Xiphophorus hellerii (green swordtail): 116722668
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Entry
116722668 CDS
T07363
Symbol
rfc2
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03030
DNA replication
xhe03410
Base excision repair
xhe03420
Nucleotide excision repair
xhe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116722668 (rfc2)
03410 Base excision repair
116722668 (rfc2)
03420 Nucleotide excision repair
116722668 (rfc2)
03430 Mismatch repair
116722668 (rfc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xhe03032
]
116722668 (rfc2)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116722668 (rfc2)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116722668 (rfc2)
DNA replication proteins [BR:
xhe03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116722668 (rfc2)
DNA Replication Termination Factors
ELG1-RFC complex
116722668 (rfc2)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
116722668 (rfc2)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116722668 (rfc2)
Check point factors
HRAD17(Rad24)-RFC complex
116722668 (rfc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_22
AAA_14
AAA_16
RCF1-5-like_lid
Viral_helicase1
Mg_chelatase
AAA_24
Rad17
AAA_11
RuvB_N
AAA_19
nSTAND3
DEAD
AAA_assoc_2
MipZ
AAA_18
AAA_5
MeaB
ABC_tran
AAA_30
DNAX_ATPase_lid
AAA_28
AAA_25
NTPase_1
MCM
RNA_helicase
AAA_2
SLFN-g3_helicase
FtsK_SpoIIIE
bpMoxR
DUF815
Motif
Other DBs
NCBI-GeneID:
116722668
NCBI-ProteinID:
XP_032422733
LinkDB
All DBs
Position
1:31917597..31922318
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AA seq
357 aa
AA seq
DB search
MDVEMADRESDQKPSGSGVKTDTEAGESSSKSSGSSYELPWVEKYRPLKLNEIVGNEETV
SRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARTLLGAAMKDAVLELNASNDRGIDVVR
NKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKI
IEPIQSRCAVLRYAKLTDGQVLARLQEVVEQERLAVSDDGLEAVIFTAQGDMRQALNNLQ
STHSGFGYINSENVFKVCDEPHPLLVKSMLGHCVAGDVDAAYRVVEQLWALGYSPEDIMG
NIFRVCKTFQMAEYLKLEFIKEIGFTHMRVAEGVNSLLQMAGLLGRLCSKTAPPAAS
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atggacgtagagatggcagacagggaaagcgaccagaagccgagtggaagcggggtaaag
acggacaccgaggccggggagtcctcgtcgaaaagctccgggagttcctacgagctgccc
tgggtggagaagtaccggccgctgaaactgaatgaaatagttgggaacgaggagacggtg
agccgcctggaggtgttcgccagggagggaaacgtcccgaacatcatcatagcaggacct
ccagggacagggaagaccaccagcatcctgtgtttggcccgcactctgctgggggccgcc
atgaaggacgccgtgttggagctcaatgcctccaacgacaggggcatcgatgtggtgaga
aacaagatcaagatgttcgcccagcagaaagtcacgctgcccaaaggtcgacacaagatc
atcatcctagatgaagcggacagcatgacggatggcgctcagcaggcgctcaggaggatc
atggagatctactccaaaacgactcggttcgctctcgcctgcaacgcctccgacaagatc
atcgagccgatccagtcgcgctgcgctgtgctacgctatgccaagctgacggacggccag
gtgctggcccggctgcaggaagtggtggagcaagagcggctggccgtatctgacgacggg
ctggaggccgtcatcttcacagcacagggggacatgcggcaggcgctgaacaacctgcag
tccacccactctggctttggctacatcaacagcgagaacgtgttcaaagtgtgcgacgag
ccgcaccccttgctggtgaaaagcatgctgggacactgcgtggcgggggacgtggacgca
gcgtaccgggtggtggagcagctgtgggcgctgggctactcccccgaggacatcatgggg
aacatcttcagggtctgcaagacgttccagatggccgagtacctgaagctggagttcatc
aaggagatcggcttcactcacatgcgggtggctgaaggagtgaactccctgctgcagatg
gccggcctgctgggaagactctgcagcaagacggcgccccctgctgccagctga
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