSEDGKTT
EQILEILRFVRREKEIAVAQSEASEGEALRYKQQVEHKDRELKELQEALNGERERMQLTS
KTLCEQQEQLKKMESISALQENNRMLKLDRDKLELELQQAQAKVTKLQSDIAPLHNSLSI
LSEKNGSLQADKRLLEDDLKRWKAKVQHLVSQQKEGDAEEKQKITAEKEAQQKRIAQLIE
EAAKLRTELARSNASSNSAQAQLQGLKDSVVRLTSEKDSFKKDLETKNNEILEKNRTITQ
VKKIGRRYKTQYEELKAQNDKTAGETSGKNDLKKTQDELHTLKEEAQKRQAEAQKSQQDL
EAAQKEHQQSKEKLQELQTQLTQSQNELTQAQSQLSQVQTQLQQNQSQLALKQKVFDQFK
NQLQQSQIKLKSVQSLAQARQNQMQQMQEELQQAKEAVQQNAAKEKELQQNHSQEVSNLK
TSLSRAENKVAELQIQLNNLQKTVSEREAEIMKLQEQLIEVKRAHEASQAALTSQSSQSI
QANDSTAAGDFSQTQHDELTKLKQELSESKNREDQLKLQMAEKEEKTKKAILGAKLKIGQ
VNSAKEQLSQENEELKQSKEELEVRMNALKSQYEGRLLRMDRELRELRETQAHSDGREET
QDQGVAKLDQPRSSDQRQISLKSPAQDRGSLSTSEPPTANIRPTPSTQSPSNKPSPSTGS
KATPRASIRPMVTPAPVPIPTPTATVMPTTQTESQEVLISTGASVHSTSSSLMNPLASLT
QPTSTQATAFVQPTQQQAANQDAGSSIEAECPSTSSSSSSCMPSTAKTGSKRSRETEEEE
EESRPESSQTPPNTKKLRLKPTIALQMEGDEELEGELGDMGEQQVSPDDSRELPEEGFQV
FSEEDEGVSQSVPSDQGSQGSALIRDVIVIDTDSESRESKEGDQRVEEEDEDEEEDEEEA
EGEQEEDDEEDDDGAADSGMRGGEEHNEESQEAEDEREEAAPSGGSNAEENVSGAPTSSQ
RPADPSQSGEGTSCGADLGSARDYLHHPPTCSTAHSPCSSSLMPRLSQPRRPSPRLFIQA
PAPELGPPHTQRQPSQLRRPSSGRGPQLTPGLASMPFFDDDDRMVPSTPTLVVPHRTDGF
AEAIHSPQVAGLSTRFRFGPPEDLLQQASASHSDLGQLASQGGLGMYESPLFLAAHDEDG
GGRSVPTTPLQVAAPVTVFTENMPSDSGDNLASQSVPMVTASTGMAAAADDGDEVFMEHE
GEGPDIDVSLDSQMLLESTGQQRDDASLPSTSQDPDTSSDSQPRSVTSQRQMSILSGRGR
FLSRTGTFPRAGRGGAT
NT seq
7434 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgtcttactgcaggccctagagcggacagagttgaacaaactcccgaaaggc
gttcaaaacaagctggagaagtttgtagcagacctgcagaatgctaacgaggcgctaaag
acgcagcatgagcggttcaaagcagacagtgagcaacgatactttgactttgagaaacaa
ctgacagagagccaagaacagatcctttctgccacaaacgacctgcagatcctgaaagag
gagaataaaaaactaaatgaagagctgagctctttgaaaggaatagaggatgagaccagt
gaagaaaaacaaccacaacagcaaaccaaggcaaagtatgaaattgaggcggagaagaga
gaactggagaggctgctggagaagagaacgcaggaggtggagaacctgacagaggacatg
aaacgtctgaatgagaagctgaccgacaccaacaaactaaagatggagctccagctaaag
ctggatgaaatacagtcatcgacagcctctgtgcagcaccgagagaaacgaatggagcag
gagaaagagctgctggagaagaaagttgattggttaactgcagagctgtcgaccaaaact
gaggagttactgaacaccaacagagagaaggggaaggagatactggagctgcagggcagt
ctgcagagcagcaacgagcaggtgagcagacttgagagtcagctcacttctctgaaagaa
ctcagcgaaagccaaagtaaaagagctgaagatctcaataacaaactgaaacaggcaaag
gatgaacaggttgctatggaggagaaataccgtgttgagctcaacgctcatgtcaagtta
tcttcactctacaagggtgcagcgactgacatggaggcaaagaaccaggagctgagcaga
gcagtggaggagcttagcaagctggtcaaagagacaggagaagctaacaagggtctggag
aagaaagtttccgatgctgaagagcaaaaggtacgagttgaggcagaacttagagagaag
ataaagaaaatggagaaggagctggaaaatgcaacgatgaaggctgccggaaaaaactgc
tgcgggtcttctttgacagaagaacagctggactccatgtgtccatcagcgactgccatc
gctgcaattgtcaagcctggcatgaaatttttcgatctatataatgcatacgcagagtgt
cagacccatctgcagctcgagaagcaggagacgaggagggtgagcaaagtccttgatgaa
atagtgcaggaggtggagtccaaagctcctgtgctcaagcgacagagagaggagtatgag
agcatgcagaggtcaatggcttccctatgcaacaaactggaacaagctcgaacggagatc
tacagtctgcaaaaagagaaagatgaagccaagcagagcttcgacgccatggagagagag
aaactaaaggctgagaggcaactagaggattcatctgcgcagctgtgcaatctcctggtc
gagttggaagaagcgcgcggcaatcgggtgtccaaagacgacggcagctcctccgatatt
tccagcacctcggaggtgaacagctcgagcctgctgtcgttccgcagcgtgatggagctc
cagagacagaaccaaagcctgctgggaagactacgggagctggaggaggagaagagcagg
gagcggtccagggaggataacgcacgcataacggagttggagtctgttgtggataaacta
cagaaggaggtggagcagctgagagagcagaggaaccagcagaaacagctggccgactcc
aacgctaggcagagagacatgttcaaggctctgctgactcagagcaccggcttcagcttg
cctcctcaaggtcaggagttgattctccgtccttccgccccagctactcgctccactcct
cagagagccgctgcggcagagtccagccagaccattcacacaaaagctgctctaaaacag
ctcaacgactcttttgccttgtataagaaagagaaggctgagaatgaccggatgctgaat
gaaactaacgaccgattgcagaagcagctggcggagctccgctccagccacgccaaactc
acttctcagctggacttcagtaacaagaggtatgagattcttcaggaaactgtgtcagct
taccgcagagagatcagcgcactgcagaagagtaaccaaacaatggccgccacagttcag
cggcacgagcacaacatccatacgatggtccaggacctgaggaaggccaatgaaaaactg
gcactggaacaggtgcgtgtggagaacctgactaaagagagagacatgttgcggcaggca
gagtgtcggctcgataaagaaaaggaagctgttctggctgagcaacgcaaccagaacctt
ctgctgaccaacctgaagaccatacagttggccatggaccgtacagagacggagactcgc
cagcgacttaacaacaaaatagaacagctggaggctgaactggcctcaataaagaccaag
ctggaggaagaagttgctcagcgacacgccctcggacgaaccatggatgcccagttatta
gaagcaaagaagcagctggagacacaaaacatcttgctgcagaagaccaaggagcttctg
cgtggctctgagcagcaggtgaccacgctgaaagctcagctggtgtctgtgtcttcctcc
gaagccactaccgcctccggcatcacaaccaccccaatcatcagatctgctgccctgcgg
gctccactcagagtacactccccagtgccagcagcctctccgcagcccggccaatcagag
caggagctttcagacctgaaggctcaactacgaagtgccgaggaacaaaacgctgagctg
gcggagcagctgaagaacgctaatgccacggttgaacagtaccgatctgtagttctaact
ctggaagacagcttgaagaaagaaaaggagtcacgctctcctctagaggtccgactgaag
cagtcggaggatgtgcagaagcagctggagaaaaagatgctagaggtggagaagctgaag
cagcaggaattggaggagaggaagaaggctgtggatgcagtggagaaacaagtgttggag
ctgcagcgcagtctgaaggccagtcagacagaacagcaggacgccctggagagagctgcc
gccgccgtcacacaggaacagaaagccacacagaacagcctgctgcagactaagctagct
ggcgaggcgcaggccaagtacgaacgagagctgatgcttcatgctgccgatgtggaggct
ctgcagcagctgaagaaaacatcccagcacgaagcagcacgcaagagggagatcgaagaa
gaactgaagaaagctacttccctcctacaagtgaaaactaatgtctggattacaacggag
aagcgactaaaggaagagctatccagtctgaaatctcgctttgaagaactgggaaaacaa
aatagtctcctgctccagcagatggatgaaatggctgccaggagtcgccaacagcagcag
cagcaacagcagcagcagcagcaactggacctttcatttagtgaggacggaaaaaccact
gaacagattctggaaatccttaggtttgtgcgtcgcgagaaggagattgctgttgctcag
tccgaggcgtctgaaggagaggctcttcgctacaaacagcaagtcgagcacaaagacaga
gaactgaaggagctgcaggaagctctaaatggagagagagagaggatgcaattgaccagc
aagactctgtgtgagcagcaggaacagctgaagaagatggagagcatcagcgctctgcaa
gaaaacaacaggatgctgaaactggaccgagataagctggaactggagcttcagcaggct
caggctaaagtaacaaagctacagtcagacatcgcccccctgcataactctctgtctata
ctgtcggagaaaaatggttccctgcaggctgataagaggctgctggaagacgacctcaaa
cgctggaaggctaaagttcaacacctggtcagccaacaaaaagagggagacgccgaggaa
aaacagaaaatcacagctgaaaaagaggcacaacagaaacgcatagcgcagctaattgaa
gaggcggctaagcttaggactgagctggccagatccaacgccagcagcaattcagctcaa
gcccagcttcaaggtctcaaagactctgtggtccgcttgacatcggaaaaagactctttt
aagaaagacctggaaaccaaaaacaatgaaattctggagaagaacaggaccatcactcag
gtgaagaagattggacgccgctacaagactcagtacgaggagctgaaagcccagaatgat
aagacggctggggaaacttctggaaagaacgacctgaagaagacccaagatgaactacat
actctgaaggaggaagctcagaaaaggcaggcagaggctcagaagtctcagcaggacttg
gaggcggctcagaaggaacatcagcagagcaaagaaaaactccaggagctccaaacccag
ctcacacagagccagaacgagctgacacaggcccagtcccagctgagtcaggtccagacc
cagttgcagcagaatcagagccagctggccctgaagcagaaagtatttgaccaattcaag
aaccaactccagcagtcacagatcaagctaaaatcggtccagtctctggcccaggccagg
cagaaccagatgcagcagatgcaggaggagcttcagcaggctaaagaggcagtccagcag
aacgctgctaaagagaaggagctccagcagaaccacagtcaggaggtcagcaacctgaag
acctctctcagtcgagccgaaaacaaggtggcagagcttcaaatccaactgaacaacctg
cagaagaccgtttctgagcgtgaagcagagattatgaaactgcaggagcagctaattgaa
gttaagcgtgctcatgaagctagccaagcagcactgaccagccagagttcccagtctatc
caggccaatgactccacagctgctggagatttcagtcagacacagcatgatgagctgacc
aagctcaaacaggagctttctgagagtaagaacagagaagatcagctcaaactgcagatg
gctgagaaagaggagaagaccaaaaaggccattctgggagccaaattaaaaatcggccaa
gtaaacagtgccaaagagcagctcagtcaggagaacgaggagctgaagcagagcaaagag
gagctggaggtcaggatgaacgccctcaagtctcagtacgaaggaagacttcttcgaatg
gacagagagctgagagaactgagagagacacaagctcactctgacgggagggaggaaact
caggaccagggcgtagccaagttggatcagcccagatcttcagaccagagacaaatttct
ttgaaaagtcctgctcaagacaggggaagcctgagcacctctgagccacccaccgccaac
attcggcccactccaagcactcagtcacccagcaacaagccgagtccgtccaccggcagc
aaggccacccctcgcgccagcatcaggcccatggttacacctgcacctgttcccatccca
acacccacagccacagtgatgcccactacacagacggagagtcaggaggttctcatctct
acaggagcttctgttcactccactagctcttccctcatgaatcctctggcctccttaact
cagccaaccagcactcaggccacggcctttgttcagcccacccaacagcaggcagccaat
caggacgcaggctccagcatagaggcagaatgtccatccacatcctcctcatcctcctcc
tgcatgccttcaacagctaaaactggctcaaagcgaagcagagaaaccgaagaggaggaa
gaggaaagtcgacctgagagttcccaaacacctccgaacactaaaaaactgcgactgaaa
ccaacaatcgctctgcagatggagggtgatgaagagctggaaggagagctgggggacatg
ggagagcaacaggtttcgcctgatgacagtcgggagctcccagaggaaggcttccaggtg
ttttctgaggaggacgaaggagtttcccagtccgtcccgtctgaccagggctcccagggc
tcggctttaattcgagacgtcattgtgatcgacaccgacagcgagagcagggagagcaaa
gagggggaccagagagtggaagaagaggatgaagacgaagaagaggatgaagaggaagca
gaaggagagcaggaagaagatgacgaagaagatgatgatggagctgctgacagcgggatg
agaggaggagaggagcacaacgaggagagtcaggaggctgaagatgagagagaggaagcc
gctccttcagggggttccaacgctgaggagaatgtgagtggcgcccccaccagctcccag
cgccctgctgacccctcacagagcggagaaggcaccagttgcggagcagatctaggatct
gctagggattacctccaccaccctccaacctgctccactgcacattccccctgctcctcc
tccctgatgccccgcctctcccagccccgcaggccgtcaccccggctcttcatccaagcg
ccggcacctgaactgggacccccacacacacagagacaaccgtctcaacttcgtagacca
tcatcgggtcgtggacctcaactaactcctggattagcctccatgccgttctttgatgac
gatgacagaatggttcccagtactcccactctggtggtcccgcaccgcaccgatggtttt
gccgaggctatacattctccacaggtagcaggcctctccaccagattcaggttcgggcct
ccggaagatttgctgcagcaggcatcagcttcacattcggacctgggacagctggcgtct
caaggaggcttggggatgtatgaatctccgctcttcctggctgctcatgatgaagatggc
ggagggaggagtgtccctaccacacctttacaggtggctgcaccagtgacggtctttaca
gagaatatgccctctgacagtggcgacaacttggcctcccagtcagttcccatggtaact
gcctcaactgggatggctgctgctgcagacgatggagatgaggttttcatggagcacgaa
ggagaaggtccagatattgacgtttctctggacagccagatgctcctggagtcaacagga
cagcaacgtgatgatgcctccctgccgtctacaagtcaagatcctgacaccagcagtgac
agtcagcctcgctcagtaacaagccagcgtcagatgagcatcctctcaggcagaggacgg
ttcctcagtcgcacaggaacatttcctcgagcaggaagaggcggagccacatga
DBGET
integrated database retrieval system
