Xiphophorus hellerii (green swordtail): 116721452
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Entry
116721452 CDS
T07363
Symbol
depdc5
Name
(RefSeq) GATOR complex protein DEPDC5 isoform X1
KO
K20404
SEA/GATOR complex protein SEA1/DEPDC5
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
116721452 (depdc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116721452 (depdc5)
Membrane trafficking [BR:
xhe04131
]
Autophagy
Other autophagy associated proteins
SEACIT/GATOR1 complex
116721452 (depdc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEPDC5_CTD
IML1
IML1_N
DEP
Motif
Other DBs
NCBI-GeneID:
116721452
NCBI-ProteinID:
XP_032421076
LinkDB
All DBs
Position
6:202153..247924
Genome browser
AA seq
1584 aa
AA seq
DB search
MRTNKSYKLVLHKKGFGGSDDELVVNPKIFPQVNLGDIIEIAHPTDDYSPLLLQVKSLKE
DLQKETISVDQTVAQAFKLRAYQDVIVNIVDPKDVTLDLVELTFKDQYIGRGDMWRLKKS
LVSTCAYVTQKVEFAGIRAQASELWVKGEKVTCGYISENTRVVFRSTSAMVYIFIQMSCE
MWDFDIYGDLYFEKAVSGFLSDLFTKWKEKNCSHEVTVVLFSRTFYNAKTLEEFPENLRG
SVRQNHEGHYYEDFYRVVAQNERRDEWTSLLVTIKKLFIQYPFLVRLKEAAGFPVGYNST
AVQGNYLEAINLSFNVFDKHYINRNFDRTGQMSVVITPGVGVFEVDRLLMILTKQRMIDN
GIGVDLVCMGEQPLHAVPLFKLHNKTTPGDSRVGDDYNLPHWINHSFYTSKSQNSCSSFT
PRIKLADRKPHAEIQKSNKDHSLCSPKDSDNSLPIQVDYDAYDAQVFRLPGPSRIQRSSN
FRIGRDKEMSGRKSWGSVDISTGIGTSSPVRSGGTEEQTSLASDDSLGPVSNMLLIPRGP
PAQYEVSSSLGYTSTRELLEKMMDSQRDSSAPGRFTVGSAESTLHIRPGGYTPQRALINP
FTPSRMPMKLTSNRRRWMHTFPVGPSGEAIQIHHQTRQNMAELQGSQQKDPTHTSAELLE
LAYHEATGRRTTSRQAGENGLYICGGTEEFTGSPGSNNSCGPLSNRSSSFQEFSSGADPT
LLLSAPPTVPSFCCTVGVDWKSLTTPACLPLTTDYFPDRQTLQNDYTEGCYDLLPHSDLE
RREDEAPVMTASQVFEEFICQRLMQGYQIIVQTNNRKPPPAVATPLGSSPLYTRGLVSLR
RAEEEETVYWLSMGRTFHKVCLRDKIITVTRYLPKYPYESAQIQYSYSLCPPHSDAQFVS
CWVEFGHERLEEYKWNYLDQYICSAGSEDFSLIDSLKFWRTRFLLLPAGGARRVADGEGH
WDVYGEGAGTGMGGCGDWVLLDGFIRFVEGLNRIRRRHRSDRIIRQKGTPMKGLQVTSPI
PPYPPEPVAPPQGKRGTSALTALLEMEQNQKTLEEQQQQSKATPAVSDLSSIAMAPTYVD
SPRKDAAFVLDFIRSPRSSYIYHSQLPVETSEPAEKGAQAGAAAGAATPAGEAANSSTDT
SGQSAAGALCLSSSSTLMEILDAIKHPTTGVQLLPEQKGLPLNCFISAEVVHWLVNNVEG
VATQGMAVDIMQKMLDEGVVAHASGDAMRTFIYGFYFYRIVGEKEGLNSQLQAAGGWSTA
AVEDFALFQRKWFEVAFVLEERRPCDLPAFLLPWLPSRPASYASRHSSFSRSFGGRSQAA
ALLAATVPEQKTVTLDVDINNRSDRTEWCSCYYHGNFSLNAAFEIKLHWMAVTAAVLFEM
VQGWHRKAASCGFLLVPVLEFPFALTSYLYGDPLRVQLFIPLHIQCLLKNGSDNLFEGFE
PETYWDRMQLFQEAILYRFGFVHDKFSPSSFNFPAENKPQYIHVTGTVFLQLPYSKRKYS
GGQTRRRRNSTTSNSQGPFGGEERVGYYWAYNTMLTKAWRTGVLGDERLADRLLRDLTDF
CSNKDNRLQIFWDSCQEKMNASAP
NT seq
4755 nt
NT seq
+upstream
nt +downstream
nt
atgaggacaaataagtcttataaactcgtactgcacaagaaaggttttggcggaagtgat
gatgagctggttgtcaacccaaaaatcttccctcaagtcaacctgggagacataattgag
attgctcaccctacagatgactacagtcctcttctgcttcaggtgaaaagcttaaaagag
gatcttcagaaagagaccatcagtgtggaccagaccgtagcacaggctttcaagcttcgt
gcctatcaggatgttattgttaatatagttgaccctaaggatgtaacactcgatctggtg
gaactgacgttcaaagatcagtacattggcagaggagacatgtggaggctaaagaagagt
ctggtgagcacatgtgcttatgtgactcagaaagtggagttcgcaggaatcagagcccag
gccagtgaattatgggtgaaaggagaaaaagtgacctgtggctacattagcgagaatacc
agagtggtttttagatcaacgtctgctatggtttacatcttcatccagatgagctgtgag
atgtgggattttgacatatatggggatctgtactttgagaaggcggtcagtggtttcctg
tctgacctgttcactaaatggaaggagaagaactgtagtcatgaagtgaccgttgtgctg
ttttcacgcacattttacaacgccaaaactttggaggagtttcctgagaatctaagagga
tccgtcagacagaatcatgagggacattattatgaagacttctacagggttgtggctcag
aatgagagacgggatgagtggacgtcactactggtcaccatcaagaaactcttcattcag
tacccttttctggttcgacttaaagaagcagctggttttcctgtgggttataattccact
gccgtgcagggaaactacctggaggccattaatctttcttttaatgtgtttgacaagcac
tacatcaaccgtaactttgaccgcactggccagatgtccgtggtcatcactccgggagta
ggagtgtttgaagttgaccgtctgcttatgatactgactaaacagcgaatgattgataat
ggtatcggtgtagacttggtgtgtatgggtgagcagccactgcacgctgtgccgttgttt
aagctgcacaacaaaacgacacctggggactcacgtgtaggagacgactacaaccttccc
cactggatcaaccacagcttctacacgtccaaaagccagaattcctgcagctcattcact
cctcggatcaaactggctgatcgcaagcctcatgctgagatccagaagagcaacaaagac
cactctctttgttctccaaaggactcagacaacagcctgcctatacaggtagattacgat
gcctatgatgctcaggtgttccggcttccaggtccatcacgaattcagaggagctccaac
ttcaggattggtcgagacaaagagatgagtgggaggaaaagctgggggtctgtggacatc
agcaccggcatcggcacgtcttctcctgtccgctcagggggaacagaggagcagacgagc
ctggcctccgatgacagcctgggtcctgtgtccaacatgctgctgatcccccgaggtcct
ccagcgcagtatgaagtcagcagctctctgggatacaccagcaccagagagttattggag
aaaatgatggactctcagcgggactccagcgcccccggcaggttcacagtgggcagtgct
gagtccaccctgcatatccgtcctggaggctacactcctcagagagcgctcataaacccc
ttcacaccatccaggatgcccatgaagctgacctccaaccggcgccgctggatgcacact
ttccctgttggtccttctggagaggcaatccagatccatcaccagaccaggcagaacatg
gcagagctacagggcagccagcagaaagatccaactcacacatctgctgagctactggag
ctggcttatcatgaagccacaggacggcgaacaacctccaggcaagcaggcgagaacggc
ctttacatttgtggaggaacggaagagttcactgggagtccagggagcaacaacagctgt
ggacctctgagcaaccgaagctcctccttccaggagttctccagtggtgctgatccgacc
ctgctgctgtctgcacccccgacagtgcccagcttctgctgcacggtgggggtggactgg
aagtccctgactaccccagcctgcctccccctcaccaccgactacttccctgaccgtcag
acgctgcagaatgactacactgaaggctgctatgacctcttgccacacagtgatctagaa
agacgcgaagatgaagctccagtgatgacggcgtctcaggtgtttgaagagtttatctgt
cagaggttaatgcagggatatcaaataatagttcaaacaaacaacagaaaacctcctcct
gcggtggccacaccccttggcagcagtcctctgtacactagaggtctggtgtctttgcgt
cgagcggaggaagaagagacggtttactggctcagcatgggccgcaccttccataaggtt
tgcctcagagacaagatcatcactgtcactcgctacctgccgaagtatccgtatgaatca
gctcagatccagtacagctacagcctgtgtcctccacactcagatgctcagtttgtgtcc
tgttgggtggagtttggacatgagcggctggaggaatacaagtggaactacctggaccag
tacatctgctcggctggctctgaggacttcagcctgatcgactcactgaagttctggcgg
acccgctttctgctgctgccagccggaggggctcggcgggtggcggacggggagggccac
tgggacgtgtatggagagggggcgggtactgggatgggtggctgtggggactgggtcctg
ctggacggcttcattcgctttgtggagggcctcaaccgcatacggcgacggcatcgctct
gacaggatcatcaggcagaagggcacacccatgaaaggactgcaggtcaccagtcctatc
ccaccctacccacctgagcctgtggcacctccacaaggaaagaggggcacttcagctctg
acagctttgctggagatggagcagaaccagaagaccctggaggagcaacagcagcagtcc
aaggctacccctgctgtgagcgatctgtctagcatcgccatggctcctacatatgtagac
agtccccgtaaggacgctgcctttgttttggattttatacgtagccctcgctcctcctac
atctatcactctcagctgcctgtggaaacctctgagccagcagagaaaggagcccaggca
ggggcggcagctggagcagcgacccctgcaggagaagctgcaaacagcagcacagacacc
agtggccaatcagcagccggggctctctgtctgtcctcctcatcgacgctgatggagatt
ctggatgccatcaaacatcccacgaccggtgtgcagctgctcccagagcagaaaggcctc
ccactcaactgctttataagtgctgaagttgttcattggctggtcaacaacgtggagggc
gtggccacacaaggcatggctgtggacatcatgcagaaaatgctggatgaaggagtggtg
gcccacgcctctggagacgccatgcgcaccttcatctatggcttctacttctacaggata
gtaggagaaaaagaaggcctcaattcccagctgcaggctgctggcggctggtccactgca
gccgtggaggattttgcccttttccagagaaagtggtttgaagtggcatttgtgttggag
gagcggcggccctgcgacctgcccgccttcctcttgccctggctgcccagccggcccgcc
tcatacgcaagtaggcacagctccttcagccgcagctttgggggacgcagccaagctgct
gcactgctagctgctaccgtcccagagcagaaaaccgtcacactggacgtggacatcaat
aaccgcagcgaccgaactgaatggtgcagctgctattaccatggcaacttctctcttaat
gctgccttcgaaatcaagctccactggatggctgtcacggctgcagtgctttttgagatg
gttcaaggttggcacaggaaagcagcttcctgtggtttcctgctggttcctgttctggag
ttcccctttgcgctgacatcctatctgtatggagacccactgagggtccagctcttcatc
ccgctccacatccagtgtctgctgaagaacggcagcgacaacctgttcgaagggtttgaa
ccagagacgtactgggacagaatgcagctctttcaggaagccatcctctacaggtttggc
tttgtacatgacaagttttcaccatcatcttttaatttccctgctgagaacaagcctcag
tacatccatgttacaggcaccgtgttcctgcagctgccgtactccaagaggaagtattct
ggcgggcagacgcggcgccgcaggaactccaccacctccaacagccagggaccgtttggc
ggcgaggagagggtgggctactactgggcttacaacaccatgctgaccaaagcctggagg
acgggggtgttgggcgatgaacggctggctgaccgcctgctcagggacttgaccgacttc
tgttctaacaaggacaacagactacaaatcttctgggacagctgccaggagaaaatgaat
gccagcgccccctaa
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