Xiphophorus hellerii (green swordtail): 116721906
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Entry
116721906 CDS
T07363
Symbol
tnn
Name
(RefSeq) tenascin-N
KO
K06252
tenascin
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04510
Focal adhesion
xhe04512
ECM-receptor interaction
xhe04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116721906 (tnn)
04518 Integrin signaling
116721906 (tnn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116721906 (tnn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xhe00536
]
116721906 (tnn)
Glycosaminoglycan binding proteins [BR:
xhe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116721906 (tnn)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Teneurin
EGF_TEN
FN3_DSCAM-DSCAML_C
Fn3_PBP1
EGF_2
Fn3_Dep-1_3rd
EGF_Tenascin
Arylsulfotran_N
DUF4998
Fn3_Dep-1_4th
DUF7949
Fn3_Dep-1_2nd
DUF4249
DUF460
Motif
Other DBs
NCBI-GeneID:
116721906
NCBI-ProteinID:
XP_032421824
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All DBs
Position
6:14701554..14738495
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AA seq
1144 aa
AA seq
DB search
MALATRTSSPNLTDTDIEIQTSCGNEHWTPVEGPVPADYTSTVSHHVLCIDNQPDSSGTE
QGLTFSHIYKLDIPGSSSCTVERLPTHKTGLQQDTITNGENDIIFKHNIRLQTPKCNCEE
SESFKDLLYRINGLEEEVTYLKTQCTQGCCGRGGVAGVDTSCSGHGTYQQDTCSCLCNPG
WEGPDCSVSSCPDECNDNGRCVDGKCVCYEGYTGEDCSQLTCPSDCNDKGECKDGKCVCF
PHFTGEDCSTPTCPNDCRDNGQCVDGQCVCEEGFYGEDCSLVLTPQGLRLVQVTDVSLLV
EWESVQGAEYYMLTYHPKFDEGAMEEVRISNSENSYRITGLTPGVTYMVQVYAVIKKIQS
EADMIEATTDVSTVDDMQVIGQTEVSIQVDWKNPQAEVDYFRLTHTDPSGQEEELNVQRS
QEARTKHTIVGLYPGTEYQISVQSIKGNTKGKASFATGVTDIDAPTNLVTTEVTEDTATV
SWDKAQAEIEGYMLRYTSAEGSSSDIFVGRDSTSYRLVGLRPGVLHTVYIWAFKGDKVSG
KSSTEAETELDAPTNLSVEDETDSSFRVYWDPTEAQIDGYMLTYSSIDGSREETPVGSVS
SYVLTGLRPGVVYTVYVWAVRGSKASRKTSTQAETELDAPANLVAQDETESSFSLSWDPV
QAEIDGYILTYTSLDGSSAEISLGPESTSYLLTGLRPAVLYTIYIKALRGDKTSRTISTQ
AETELDAPANLIARDETESSFSLSWDPIQAEIDGYILTYILPDGSSKEILVGPDSASYVL
TGLRPAFIYTVYIKAVRGDKASRTISTQAETEIDSPKDLKASDVTQDSASFTWVPPLADI
GGYILTYRDVEGKLQTIENRLDSSKRRFAASKLERGKRYIVTIYAFRGSKRSKVVETFFK
TVALLYPFPMDCGQIMKNGNKNNGVYTVYIHNNQSKPIQVYCDMTTDGGGWLVLQRRNTG
NLDFMKRWRQYIAGFGNLTEEFWIGLDKIHELTNTPTQYEIRFDLGLGSERAHAVYDNFK
IAPVRQRFKLTIGKYRGTAGDAMTYHQGLPWTTIDSDNDLALTNCARTHKGAWWYANCHL
ANLNGKWGDNAHSVGVNWEPWKGHLTSLDFTEMKIRPVGALSSRKRRSLMAREGKSRVSN
AHNK
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atggctcttgcaacccgcacgtcctctccaaatttgactgacacagacattgaaattcaa
acttcttgtggcaatgagcactggactcctgtggagggccctgtgcctgctgattatact
agcactgtgtcacaccatgtgctctgcatagacaaccagccagattcctctggcacagaa
cagggactcaccttcagccacatctataagcttgacatcccaggaagttccagttgcacc
gtggaacgtctgccaacacacaagacaggtctgcaacaagataccataaccaatggagaa
aatgacatcatctttaaacacaacattaggctgcaaacacctaagtgtaattgtgaggaa
tcagaaagcttcaaagacctactgtacagaatcaatggactggaagaagaagtgacctac
ctaaagacccagtgcactcaaggatgctgtgggagaggaggtgttgcaggtgtagacaca
agctgcagtggccatggtacctaccagcaagacacctgcagctgcctttgtaacccagga
tgggaaggccctgattgctctgtctcctcctgccctgatgagtgcaacgacaatggccga
tgtgtagatgggaaatgcgtatgttatgagggttacacaggagaagactgcagccagctg
acatgtccaagtgactgcaatgataagggggagtgcaaggatggaaaatgtgtgtgtttc
cctcattttaccggtgaagactgcagtaccccgacgtgtcctaatgactgtagggacaat
gggcagtgtgtggatggccaatgtgtctgtgaagaaggcttctatggagaggattgttct
ttagtcctcacacctcagggtctgaggttggtccaggtgacggatgtttctctcctggtg
gagtgggagtctgtccaaggggcagagtattacatgctgacttatcaccccaaatttgat
gagggtgccatggaggaggttcggatttccaactcagagaattcctaccgcattacggga
ctcacacccggtgttacctacatggtccaagtctatgctgtcatcaaaaagattcagagt
gaggctgatatgattgaagccaccacagatgtctcaactgttgatgatatgcaagtcatt
ggccagacagaggtttccatccaagtggactggaagaacccgcaggcagaagtggattac
ttcagactgacacatactgacccgtcaggacaggaggaggagctgaatgttcagaggagt
caagaagcacgcaccaagcacactattgtgggtctatatcccggaacagagtatcaaatt
tctgtgcagtccatcaaagggaacaccaaaggaaaagcttcttttgcaactggtgtcaca
gacatcgatgccccaacaaaccttgtcactactgaagtaactgaagacaccgcaactgtc
tcctgggataaagcccaggcagaaatcgaaggctacatgttgcgctacacttctgctgaa
ggctccagctcagacatctttgtagggcgtgacagcacctcctacaggctggttggtttg
aggcctggggtcctccacacagtctacatctgggccttcaagggagacaaagtcagtggg
aagagttcaactgaagccgaaacagagttggatgctcctactaacctttcagtcgaagat
gagacagactccagcttcagagtttactgggatcccaccgaggcacaaattgatggctac
atgctcacctatagctccattgatgggtcaagggaggaaaccccagttggatctgttagt
tcttatgtgctcactggccttaggccaggggtcgtctacactgtctacgtctgggctgtc
aggggaagcaaagccagcaggaagacctcaacacaagccgagacagagctggacgcccca
gctaacctcgtagctcaagatgaaaccgagtccagcttcagcctttcctgggatccagtc
caggcagaaatagatgggtacatcctaacctacacctcccttgatggatctagtgcagaa
atctctttgggcccggaaagcacctcttatttgctgactggtttaaggcctgcagtcctc
tacactatctacatcaaagccttgaggggagacaaaaccagcaggacaatatccacacaa
gctgagacagaactggatgctccagctaacctcatagccagagacgaaaccgagtccagc
ttcagcctttcttgggatccaatccaagcagaaatagatggctatatccttacctacatc
ttacctgacggctctagtaaagagatccttgtggggcctgatagtgcctcttatgtcctg
actggtttacggcctgcgttcatctacactgtctacatcaaagctgtgaggggagacaaa
gccagcaggacaatctcaacacaagctgaaacagaaatcgactcccctaaggacctaaag
gcttcagatgtgacacaggattcagcttctttcacttgggttcctcctctggccgacatt
ggtggttatatcctcacctatagagatgtagaaggaaaattgcagactattgaaaatagg
cttgactccagcaagagacgcttcgctgcgtcgaagctggagaggggaaagaggtacatt
gtcaccatttacgcctttaggggcagcaaaaggagtaaggtggtggagaccttcttcaaa
acagttgctctgctgtaccccttccctatggactgtggacaaataatgaagaacggcaat
aaaaacaatggcgtctatactgtctacattcataataaccaatccaagccgatacaggtt
tactgtgacatgaccaccgatggaggcggttggctggtacttcagcggcgtaacactggg
aatctggacttcatgaaacgctggaggcagtacatagcaggctttggcaacctgacagag
gagttctggattggtttggataagatacacgagctaaccaacactcccacgcagtatgag
atcaggttcgacttgggcctgggctcagagagagcgcacgccgtttatgacaactttaag
atcgctccggtcagacagagattcaagctcaccattggcaaatacagagggacagcaggt
gatgccatgacctaccaccaaggcctgccctggaccaccatagattcagataatgatctt
gcgttaactaactgtgccaggacccacaaaggagcttggtggtatgcaaactgtcacttg
gccaaccttaatggtaaatggggagacaacgcacacagcgtgggagtcaactgggagcca
tggaaaggacatctaacatccctggacttcacagagatgaagatccgacccgtgggagcg
ttgtccagcagaaagaggcgatcgctgatggccagagagggaaaaagtagagtctcaaac
gcccacaacaaatag
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