Xiphophorus hellerii (green swordtail): 116721777
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Entry
116721777 CDS
T07363
Symbol
exosc4
Name
(RefSeq) exosome complex component RRP41
KO
K11600
exosome complex component RRP41
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116721777 (exosc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116721777 (exosc4)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116721777 (exosc4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
116721777 (exosc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
116721777
NCBI-ProteinID:
XP_032421621
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Position
6:complement(17191327..17193673)
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AA seq
245 aa
AA seq
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MAGLELLSDQGYRLDGRKSTELRKVQARMGVFAQADGSAYLEQGNTKALAVVYGPHEMRG
SRSRALHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQLFPRSQ
IDIYVKILQSDGGNYSVCVNAATLAVIDAGIPMRDYVCACTVGFVDETPLADLCYAEESG
GVSSLALALLPRGGQIALVQMDARLHQDHLETLIEAAMTACKCVSKVLDEVVRQHLQETS
VLSRE
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcttggagctgctctctgatcaaggataccgcctggatggaagaaaatccacc
gaactacggaaagttcaggcccgtatgggagtgtttgcccaggctgacgggtctgcttat
ttagagcaaggaaacaccaaggctctggctgtggtctacggtccgcacgagatgcggggc
tccagaagtcgggctcttcacgatcgagctgttatcaattgccagtacagcatggccacg
ttcagcacagctgagaggaagaggagaccacacggagatcgcaaatccaccgagatgagt
ctccacctgaagcagacgtttgaagctgctgtgatgacccagctcttcccacgctctcag
atagacatctatgtgaagattctacagtcagatggagggaactacagtgtatgtgtgaat
gcagccacattggcagtcattgatgcaggcatccccatgagagactatgtctgcgcctgc
actgtaggttttgtcgacgagactccccttgccgacctttgctatgctgaggagagcgga
ggagtgagttctctggctttggcgctgctgccccgaggaggacagattgctctcgttcag
atggatgctcgactgcatcaggaccacctggaaactctgattgaagccgcaatgactgct
tgtaaatgtgtgagcaaggtgttggatgaggtggtgaggcagcacctccaagaaacgtcg
gtgctctccagagagtaa
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