KEGG   Xiphophorus hellerii (green swordtail): 116721658
Entry
116721658         CDS       T07363                                 
Symbol
wdr48
Name
(RefSeq) WD repeat-containing protein 48 isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
xhe  Xiphophorus hellerii (green swordtail)
Pathway
xhe03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:xhe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    116721658 (wdr48)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xhe03400]
    116721658 (wdr48)
DNA repair and recombination proteins [BR:xhe03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     116721658 (wdr48)
SSDB
Motif
Pfam: WD40_Prp19 DUF3337 WD40 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_DCAF12 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_DCAF4 WD_LRWD1 Beta-prop_Vps41 Beta-prop_IP5PC_F WDR54 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_NUP159_NUP214 RAWUL WD40_like Tfb2_C
Other DBs
NCBI-GeneID: 116721658
NCBI-ProteinID: XP_032421405
LinkDB
Position
6:complement(9393093..9406122)
AA seq 677 aa
MATHHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVY
QQKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMG
TVIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGTIRLWSLG
QQRCIATYRVHDEGVWALQVNEAFTHVYSGGRDKKIYCTDLRNPDIRVLICEEKAPVLKM
ELDRSADPPPAIWVSTTKSSVNKWSLKGMHNFRSSGEYDNDCTTPLTPLCTQPEQVIKGG
ASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKGEDLGKVEFDEEIKKRFKMVYVPNWF
SVDLKTGMLTITLDESDCFAAWVSAKDAGFSSSDGSDPKLNLGGLLLQALLEFWPRTRIN
PMDEEENEVNHVNGEQENRVQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESM
LLNETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVRKVMEHV
YEKIINLDNESQTTSSSANDKPGEQEKEEDMAMLAEEKIELMCQDQVLDPNMDLRTVKHF
IWKSGGDLTLHYRQKST
NT seq 2034 nt   +upstreamnt  +downstreamnt
atggccacgcatcacaggcaaaatgctgctgggcggaggaaagtacaggtttcctatgtg
attagagacgaggtggagaagtacaatcgcaatggagtgaatgcactccagttagaccct
gctctgaaccggctcttcaccgcggggagagactcgatcatccgaatatggagcgtctac
caacaaaaacaggacccatatattgcatctatggagcaccacactgactgggttaatgat
atagttctttgctgcaatggaaaaacattgatatcagcttcatcagatactacggtgaaa
gtgtggaatgctcataaaggattttgcatgtcgacgttacggacgcacaaggactacgta
aaagctttagcgtacgctaaggacaaggagcttgtggcgtcggccggtctggaccggcag
atcttcctgtgggatgtgaacacactgacggcgctcacagcctccaacaacacggtcacc
acttcgtcgctgagtgggaacaaggactccatctatagtctggctatgaaccagatggga
acagttatagtctccggctccactgaaaaggttttgagagtgtgggaccctcgaacgtgt
gcaaagcttatgaagctaaaaggtcacacagacaacgtcaagtcgttgctcctgaatcgc
gatggcactcagtgcctgtcggggagctcggacgggaccatccgcttgtggtcgctcggc
cagcagaggtgcatcgccacgtacagggtacacgacgaaggcgtctgggccctgcaggtc
aacgaggccttcacacacgtatactctggaggcagggacaagaagatttactgcacggac
ctgagaaacccggacatccgtgtgctcatctgcgaggaaaaggccccggtgctcaaaatg
gagctggacagatctgctgacccacctccagcgatctgggtttccaccaccaagtcatct
gtgaataaatggtctctaaagggaatgcacaacttcagatcatcaggggagtacgataat
gactgcaccacccctctgactccactgtgtactcagccagaacaagttattaagggaggt
gccagtattatacagtgccacattttgaacgacaagagacacatactcaccaaagacacc
aacaacaatgtggcgtactgggatgtgctcaaggcttgcaaaggagaagacttgggcaaa
gtggaatttgatgaggagattaaaaagcggttcaagatggtgtacgtgccaaactggttc
tctgtcgatctgaaaaccggaatgctcacaattactctggatgagagcgattgctttgct
gcttgggtgtctgcaaaggacgctgggttttcaagttctgatggatctgatccgaagttg
aacttgggcggcttgttgctccaagctctgctggagttctggcccagaacgcgcatcaac
cccatggacgaggaagaaaacgaggtgaaccacgtgaacggcgagcaggagaacagggtg
cagaaaggaaacggatattttcaggtcccgcctcacacgcccgtcatcttcggagaagca
ggaggaagaactctatttaggctgctatgtagggattcaggcggcgagactgaatccatg
ctgctgaatgagacagtcccacagtgggtcattgatataacagtagataaaaatatgcct
aaattcaacaaaatcccattctacctccagccccattcttcttctggtgcaaaaactcta
aaaaaggatcgtctctcggccagcgatatgctccaggtgaggaaggtgatggagcacgtt
tacgagaagatcataaacctggacaacgagtcgcagaccaccagctcctcggccaacgat
aaacccggagagcaggagaaggaagaagacatggcgatgctcgccgaggagaagattgag
cttatgtgtcaagaccaggttctagaccccaacatggacctgcggacagttaaacatttt
atctggaagagtggaggggacttgacacttcactataggcagaagtcgacatga

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