Xiphophorus hellerii (green swordtail): 116722605
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Entry
116722605 CDS
T07363
Symbol
ddx3x
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
116722605 (ddx3x)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116722605 (ddx3x)
03041 Spliceosome [BR:
xhe03041
]
116722605 (ddx3x)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116722605 (ddx3x)
Enzymes [BR:
xhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116722605 (ddx3x)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116722605 (ddx3x)
mRNA cycle factors
Common to processing body (P body) and stress granule
116722605 (ddx3x)
Spliceosome [BR:
xhe03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116722605 (ddx3x)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
116722605 (ddx3x)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
116722605
NCBI-ProteinID:
XP_032422659
LinkDB
All DBs
Position
7:complement(4442314..4458201)
Genome browser
AA seq
775 aa
AA seq
DB search
MSHVVVDNPHGLDQQLAALDLNPDGQGGGTGRRYIPPHLRNKDAAKNAGNSYPAGKQCGY
SVAPVNFYAPKQCPQPWQADCQPTQGATCPSGWDDCTMGYPRLASQELAFYHAYGGGWRN
RCDSPGWDGGRTNGFVNGFHDNRTNGGFGGRGPPRNDRGGRGAYRGNRGGGSFNQPLQNT
GFGGYENKDGGWGGAPRDAAYNSFGGRNDRSKSAFFNDRGAGSRGRYERGGFGGGGNSRW
VEDSRGEDDWSKPTAPNERLENELFSGSNTGINFEKYDDIPVEATGSNCPPHIESFHDVD
MGEIIMGNITLTRYTRPTPVQKHAIPIIKIKRDLMACAQTGSGKTAAFLLPVLSQIYTEG
PGDALQASKSSGQENGRYGRRKQYPISLVLAPTRELALQIYDEAKKFAYRSHVRPCVVYG
GADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDHCNYLVLDEADRMLDMGFEPQIR
RIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWV
EENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREE
ALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT
SFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHKSTSRGRSKRFSGGFGARDYRQ
ASGGSGGFNSNRSGRNAGGHGGNRGFGGGGFGGNFYNDGYGGNYNHSGSVDWWGN
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgttgataatccacacggtctagatcagcagcttgctgccctagac
ttgaaccctgacggtcaaggcggaggaactggcagacgctacattccacctcacctgagg
aacaaagatgctgcaaaaaatgcaggaaattcttatcccgctggtaaacagtgcggttat
tcagtggcaccagtaaatttctacgcccctaagcagtgcccccaaccatggcaggctgac
tgccagccaacgcagggagctacctgtccttcaggatgggatgactgtactatgggttac
ccaagactggcctctcaagagcttgccttttaccatgcctacggtggcggctggcgaaac
cgatgcgattcacctggatgggacggaggacgcaccaacggatttgtgaatggtttccat
gacaaccgtacaaatgggggttttggagggcgcggaccccctcgcaatgatagaggtggg
cgtggcgcctaccgtggtaacaggggcggaggctcgtttaatcaaccattgcaaaataca
ggttttggaggctacgaaaacaaagacggaggctggggaggagctcctagagacgccgcc
tacaacagctttggagggcgcaacgatcggtccaagtctgcgttcttcaacgaccgtggg
gctggctccagaggaagatacgagcgcggggggttcggtggtggtgggaacagccgctgg
gtggaggactccagaggagaagatgactggtccaagcctactgcacccaatgagcgtctg
gaaaacgagcttttctctggaagcaacacggggataaactttgagaaatacgacgatatt
cccgtggaggcgactggaagcaactgcccaccacacattgagagttttcatgatgtggac
atgggggagatcatcatggggaacatcaccctgacccgctacacccgaccaactccggtc
cagaagcacgccattcccatcattaagattaagagagacctgatggcctgcgcccagacg
ggttctggtaaaactgctgctttcctgttgccggttctgagtcagatctacacagaaggg
ccaggagatgcactgcaagcctcaaagagcagtggacaggagaatggacggtacggccgt
cgtaagcagtaccccatctccctcgttctggctccaaccagagaactggctctgcagatc
tacgatgaggccaagaagttcgcctaccgctcccatgtacgtccctgtgtggtgtacggc
ggcgccgacatcggccaacagatccgggacctggaaagaggctgccatctactggtagcc
acaccgggacgtctggtggacatgatggagagaggcaagatcggtctggaccattgcaac
tacctggttctggacgaggctgaccgcatgttggacatgggctttgagccgcagatcaga
cgcatcgtggagcaggacacgatgccgcccaagggcatccgccagaccatgatgttcagc
gccaccttccccaaagagattcagatccttgctcgtgacttcctggaggactacatcttc
ctggcagtggggcgcgtcggttccacatcagagaacatcacacaaaaggttgtctgggta
gaagagaacgacaagaggtctttccttctggatctgctcaatgccacaggtaaagactcc
ctgaccctggtgtttgtggaaacaaagaaaggagctgatgctctggaagacttcctgtac
cgcgagggctacgcctgcaccagcatccatggagacagatctcagagggacagagaggag
gctctgcaccagttccgctctggacgctgcccaatcctggtggctactgctgtggctgct
cgaggtctggacatcagcaacgtgaagcacgtgattaactttgatctgcccagcgacatt
gaggaatacgttcaccgtatcggccgtacgggacgtgtgggcaacctcggtctggccacg
tcgttctttaacgacaaaaacagcaacataaccaaagatttgctggacattctggttgag
gccaagcaggaggttccttcctggctggagagcctggcctacgagcaccagcacaagagc
accagccgcggacgttccaagaggttctctggtggtttcggagccagagactaccgccag
gcatcgggtggctccggaggcttcaacagcaaccgctcaggacgcaacgctggcggtcac
ggaggaaaccgtggctttggtggaggtggcttcggcggcaacttctacaacgacggctac
ggcggaaattacaaccactctggtagcgtagattggtgggggaactaa
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