Xiphophorus hellerii (green swordtail): 116721562
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Entry
116721562 CDS
T07363
Symbol
xpc
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
116721562 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116721562 (xpc)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
116721562 (xpc)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
116721562
NCBI-ProteinID:
XP_032421270
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Position
1:9432300..9443495
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AA seq
980 aa
AA seq
DB search
MLSNCLLLRRYTRPCGEVNISYSNSWPNKNLQEVVWTGRRHQAGGMAKRRKCAETEADTK
KPKQVLNAEGRGAKTRSRKKAPENDPAEKEERLERKVNPKPRLSSKRAAQNKSSSTTIIT
ADSKTSKYFQSLPKEEVNSEDDFEMLTAAPAAVKKSTKKPEEEEEKEEEEEDDSEDEDDW
EEVEELAEPLGPAETPEPVLPPQPVEIEIETAEVRKQKKRQAEFETYLRRMMKRYKKDLL
IDTHKVHLLCLLANGMFRNRLCSEPDLLAVALSLLPPHFCTVARERIDQNYLSGLLKWFR
ATFTLDPSLPTEERPDPQALLQRRLGSLLSQRPPGDDSSFPVVPEVSAALLPTGSLSAPS
SFQASVLKVQGAKTSTGAAERCQTSQESSKSNSPETKVSPGTKRRAQGEKVKGSSRGKKA
KRKEMKEEEEEKPVLSGGQRPKNSKRRSIASKVNYKEESNSEADEEEKEEASDAEEYQES
SEDDFETSTKPARKKTGNGKSSEKTSSTQGSLKRRRTGGKQQEKNEDGEWEEGKEEEDDE
DEGTTSNRAKGRSRQRKDGPGADEWIEVYLDKSSSWVCVDVEHGVGVPHLCSQNATAPLT
YVVAVDGDGFLKDLGRKYDPTWMTASRKRRVDDEWWEDTLEPFMGPEDERDKREEKELQS
KLLNKPMPTSIAEYKSHPLYALKRHLLKYEALYPPTAAVLGYCRGEPVYSRDCVHTLHSR
ETWLKEARTVRLGEEPYKMVKGFSNRSRKARMMSEMKDENDLPLFGEWQTEEYQPPIAVD
GKVPRNDYGNVYLFKACMIPVGCVHLRLPNLHRVARKLDLDAAPAVTGFDYHGGYSHAVT
DGYIVCEENEEVLRAAWVEEQEIQKQKDKEKKEKRAIASWTLLVKGLLIRERLKQRYSQK
SQGLGXSLAPGEEAGGFSSDEDGVEVDLPGAKTASETLALSWPQNRQAEEDADPGKQKKK
KTTRREKKGQEKHLFPFEKV
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgttgagtaactgcctgcttcttcggcgttacacaaggccatgtggagaggttaatatc
agctactccaatagttggccaaataaaaatctccaggaagtagtctggactgggagaaga
caccaggcaggcggcatggccaagcggaggaagtgtgcagagaccgaggccgatacaaag
aagccgaagcaggtgctgaacgcagaaggcaggggagcaaagacgaggagcaggaagaaa
gctccagaaaacgatcccgcagaaaaagaggagaggctcgagaggaaggtcaaccccaaa
ccacgtttgtcttcaaaacgtgcagcacagaataaatcctcttcaaccaccatcatcact
gctgacagtaaaacaagtaagtacttccagtctctgcccaaggaggaggttaacagtgaa
gacgactttgagatgctgaccgctgcgccagccgcagttaagaagagcaccaaaaaacca
gaggaggaagaagaaaaagaggaggaggaagaggatgatagtgaggatgaggatgactgg
gaggaagtggaagagctggccgagccgctgggtccggctgaaacaccagaacccgtcctg
ccgcctcagcctgtagagatcgagattgagaccgcagaagtcagaaagcagaagaagagg
caggcggagtttgagacgtacctcaggcgaatgatgaagcggtacaagaaggacctgctg
atagacacacacaaggtccacctcctgtgccttctagctaacgggatgttccgcaacagg
ctgtgcagcgaaccggacctgctggcggtcgctctgtctctgctgcccccgcacttctgc
acggtggccagggaacgcattgaccagaactacctctctggactcctcaagtggtttaga
gcgaccttcacccttgaccccagtcttcccactgaggagcgtccggaccctcaggctctc
ctgcagaggcgactgggaagccttctcagccagagaccaccaggagatgactcatctttt
cctgttgttcctgaggtctctgcagctcttctgccgactggttctctctctgcacccagt
tcctttcaagcctccgtcctcaaagtccaaggggctaaaacatcaactggcgctgcagaa
cgttgccagacaagccaggaaagctccaagagcaactctcctgagacaaaagtttctcca
ggcaccaagagacgagctcaaggtgagaaagtcaaagggagcagcagaggcaagaaagca
aagaggaaagaaatgaaggaggaggaagaggagaagcccgtgttatctggaggccagaga
ccaaaaaactccaaacgccgcagcatcgcctcaaaggtcaactacaaagaagagagcaac
agtgaggcagacgaggaagaaaaagaggaagctagtgatgccgaggaatatcaggaatcc
agcgaggacgattttgaaaccagcaccaaacctgcaagaaagaagacggggaacggaaag
agctctgagaagacctcaagtacccaaggctctctaaagagaagaagaaccggtgggaaa
cagcaggagaaaaacgaggacggtgagtgggaggagggtaaagaagaagaggatgatgaa
gacgaaggcacgacgagcaacagagcgaagggacggagcaggcagaggaaagacggaccc
ggagcggatgagtggatagaggtctacctagacaaatcgtcttcgtgggtgtgcgtggac
gtggagcacggagtcggagttccccacctctgctcacagaacgccaccgcgccgctgacc
tacgtggtggcggtggacggagacggcttcctgaaggacctgggaaggaagtacgaccct
acctggatgacggcgtcccgtaagaggcgagtggacgacgagtggtgggaggacaccctg
gagccattcatgggcccagaggatgagcgggacaaaagggaggagaaagagctccagagc
aagctgctgaacaaacctatgccgacctccatagcggagtataaaagtcatcctctgtac
gccttgaagagacacctgctgaagtacgaagccctctaccctccaacagccgctgtgctc
ggatactgcagaggagaaccagtgtactccagggattgtgtgcacaccctccactccaga
gaaacctggctgaaggaagctagaactgttcgacttggagaggagccgtacaagatggtg
aaaggcttctccaaccgctccagaaaggccaggatgatgtccgagatgaaggacgagaat
gatcttcctctgtttggagaatggcagactgaagaataccagccacccatagctgtggat
gggaaggtcccccgtaatgattacggtaacgtctacctgtttaaagcctgtatgatcccg
gtgggctgcgttcacctgaggctgcccaacctgcatcgcgtggctaggaagctggacctg
gatgctgcgcctgcagtcacaggattcgactaccacggaggatactcccacgctgtgact
gatggttacatcgtgtgtgaagagaacgaggaggtcctccgagctgcctgggtggaagag
caggagattcagaaacagaaagacaaagagaaaaaagagaagagagcgatcgccagctgg
actctgctggtgaagggactcctgatcagagagaggctgaagcagcgttacagccagaag
agccagggcctagggnngagcctcgctcctggagaggaagctggaggtttctcctccgat
gaggacggggtcgaagttgatcttcccggagccaaaacggcatctgagactctggcgctg
tcctggccccaaaacagacaagcagaggaggacgcagatccaggcaaacagaagaagaag
aagacgacaaggcgagagaagaagggtcaagagaaacatttatttccttttgagaaagtt
taa
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