Xiphophorus hellerii (green swordtail): 116722198 Help Entry 116722198         CDS       T07363                                  Symbol cop1 Name (RefSeq) E3 ubiquitin-protein ligase COP1   KO K10143   E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27] Organism xhe  Xiphophorus hellerii (green swordtail) Pathway xhe04115   p53 signaling pathway xhe04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:xhe00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     116722198 (cop1)  09140 Cellular Processes   09143 Cell growth and death    04115 p53 signaling pathway     116722198 (cop1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04121 Ubiquitin system [BR:xhe04121]     116722198 (cop1) Enzymes [BR:xhe01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      116722198 (cop1) Ubiquitin system [BR:xhe04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     116722198 (cop1)   Multi subunit type E3    Cul4 complex     Target recognizing subunit (DCAF)      116722198 (cop1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd zf-RING_2 Beta-prop_EML Beta-prop_DCAF4 zf-RING_UBOX zf-C3HC4_4 Beta-prop_WDR90_POC16_2nd zf-C3HC4_3 zf-RING_5 RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 zf-rbx1 WDR90_beta-prop_4th zf-RING_10 Beta-prop_SPT8 UvrD-helicase zf_C2H2_10 Sina_RING Motif Other DBs NCBI-GeneID:  116722198 NCBI-ProteinID:  XP_032422284 LinkDB All DBs Position 6:complement(9626333..9639778) Genome browser AA seq 693 aa AA seqDB search MSGSRPQQSGGGASSVPGSTSSSSSSSTGGSGSNAVTSNGPATGNVVPSRTLGATNEAGS FASLTSRPSASSGSRKKSLHQAPLYNGLLNSYEDKSNDFVCPICFEMIEEAHMTKCGHSF CFKCIRQSLEDSNRCPKCNYIVDNVDQLYPNFLVNELILKQKQRSEEKRLKLDHPNWPRW QVFQDILSPDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQILMEFLKEARRNKREQL DQLQKELNFLEEDIKRVEDVSGISSPTMEAECTVPNVEAPSPAPSSIIEPPDYNQTPGFG ATTPVKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNKMSRITDEGRNLNQLEDFMECLSK FTRYNTVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVFEYGTVIQDAV DIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWS VDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPTSRYHLAFGCADH CVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLKLWNVNKPHCLRSFKG HINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDKKEDDTNE FVSAVCWRALPDGESNVLIAANSQGTIKVLELV NT seq 2082 nt NT seq  +upstreamnt  +downstreamnt atgtccggcagccggccgcagcagagcggtggtggggcaagttcagtgcctggcagtacc agtagcagcagcagcagcagcactggaggcagtggaagcaatgccgttacgagcaacggg cccgctactgggaatgttgtgccgtcccggactctgggtgcaacaaacgaggcaggcagc ttcgcttccctaacaagcagaccttcagcgtcctcaggcagcagaaagaagtccctccat caggcacctctatacaacggcctcttgaactcatacgaagataaaagcaacgactttgtg tgtccaatttgcttcgaaatgatagaggaggctcacatgacaaagtgtggacacagtttt tgtttcaaatgtattcgtcagagcttggaagacagcaacagatgtcccaagtgtaactat attgttgataatgtggatcagctgtaccctaactttcttgtaaatgaactgatccttaaa cagaaacaaaggtctgaggaaaaaagactaaagttagatcatcctaactggccgcggtgg caggtcttccaggatattctgagtcctgatcaagaaaacttggacctcgcaaatgtcaat ctgatgttggagcttttggttcagaagaaaaagcagctggaggcagaatcccaagcagct cagaggcagatcctcatggagtttcttaaggaagcaagaagaaacaagagagagcaacta gatcagctacagaaagagctaaacttccttgaagaagacattaagcgtgttgaggatgta agtgggatttcctccccgacgatggaggcagagtgcacagtgcctaatgttgaggctcct tctccagcccccagcagtatcattgaacctccagattacaaccaaacaccaggatttggt gcaacaactccagtgaagcgacagacttggtataacagcacactggcatctagaagaaag aggctgactgctcattttgaggatctggagcagtgctacttctccaacaaaatgtcacgc atcacagatgagggcagaaacctgaatcagctggaggattttatggagtgtttgtccaaa ttcactcgctacaacactgtgcggccgctggccaccctctcctatgccagtgatctctat aacggctccagtattgtctctagtattgagtttgaccgtgactgtgactatttcgccatc gctggtgtgaccaaaaagatcaaggtttttgagtatggaactgtgatccaggatgcagtg gacatccactatcccgtcaatgaaatgacctgcaattccaaaatcagctgtatcagctgg agcagttatcacaagaaccttctggccagcagcgactatgagggcaccgtcattttgtgg gacggattcaccggccagaggtccaaagtctaccaggaacatgaaaaaagatgctggagt gtcgacttcaatctgatggaccccaagcttttagcctccggttctgatgacgctaaagta aagttgtggtcaaccaatcttgacaactctgtggctagcatcgaggctaaagctaacgtg tgctgtgttaaattcagtccaacctcccgatatcacctggccttcggctgtgcagatcac tgtgtgcattactatgatctacgcaacactaagcagccaatcatggtgtttaaaggccac aggaaagcagtgtcctatgccaagtttgtaaatggagaggagatagtttctgcgtcgaca gacagtcagctgaagttatggaatgtcaacaaacctcactgcctgcgctccttcaagggt cacatcaacgagaagaactttgttggcttggcatccaatggagactatgttgcctgtggc agcgaaaacaactctttgtatctgtactacaaaggactttccaagacgctgttaacattc aagtttgacacagttaagagcgtcctggacaaggacaagaaggaagacgacaccaatgag tttgtcagtgccgtctgctggagggcgctgccagatggagagtcaaatgttctaattgct gcaaacagccaaggaacaatcaaggtgcttgagctcgtctga

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