Xiphophorus hellerii (green swordtail): 116721489
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Entry
116721489 CDS
T07363
Symbol
rb1cc1
Name
(RefSeq) LOW QUALITY PROTEIN: RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116721489 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xhe01009
]
116721489 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116721489 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
xhe03029
]
116721489 (rb1cc1)
Protein phosphatases and associated proteins [BR:
xhe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116721489 (rb1cc1)
Membrane trafficking [BR:
xhe04131
]
Autophagy
Autophagosome formation proteins
ULK complex
116721489 (rb1cc1)
Mitochondrial biogenesis [BR:
xhe03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
116721489 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
116721489
NCBI-ProteinID:
XP_032421141
LinkDB
All DBs
Position
6:complement(17985504..18001887)
Genome browser
AA seq
1617 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTDLAVQTVLELKHAIQAKYKIAVQHQVLVVNGGECMAADRRVC
SYSAGTETNPIFLFNKEMILSDRDPTIPKTTFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLEDCTLSYQKLLMKFNTAYTNYQQ
DLEEIKIKLSKLGTSVSVMARIPLLECLTRHSYRESIEKSSSTPEKDSDETEEEKSTDSV
LCATQTQVASKMSASLSASGTATCEPDGDQETSEMTESDGLRAALLDDDTPELSCQSSFN
VTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLADCRDTIAKLDNQNMKSIKGL
EDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHTNQLMIMLN
NHRKLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELIERVRV
VDALSTVPQMYCLAVVEVVRRKMFMRHYREWANALVKDGKRLYEAEKFKRESFGKLFRKS
FLRNRLFRGLESWPPTSFCTRKPRKFDDELPDISLDDLQYLKSCCPVEVQPFLMIPAMCD
FEPLNRHVETLHKLVQAAQSVDEMSQTITDLLSEQRTSCSQSAQRSTAQTPQSEGKNGTT
TPVPSKMPLCLSLQGSSCQPLLVPVPAPLEDLSPDSIDAQTFDFETIGHPNMDPVLQQGS
LDLDSLAESPESDFMSAVNEFVIEENLTSPNPISDPTSPEMMVESLYSSVINAIDNKRMQ
DTTTLEKENSRIADLKEVLEKYRCAAEESHSNLRRVKADLYYLRGFVLKEQQDFGLALRS
ITMEVRSTVNKIYQCHKMELNEQHEGELLSARQELEKQVQALTEENQVNQNIVRDVQRAM
LELEGLMERKEKELTQLENEKERWVEKERNFAEKIKNLEQINCDQTEEIKTLQTSKDSLS
SQLENLHFEIERSQQKIRQELEAVSQCHLKELEEKLKQEHQKDLDSLNKNNKEALEHLAV
ENSTKLTNAADHHDTAIKEKDVQIKEMEARLTELTELRCRLEVDLALKESEMEEVRILFE
EAKMQQAEAVKTQVEQDTKVLKDELMDLKRQLQAKNEEYEVDLAELRTLMRIEKDHCISE
LVDRQEEADDPVAXGKISALQQHSQDVERNHAAQQQRLREELDQQRAALAEDEEKQFRSF
QDREQQLRTVINNLQAEHDLLSKNLEQERRAAQEQEASNVVAANAFKELEQQKEEMERRL
LEKIRQLENELHEKQSCKSDEGLSLHAEGHADAGAPLSLDSALQERLQQERASLQAQIEL
LEKKKNEEIQNLKTSLIAEQQTNFNTVLTREKLKKEQIINDLSEKLQKVTQQQEKDKALI
ETLSEDRASVMQEKKQLEEELNRLRNSALVSSAFFPSNSAQDLSEAGAAARALPVTGACS
PETSAETDRLASVTAFRDDEHVESAVEASMVASDDTVMSEEKQRIMLLERTLHMKEEENK
RLSQRLMSQSMSSVSSRHSDKIAIRDFQVGDLVLIILDERHDNYVLFTVGPTLYFLHSES
LTALDLKPASGTSRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNRKV
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgtatgtgttccaggtcaacaatggaagcacattgacttttgacactgacctt
gctgtccaaactgtattagagcttaaacatgccatccaagccaaatacaaaatcgcagtt
cagcatcaggtcctcgttgtcaatgggggggaatgtatggctgcagacagacgggtctgc
agttacagtgctggcactgaaaccaaccccatatttctgttcaacaaagagatgatctta
tccgaccgggatccaaccatcccaaaaaccaccttttccattgagagtgagattcaggtt
aaggtggaagagtcgctactgatgccagctgtctttcacaccgttgcctcacgaacacaa
cttgctctggaaatgttcgaagttgccaaaaaactttgctcgttctgtgaacgtttggtt
cacgatgagcatctccaacatcaaggctgggcagctatcatggctaatctggaggactgc
actttgtcttatcagaagttactcatgaagttcaacaccgcatacacaaattatcaacag
gacttggaagaaattaaaatcaaactttcaaagttagggacttcagtttctgtgatggcc
agaattcctctgctcgaatgtttgacaagacacagttacagagagagcatcgagaagtcc
agttcaaccccggagaaggattcagatgagacagaagaagaaaaatccaccgactctgtg
ctctgcgctactcaaacccaggtggcctctaaaatgtcagcgtccttatctgcttcaggg
acagccacatgtgagccagacggagatcaggagacaagtgaaatgactgagagtgatggt
ttgagagctgcacttttagatgatgacactccagaactctcctgccagtcttcttttaac
gtaacactattggactggattaacgtgcaagacagacctaacgatgtggaatcggttgtc
aggaaatgctttgactccatcaacaggcttgaccctcggatcatccagcctttcctggca
gattgtcgtgacacaattgcaaagctagataatcagaacatgaaatccatcaaagggctt
gaagacaggctgtacgctctagaccaaatgattgcaagctgtaagaagctggtgaatgag
cagaaagaacttgctcaggggtttttggccaatcagaaacgagctgaaaacctaaaggat
acatccgtcttgcctgatctgtgtctgagtcacaccaaccagctgatgatcatgctgaac
aaccacaggaagctgctagacatcaaaaagaagtgcaccactgccaaacaagagctagca
aacaaccttcaagtcagactcaaatggtgctgctacgtgatgcttcacgcagatcaggat
ggggagaagcttcaggctcttcttcggctcctgacagagctaatagagagagtgagggtg
gtggacgccctcagtacggtgccccagatgtactgcttggcagtggtggaagttgtcagg
agaaaaatgtttatgcgacactacagagagtgggccaatgctcttgttaaggacgggaag
cgactgtatgaggcagaaaagttcaaaagggaatcctttggaaaactcttcaggaagtct
tttctccgaaatcgattgtttagaggacttgagtcttggcctccaacttcattttgtaca
cggaaacccagaaagtttgatgatgaacttccagacatctcacttgatgacctgcagtac
ttgaaatcgtgttgtcctgttgaggtgcagcctttcctaatgattcctgccatgtgtgac
tttgagcccctaaatcgccatgtagagacacttcataagctggtccaagccgcacagagc
gtggacgaaatgtctcaaactatcacagacctgctgagtgaacaaagaacatcctgtagt
cagagcgcccaaagatcaacggcacaaactccgcagtctgagggcaagaatgggaccacc
acgccggtgccctccaaaatgcctctctgtcttagccttcagggatccagctgtcagccc
ctgcttgtacccgtcccagctcctttagaggatctgtccccagacagcatcgatgcacaa
acatttgacttcgaaaccatcggccacccaaacatggaccctgtcctgcagcagggatcc
ctggacttggattctctcgccgaaagccccgaatctgacttcatgtctgctgtcaacgag
tttgtgatcgaggagaacctgacctccccgaaccccatcagtgaccccactagccccgaa
atgatggtggagtcgctctactcctcagtcattaacgccatcgacaacaagcggatgcag
gacaccacaacgctggagaaggaaaactcaaggattgccgacctcaaggaagttctggag
aaatacagatgtgctgcagaagagtcccactccaacctaaggagagtgaaggctgacctc
tattacttaagaggttttgtcttgaaggaacagcaggactttgggttagctctgcgcagc
ataaccatggaagtgcgcagtactgtgaacaaaatctaccagtgtcacaaaatggagttg
aacgagcagcatgaaggagagcttctcagcgctcggcaggagctggagaagcaggttcag
gcgttgacggaagaaaatcaagtaaaccagaatattgtcagagatgtccaacgagcgatg
ctagagctggaggggctcatggagcgcaaagagaaagaacttacccagctggagaacgag
aaagagcgatgggtggaaaaagagagaaactttgctgaaaagataaaaaatcttgagcag
atcaactgtgatcaaacagaagaaatcaagacgctccaaacttcaaaagactctttgagc
agtcagcttgaaaacctgcattttgagatcgaacgcagtcagcagaagatccgacaggag
ctggaggcggtttctcagtgccatttaaaggagttggaggaaaaactgaagcaggaacac
caaaaggatctggatagtctgaataagaacaacaaggaggctctggaacatcttgctgtt
gaaaatagtacaaagctaaccaatgcagcagatcaccacgataccgctattaaagagaag
gatgttcagattaaagaaatggaagctcggcttacggagctcacagaactccgctgtaga
ctagaggtagacctggccctcaaagagtccgagatggaggaggtgaggatcttatttgaa
gaagctaagatgcagcaggcggaagctgtaaagacccaagtggagcaggacaccaaagtc
cttaaagatgagctgatggatctcaagaggcagcttcaagctaagaacgaggagtatgaa
gtggatctggcagagctgaggactctcatgaggatcgaaaaggaccactgcatctcggag
ctggtggaccggcaagaggaagcagacgatcctgttgcannaggcaaaatctccgccctg
cagcagcactcccaggatgtggagagaaaccacgcggcgcagcagcagaggcttagagaa
gagttggatcagcagcgggcggctctggctgaagacgaagaaaagcagtttagaagtttt
caggatcgggagcagcagttgaggacagttatcaacaatttgcaggcagaacatgatctg
ctctctaaaaacctagagcaggaaagacgtgcagctcaggagcaggaagcctcgaacgtc
gtagcagcaaatgcttttaaggagttagagcagcagaaggaggagatggagagaagactt
ttagaaaagattaggcaacttgagaatgagcttcatgagaaacagtcatgtaaaagtgat
gaaggcttgtcgctgcatgctgagggccatgcagatgctggagcacctctgtccctagac
tcagccttacaggagcgcctgcagcaggagagggcctccctgcaggcccagattgagctc
ttggagaagaagaagaatgaagagatacagaacctcaaaacatcactgattgcagagcag
cagacgaacttcaacaccgttctaacaagagagaagttgaagaaagagcagattatcaac
gacctttcggagaagttacaaaaagttacccagcagcaggaaaaagacaaagctctgata
gagacgctgtctgaggaccgagcgagtgtgatgcaggagaaaaagcaattggaggaagag
ctgaaccgtctgcgcaactctgctctggtctcctcagccttcttcccctcgaactcggct
caagatctctcagaagctggagcagcagcgagggctctgcctgttacgggggcttgctct
cctgagacctcggctgaaacggaccgactggcctccgtaacggccttcagagatgacgag
cacgtcgagtcagctgtggaagccagcatggtggcttctgatgacaccgtgatgtcagaa
gagaaacagcggataatgttacttgagaggactttgcacatgaaggaagaagaaaacaag
cgcctcagccagcgactgatgtctcaaagcatgtcctccgtgtcatcacggcattcagac
aaaattgccatcagagatttccaggtcggcgatttggttctaatcatcctggatgaaagg
catgacaactacgtgctgttcacagttggtcccaccctctacttcctgcactcagagtct
ctcactgcactggaccttaaaccagcatcagggacctcaagacggccatgggtgcttgga
aaagtgatggagaaggaatattgtcaggcaaagaaggcccagaacagattcaaagttcct
ttaggaaccaagttctacagagtgaaagctgttccatggaatagaaaagtctaa
DBGET
integrated database retrieval system
