Xiphophorus hellerii (green swordtail): 116722423
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Entry
116722423 CDS
T07363
Symbol
taf4
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116722423 (taf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116722423 (taf4)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116722423 (taf4)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116722423 (taf4)
Coactivators
SAGA/TFTC/STAGA complex
116722423 (taf4)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
116722423 (taf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
DNA_pol3_gamma_R_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
116722423
NCBI-ProteinID:
XP_032422503
LinkDB
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Position
1:22145316..22157761
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AA seq
853 aa
AA seq
DB search
MDGTAGITSAAEPITTAAKSHFGSLTTSGAVTGASGATAGGDKQQATGAPALDGNGAVMN
CHIPGSGQSDSSQTAVVNGPASASPGFIIRTSLSAQNTSTSSGSSSQPAEKTVPTVALVR
PPMQTSANETQSTESPNTVLSSGSGSVSCKTEPTKNITQAGAQVLPSGVLSATMRNPTVL
QNLRTTLSSTISAAPPGGIRTIAPQVLAPRLTQPQQNATSIQNIQIPAGMVLVRSESGQL
LMIHQQTLAQMQAQAQSQSATTPRPAAPPSTPPVQVTSLQTPGGPLLARSVTPTTIIKQG
SPVQTTVATTTTLQRPPVLQNTIILGGNATSTGQALGTPTTVQATAAVTQRVGPLGATGV
PVTPTTITAETLENVKKCGNFLSTLIKLASNGKQSSETTATVKELVRNLLEGKIEPEDFT
SRLYKELNSSPQPYLVPFLKRSLPALRQMTPDPEAFIQQSLLPQPSGQPAAATSPALGAV
VLRPSLSPAVSAATGSTTTKATVITLSQKANSKPGLVVAQQQVRPQVTLAQSPLVTIRGA
APSRIIVGQPQMVRHTPQGSVVKQNVAPGTRGVQLLNQASLVDAQRNKLKEAGGGTFKDD
DDINDVASMAGVNLSEENARIMASSSELVGIVTRSCKDEAFLSISSLTWIVLQIGKKFGV
SELGTDVINYISHATQQRLQNLLENASQVAQLKNLNFKEDERCEQVSDVRAQLKFFEQLD
QMEKQRKEEQEREILLKAAKSRSRQEDPEQLRLKQKAKEMQQLELAQIRQREANLTALAA
IGPRKKRRTDSPLSASAEGSGLGSSQPGGSSGQGSRQFMRQRITRVNLRDLLLCLENDRD
SSHSQLLYKGLLK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggacgggacagctgggatcacatcggcggctgaaccaatcacgactgccgcgaagagt
cacttcggctcactgacaacaagcggagcagttacaggagcatcaggtgcaacagctggg
ggtgacaaacaacaagcgactggtgctccagctttggatggaaacggcgcggtgatgaac
tgtcacatccccggaagcgggcagtcagacagctcacagacagctgttgtgaatggaccc
gcttctgcctctcctggttttattattcgaacttctctgagtgcacaaaatacttcgacc
tcatctgggagttcgtctcagcctgctgagaaaactgttcccacagtggcgcttgtaagg
ccacctatgcaaacttctgctaacgagactcaaagtacagaaagcccaaatacagtctta
tcatcagggagcggtagtgtttcctgcaaaactgaacccactaaaaatataactcaagcc
ggtgctcaggtcctgccttcgggtgttttgtctgcgaccatgaggaatccgactgttctg
caaaacttgaggacgacattgtcgtcaacgatcagtgccgctccgccaggaggaatacgg
accattgctccacaggtgttggctcctcgactcactcagcctcaacaaaacgctacaagt
atccaaaacatccaaatccctgcaggcatggtgttggttcgcagtgagagtgggcagctg
ctgatgattcaccagcagactttggctcagatgcaggctcaggcacagtcacaaagcgcc
acgacgccacgacctgcagccccccccagcactccacctgtccaggtcacgtctcttcag
actccaggaggtcctctgctggctcgctccgtaaccccgacgaccatcatcaaacagggt
tccccagttcaaaccactgtagcaaccacaaccaccctccagagacctcctgttctgcag
aataccatcatacttggagggaatgccacttccacgggacaagctcttggaacgccaacc
acagtgcaggcaacggcagcagtaactcagagggtggggcccctcggggccactggggtg
cccgtcactccaacaaccatcacagctgaaacactggagaatgtgaaaaagtgtggaaac
tttctgtctacactcatcaagttagcatccaatggaaaacagtcatctgagactacagcc
actgtcaaggagcttgttaggaatttgctggaaggaaagatagagcctgaggatttcacc
agcaggttgtacaaggagcttaattcttctcctcagccataccttgtaccttttcttaag
agaagtcttccggcgttgcgccaaatgaccccagatcccgaggccttcatccagcaaagc
ttgctgccccagccaagcggtcagccagctgcagcaacctctccagcccttggcgctgtg
gttctgcgtccttctctttcgcctgcagtcagcgcggccacaggctctaccacgaccaag
gccacagtcatcaccctctctcagaaagccaacagtaaacctggactggttgtggcccag
cagcaggtgaggccacaggtgaccttggctcagtctcctttggtaacgatcagaggagca
gctcccagccgcatcattgtgggtcaaccacagatggtcagacacactccacaaggttct
gtggtgaagcaaaatgtggctccagggaccagaggagttcaactactcaaccaggcatcc
ctcgtcgatgctcagaggaacaagctaaaggaagcaggaggggggactttcaaagatgat
gatgatatcaacgacgtggcttccatggcaggggtcaacttatccgaggagaacgcccgc
atcatggccagcagctctgaacttgttggcatcgtgactcggtcttgtaaggatgaggct
ttcctctccatctcctctctcacctggatagttctgcagattggtaagaagtttggtgtc
agtgaattgggcacagatgtgatcaactacatttcccatgctacacaacagcgactgcag
aacctgttggaaaacgcttcacaagtggcacaactgaagaatttaaattttaaggaggac
gagcggtgtgagcaggtcagcgacgtgcgagctcaactcaaattctttgagcagctggat
cagatggagaagcaaaggaaggaggagcaagagagagagatcctgctgaaggctgccaag
tctaggtcacggcaagaagacccagaacagctcagactgaaacagaaggccaaagagatg
cagcagctggagttggctcagatcaggcagagagaagccaacctaacagcgttggcagca
atcggcccgaggaaaaaacggagaacagactcccctttaagtgcgagtgcagagggttca
gggttgggatcctcccagcctggaggctccagtggacagggctccagacagtttatgcgc
cagcgcatcaccagagttaacctccgggacctgctcttatgtctggagaatgacagagac
tccagtcactcccagctactctacaaaggtctcctcaaataa
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