Xiphophorus hellerii (green swordtail): 116722200
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Entry
116722200 CDS
T07363
Symbol
ss18l1
Name
(RefSeq) calcium-responsive transactivator isoform X1
KO
K15623
protein SSXT
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116722200 (ss18l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xhe03036
]
116722200 (ss18l1)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116722200 (ss18l1)
GBAF(ncBAF) complex
116722200 (ss18l1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SSXT
Phage_tube_C
Motif
Other DBs
NCBI-GeneID:
116722200
NCBI-ProteinID:
XP_032422322
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Position
1:complement(22132178..22140676)
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AA seq
403 aa
AA seq
DB search
MSVAFSSTRPRSKGEVTQQTIQKMLDENHHLIQCIMDYQSKGKTAECTQYQQILHRNLVY
LATIADSNQNMQSLLPAPPSSNMSMDQGRMSHSGGHAPSNLNDSTGTGVTATSMIQSQMS
NGPSHAPMQSGHMQLATPSTSIYSSSASGYSHATPSSQGSLVQGPKAGYGSSSSFSSTPS
SSSSPRSNLNMQSSQVSMMHQQSAPPHHSSAHSAGQYQGQQAMGMMGQASQGNSMMPQRP
IGSYRSSQQESVQHYMGQDERYGEQYGHTQSSTEPINQQYYADGLGEYSYQQSSYGEQGY
DRSLDESSQHYYEGGNSQYNQQQTLYQQSSGQQQPYSQQQYSSQQGYSGQPQGYGPSQGG
SSQFSQYQQSQSQQYGSYRASQGGSGAQTQRPYSYEQGQYGNY
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtggcgttttcatcgacgcgtcccaggagtaaaggggaggtgacacagcaaacc
atccaaaagatgttggatgaaaatcatcatctaatacaatgcattatggactaccaaagt
aaaggcaagacagctgagtgtacacagtatcagcagattctgcacaggaatcttgtttac
ttggccacaatagctgattctaatcagaacatgcagtcacttctaccagctcctcctagt
tccaacatgtccatggatcaaggaagaatgagccacagtgggggacatgctccaagcaac
ctcaatgacagcactggaacaggagtgaccgccacatccatgatccagagtcaaatgagc
aatggcccgagccatgcccccatgcaatcaggtcacatgcagttggctactccatccacc
agtatctacagtagctcggcatctggctacagccatgctacgccctcctctcagggtagc
ctggtccagggcccaaaggcaggttatggttcctcttcttctttctcctccacgccctca
tcttcctcctcccctcgcagcaacctcaacatgcagtcgagtcaagtctccatgatgcac
caacaatctgctcctccacaccactcctcagcccactcagcaggacagtatcagggacag
caggcgatgggcatgatgggacaagccagccaagggaatagcatgatgccccagaggccc
ataggatcctaccgctcctctcagcaagaatctgtacaacactacatgggacaagatgaa
cgctacggagagcagtatggacacactcagagctccaccgagcccataaaccagcagtat
tacgctgatggccttggagaatactcttatcagcagtcttcatatggtgaacaaggctat
gacaggtcgcttgatgagtcttctcaacattactatgaaggaggtaactctcagtacaat
caacagcagaccttatatcagcagagctctggtcagcaacagccttacagccaacagcag
tactcctctcagcagggctacagtgggcagccacaaggatatggtcctagccagggggga
tcatcccagttttcccagtatcagcagagtcagagccaacagtatggatcctatcgcgct
tcccaaggcggttccggagcacaaactcagagaccgtactcttatgaacagggtcagtat
ggaaactattag
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