Xiphophorus hellerii (green swordtail): 116721541
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Entry
116721541 CDS
T07363
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03013
Nucleocytoplasmic transport
xhe03015
mRNA surveillance pathway
xhe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116721541
09122 Translation
03013 Nucleocytoplasmic transport
116721541
03015 mRNA surveillance pathway
116721541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116721541
03041 Spliceosome [BR:
xhe03041
]
116721541
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116721541
Spliceosome [BR:
xhe03041
]
Complex C
Other components
EJC/TREX
116721541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
Motif
Other DBs
NCBI-GeneID:
116721541
NCBI-ProteinID:
XP_032421221
LinkDB
All DBs
Position
6:9018903..9036416
Genome browser
AA seq
1717 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLSKSGQKNALIKRLKGALMLENLQKTSTPH
VGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAYETNEQEGHTQVNNSTSCP
PPAQEVTPAAQHKPPGPSDGEGFFGSVNAGQGNRNQEADVSSPPASGSMTMRAPASEQRS
ERGSASSEVAGDSDDDDSEEDGDDDEDWGSSAPRRSLREPARMPAARSGAARHPQPQQQH
IPPLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPPVAAARHSPSSSSSGSSSSGSRS
SSPEPQRSADRKPGPLTLLARKMESEGAFSGGGWHGPDGEGDRQDSGSPSPMAFPGKGPL
DGLGSAGVIPGTHSAHIQLSGGLRKVAVAEERERERAIEMERQEKQRQLERAAEEERQRA
IALERERERIERQQALEREERERQEREEALAREREERERAMELERQKELERQRALEEERL
MKERKEKEKREREEMERAMERERAKERERLERERALEAERREKERLERERVEREKALEKE
RLEKERIERERALEKERLEKERIEKERALEKERLEKERIEREKALEQERLEKERIEREKA
LEQKRLEKERIEREKALEQERLEREKALEQERLEREKALEQERLEREKALEQERLEREKA
LEQERLEREKALEQERLEKKRIEREKALEKERLEKKRIEREKALAQERLEKERIEREKAA
ELERIEREQALEQERIEKEISLEKEKLEKKEKEQIKREQALEREKREREKKEQAEREAAL
ERERTEKERAEKERKEQIEREKALELEKLERAQALEKEKALEQERAQERLEKQMVEQQQK
KALHQEKERDANLLPPSGSSAPEQEKSHAPVAQSESQPSDSGSTPLSPQSSSKKFRFLRD
SPARPQSGSIVIKRPRTFSDSPQPRASPVTTPTSVGDQRPGGTLSSTNQEDAQIQSKQDV
GAVSVGSTGTRSDGLNANPTAAHLGSREETSTVEATLPKAEESVEGKDERKDSSISEDKS
GREAKKEEKKARRRSSSNDSSSADSDSGSSSSRSSSSSSSSQDKAVSTSRNRQEGKHERG
SSPLPMEAAESQSDDSKERPKASRPEKELPVDRINTTDGDIHTMKQTDANRKRKHSRMEE
EEEEEQQRQEKDPSTADPEKSSESSEETPKAFSGRKIYLGSSKQSPGNAEAEHESGAVAG
RKRRWGSSTAVTAKKPSISITTESLKSLIPDIRPPVGQEAVVDLHPEEAALSGTEDEERE
RSDQDLQIRRTVTQVVPVESQENGQKEAKRMRREDFEEDDSQVEGESVAAHEEQMDTSLP
ATAETQSPTLASQDTETNTVTPSDTLIRRSISQQKTGVSITIDDPVRTARQPSPPRGQVS
SIVHIWNLVRPFTLGQLKELLSRTGTLVEDGFWIDKIKSHCYVTYSSTEEAVATRAALHG
VKWPQSNPKVLRVDFCQQDELDYQKNSSGAGDRPGGGEDTGPAAPGRGRTSGLPSLLPER
DQWAEREREMERRERARAEREWDRDKVKEFGKPGEVREGGPRRSQSREKRRKERGKSKEK
KMEKKAEDPPAKLLDDLFRKTKAVPCIYWLPLTEEQFLQREAARVEEVKEREERRKEREK
RRKEEVEEEEKKKEEERKERTKAAGTSAGNRSEGEDKNRERERDRDRGRDRDRDRERDRD
RERENDKRRDGYRRSGGGGAGSSRRSRSRSEPRDRRR
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacgctggacgggagaccgctccagtccctccgtgtagcg
gacctcaaagcggctctggaggagagggggctgtcgaaaagcggacagaagaatgctctg
attaaaaggcttaaaggggctctcatgctggagaatttgcagaagacctccactccacat
gtcggactgcagcctaactcccagattggcgaggaaatgagccagaacagttttatcaag
cagtatctggctaagcaacaagagctcctgaggcagcgtctggagagagaggctcgtgaa
gcgtatgaaacgaacgagcaagagggccacacacaggttaacaacagtacatcgtgccct
cctcctgcccaggaagtcacaccagctgctcaacataagccccctgggccctcggatgga
gagggattctttggttcggtcaatgcaggacaggggaacaggaatcaggaggcagacgtg
tccagcccccctgcttccggctctatgaccatgcgagctcctgcctcagagcagcggtca
gagcgaggttctgcctccagcgaagttgcaggcgacagcgacgacgacgacagcgaggag
gatggcgacgacgatgaagactggggcagcagcgccccaagaagaagcctccgagagccg
gccagaatgcccgcggcacggtccggtgcagcacgtcacccgcagccccagcagcagcac
attcccccccttttgtctcctcagctccggcagccaacacctcctccttccccacctcca
gagttatcattccccttacctgacacccccaaacagagcccaccgagtccccctgtcgcc
gcggcaaggcactcgcccagctcctccagctccggctcttccagcagcggcagtcgcagt
agcagcccagagccgcagagaagtgccgaccgtaaacccggtccgcttacccttctggca
cgtaaaatggagtccgagggtgccttctctggaggaggctggcatggccctgatggcgaa
ggtgataggcaagacagcggttcaccttcacctatggcttttcctggcaaagggcctcta
gatggtttggggtccgccggagtgattccaggcacacattcagcccacatccaactatct
gggggtttacgcaaagtcgctgtagcggaggaaagagagagggagcgggcgattgagatg
gaaagacaagaaaagcaaaggcaacttgaacgggcagcggaggaagaacgacaaagagcc
atcgcactggaacgggagagagagaggattgagcgccagcaagctttagaaagagaggag
agagaaaggcaagagagggaagaagctttggctagagagagggaggaacgagagagggca
atggagctagaacggcaaaaagagcttgagagacagagagctttggaggaagaacgtctg
atgaaagagaggaaggagaaggagaaacgggagcgagaggagatggagagggcaatggag
cgagaaagagccaaggagagagaacggctagagagagagagagctctggaggctgagcga
agggagaaggaaagacttgagagggaaagggtagaaagagaaaaagctctggagaaggag
agattggaaaaagaaagaattgagagagagcgagctctggagaaggagagattggaaaaa
gaaagaatcgagaaagagagagctctggagaaggagagattggaaaaagaaaggatagag
agagagaaagctctggagcaggagcgattagaaaaagagaggatagaaagagagaaagct
ctagaacaaaaacgattggaaaaagagaggatagaaagagaaaaagctctagagcaggaa
agattagaaagagagaaagctctagagcaggaaagattagaaagagagaaagctctagag
caggaaagattagaaagagagaaagctctagagcaagaacgattagaaagagagaaagct
ctagagcaagaacgattagaaagagagaaagctctagagcaagaacgattggaaaagaaa
agaatagaaagggagaaggctctggagaaggaaagattagaaaagaaaaggatagagcga
gagaaagctctggcacaggaaagattggaaaaggaaagaatagagcgtgagaaagctgcc
gagttggagaggattgagagagaacaggccttagagcaagaaagaatagaaaaagaaata
tctctagagaaagaaaaactggaaaagaaggaaaaagaacaaataaaacgagagcaagca
ttggagagagaaaaaagagagagggagaaaaaagagcaggctgagagagaggcagctctg
gaacgggagaggaccgagaaagagcgagctgagaaagaaaggaaagaacagattgagaga
gaaaaggccttagagttggagaaactagaaagagcacaggccctggagaaggagaaggcc
ttggagcaagaacgagctcaggaacgattggagaagcagatggtagagcagcagcagaag
aaggcactgcatcaagaaaaagagagagatgccaaccttcttcctccaagtggtagcagt
gccccagagcaagaaaaatcccatgcccctgtggcccagagtgaatcccagccctcagac
tctggttccacacctctttctccgcaatcgtcgtctaagaagtttcgcttccttagggac
tccccagctcgacctcagtccggttctattgtcatcaagcggcctcgtacattttctgac
agcccccagcctcgggcatcccccgtcactacaccgactagcgttggggatcaaagacca
ggaggaaccttgtcctccaccaaccaggaagacgcacagattcagtccaagcaggatgtt
ggcgcggtgtccgtaggctctacagggactagatctgacggactgaacgccaaccccact
gcagcccacctgggttccagagaagaaacatctacggtggaggcaacattgccaaaggcc
gaagagtctgttgaggggaaggatgaaaggaaagactcttcaatttctgaggataaaagt
ggcagagaggcaaagaaagaagagaaaaaagcaagacgaagatcatcgtcaaacgattcc
tcttccgcagattcagactctgggtcttcgtcttctcgatcatccagttcatcctcatct
tctcaagataaagcggtctccacctccaggaatagacaggaggggaaacatgaaagaggc
tcatcaccgctgccgatggaggcagctgagtctcaatctgacgattcaaaggagcgccca
aaggcctcccgtcctgaaaaagagctgcctgtagacaggattaacaccacagatggagac
attcacactatgaaacaaacagatgcaaacagaaagagaaaacacagcaggatggaagaa
gaagaagaagaggaacaacaaaggcaggagaaagatccttccacggcggatccagaaaag
tcctcagagtccagtgaggagacaccgaaggctttctccggacgcaagatctaccttggt
agcagcaaacaatctccaggcaacgcagaggccgaacatgagtcgggggccgtggcaggt
cgcaagaggaggtggggctccagcacagccgtcactgccaaaaaaccttccatcagcatc
accactgaatcactcaagtccctgatcccagacatcaggccgcctgtaggccaggaggct
gtagtggacctacatcccgaagaagccgctctgtctgggaccgaggatgaagagcgggag
cgctccgaccaggaccttcagatccgacgcaccgtcacgcaggtggtgcccgtcgagagc
caagagaacggacaaaaagaggcaaagagaatgaggcgggaagactttgaggaagacgat
tctcaggtagaaggggaaagcgtagcggcccacgaggagcagatggacacgtctctccca
gcaactgcggaaacccagtcgccaacactagcaagccaagatactgaaaccaacactgtg
acacccagcgacaccctcattcgtcgctccatcagccagcagaaaacgggcgtttccatc
accatcgacgacccggtccgcacagccaggcagccctcaccgcctcgaggccaagtctcc
agcatcgttcacatctggaacctggtaaggccgttcaccctcggccagctgaaggagctg
ctgagcagaactggcactctggtggaggacggattctggatcgataaaatcaagtcccac
tgttatgtcacttactcgagtactgaggaggcggtcgctacccgggcagctcttcatgga
gtgaaatggcctcagagcaacccgaaggttctcagagtagacttctgccagcaggatgag
ttggactaccagaaaaactcctcgggagcaggcgacagacctggaggaggagaggacacg
ggacccgccgccccgggacgtggacggacgtcgggcctgccgtcgcttctccccgagcgg
gaccagtgggcggagcgcgagcgggagatggagcgcagagagcgggcacgggcggagcga
gagtgggaccgagacaaggtgaaagagtttgggaaacccggagaggtgagggagggcggc
ccgcggagatctcagtccagagagaaacggcgaaaagagagggggaagagcaaggagaag
aagatggaaaagaaagccgaggatcctcctgcaaagctgctggacgacttgttccgcaaa
actaaagcggttccctgcatttactggctgcccctcacagaggagcagtttcttcagcga
gaagcggctcgagtggaagaggtaaaggagcgcgaggaacggcggaaagagcgcgagaaa
agacgaaaagaggaagtagaggaggaggagaagaaaaaggaggaagagcgcaaggagaga
acgaaagccgcgggcacctccgccggaaaccggagcgagggtgaggacaagaaccgagag
cgggagagggacagagaccgaggtcgagacagagaccgggacagggagagggacagagac
agggagagggagaacgacaaacgcagggacgggtaccgtagatctgggggcggcggagcg
ggatcgagccggcgctcgcgcagccggagcgaaccaagagacaggaggcgctga
DBGET
integrated database retrieval system
