Xiphophorus hellerii (green swordtail): 116722700
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Entry
116722700 CDS
T07363
Name
(RefSeq) probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xhe01002
]
116722700
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116722700
Enzymes [BR:
xhe01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
116722700
Peptidases and inhibitors [BR:
xhe01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
116722700
Ubiquitin system [BR:
xhe04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
116722700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
Vps23_core
Motif
Other DBs
NCBI-GeneID:
116722700
NCBI-ProteinID:
XP_032422784
LinkDB
All DBs
Position
7:complement(9687075..9724682)
Genome browser
AA seq
2634 aa
AA seq
DB search
MTATTRGSPVGGNDSQGQGQAPDAQSQPPLPQNQTSSPNSSNENSPVSPPDEQGQGEGPP
QLEEEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLSKKGLDVKCEACQR
FFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELLAMAL
NPHCKFHIYNGTRPSETVPAGAQLADDELYARPPDPRSPKGWLVDLINKFGTLNGFQILH
DRFMSGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLENLTDEELKKEA
KNEAKNDALSMIIKSLKNLASRVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNALNEV
NKVISSVSYYTHRHNPEEEEWLTAERMAEWIQQNHILSIVLRDSLHQPQYVEKLEKILRF
VIKEKALTMQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKASWTNA
SKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKILDYS
CSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLRKKMPINIQTNL
VSQTQRSPHVFYRHDLINQLQHNHALVTLVAENLSAYMETMRQLSKEEQAEFDPQTVRPG
SRYSHVQEVQERLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCDREACFKWYSKLM
GDEPDLDPDINKDFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAYMMDD
LELIGLDYLWRVVIQGSDDIANRAIDLLKEIYTNLGPKLQVNQVEIHEDFIQSCFDRLKA
SYDTLCVLDGDKDSINCARQEAIRMVRVLTVLKEYINECDSDYHEERTILPMSRAFRGKH
ITLIVRFPNQGRQVDDLDIWSHTNDTIGSVRRGILNRIKANAAHTKIELFIGGEIVDPAD
DRKLIGQLNLKDKTLITAKLTQVSANMPSSPDSSSDSSTGSPGNHGNHYSDGPNPEVESC
LPGVIMSLHPRYISFLWQVADLGCNLNMPQLRDGARVLMKLMPPDNTTVENLRAVCLDHA
KLGENSLSPSLDSRFFGPSPSQVLYLIEVVYALLMPASATLGEDASDFQYNFLKSGGLPL
VLSMLTRNNFLPSADMETRRGAYLNALKIAKLLLTAVGFGHVKAVAEACQPNADGNIPVS
PINQATHDQALVLQSALQNIPNPTSECMLRNVAIRLAQQISDENFFQASKYIPDICVIRA
VQKIVWASGCGTVQLVFSNNDEISKIYEKTNAAKEPDGEDEQVCCEALEVMTLCFALMPT
ALDTLSKEKAWQTFIIDLLLHCHSKSVRQMAQEQFFLMATRCCMGHRPLLFFITLLFTVL
GSTAKERAKHAGDYFTLLRHLLNYAYNSNINLPNAEVLLNNEIDWLKRIRDEVKRTGETG
VEETILEGHLGVTKELLAFQTPEKKYYIGCEKGGANLIKELIDDFIFPASNVYLQYMKSG
EFPTEQAIPVCSTPASINAGFELLVALAVGCVRNLKQIVDTLTDMYYLGCETLTEWEYLP
PVGPRPNKGFVGLKNAGATCYMNSVIQQLYMIPPIRNGILAIEGTGTDVDDDMSGDEKQE
NESNVDPRDEVFSYHHQFDDKPSSKSEDRKEYNIGVLRHLQVIFGHLAASRLQYYVPRGF
WKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPPMLSKVLGGSFADQKICQGC
PHRYECEESFTTLNVDIRNHQNLLDSMEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIK
KLPPVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDDVNPENQVI
QQNEPSEPTPPGSSKYRLVGVLVHSGQASGGHYYSYIIQRNGGDGEKNRWYKFDDGDVTE
CKMDDEEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDSLDKDSELVK
YISELNLSSTKPHQVKMPSVIECSVRKQNVQFMHNRMQYSLEYFQFIKKLLTCNSVYLNP
PPGQDHLLPEAEEIAMISAQLAARFLFSTGFHTKKLVRGPASDWYDALCILLRHSKNVRY
WFAHNVLFAYPNRFSEYLLECPSAEVRGAFSKLIVFIAHFSLQDGPCPSPTASPGSSTQG
CDNLSLSDHLLRAVLNLLRREVSEHGRHLQQYFNLFVMYANLGLAEKTQLLKLNVPATFM
LVALDEGPGPPIKYQYAELGKLYTVVSQLVRCCDVSSRMQSSINGNPPLPNPYGDTNLTA
PVMPVQQLVAEILFVRTSYVKKIIEDCSNSEETVKLLRFCCWENPQFSSTVLSELLWQVA
YSYTYELRPYLDLLLQILLIEDSWQTHRIHNVLKGIPDDRDGLFDTIQRSKNHYQKRAYQ
CIKCMVALFSNCSVAYQILQSNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPPV
QSNETSNGYFLERSHSARMTLAKACELCPEELKCTQESPGKEPDEQEAPDDQDSSPPEDT
SLYPHSPGTTQFQQNNHPHGQPYTGPAAQHMNNPQRPGPASAPTPGPTQTPTPGPGTAPS
SGPRAQETWDGTEEVAPAPAPALAPAPTPAPAPVPASAPASTSTSTPAPAPPKE
NT seq
7905 nt
NT seq
+upstream
nt +downstream
nt
atgacggccaccacgcgtggctctccggtggggggcaacgacagtcagggccagggccag
gcacctgatgctcagagccaacccccactgccacagaaccagacttcatctcctaattca
tctaatgagaactcccccgtgagcccaccagatgagcagggccagggcgaaggcccccct
cagctggaagaggaagagcctgcttttcctcacactgacttggcgaagcttgatgacatg
attaacaggcctcgatgggtggttccagttttgccaaaaggagagttagaagtcctcttg
gaagctgctatagacctgagtaaaaaaggactggatgtgaaatgtgaggcttgtcagagg
tttttccgggacggtctaaccatttccttcacaaaaatcctgacagatgaggcagtcagt
ggctggaagtttgagatacataggtgtatcattaataacacacaccgattggtggagttg
tgtgtggccaagctgtctcaggactggttcccgctactggagttgctggccatggccctc
aatccccactgcaagttccacatttataacggcacacggccttctgagaccgtccccgct
ggagcccagctggccgacgatgagctctacgctcgtccgcctgacccgagatctcccaag
ggctggctggttgatttaataaacaaatttggcacgttaaacgggtttcaaattttgcac
gaccgcttcatgagcggccaagcactgaacgtccagatcattgctgcacttatcaagcct
tttggccagtgttatgagttcctcacgttgcacacagtaaagaagtacttccttccagtc
atcgagatggttccccagtttctagagaacctcacagacgaggagctcaagaaagaggcc
aagaatgaagccaaaaacgacgcactgtcgatgataatcaagtctctgaagaatctggct
tctcgtgtaccagggcaggaggagacggtcaagaatttagagatttttaggttaaaaatg
attcttaggttattacaaatttcttcttttaacggcaaaatgaatgcactaaacgaagtt
aacaaggtgatctccagcgtctcctactacactcatcggcataaccctgaggaggaggag
tggctgaccgcagagcgcatggcggaatggatccagcaaaaccacatcctttctattgtg
ctgagggacagtttgcatcagccgcagtatgtcgagaagctggagaagatccttcgcttc
gttataaaagagaaagctcttaccatgcaggacttggacaacatctgggctgcacaggct
ggtaagcacgaggctattgtgaagaatgtccatgatctcttggccaagctggcgtgggac
ttctcacccgagcagctcgatcatcttttcgactgcttcaaggcaagctggaccaatgct
agcaagaagcagcgtgaaaaactgctcgagctaatccggcgcttggccgaggacgataag
gacggtgttatggcccacaaggtcctcaacctgctctggaacctggcgcacagcgacgac
gttcctgtagacatcatggatcaggctcttagtgctcacatcaagatattggactacagc
tgctcacaggacagagacacgcaaaagattcagtggattgatcgcttcatagaagagctt
cgtaccaatgacaagtgggttatccctgccttgaagcaaatcagggaaatctgcagcctc
tttggagaagctcctcagaacctgagaaagaaaatgccaattaacatacaaacgaactta
gtgagtcaaacgcagagaagccctcatgtgttttaccgccacgacctgatcaaccagctg
cagcacaaccacgctctggtcaccctggtggctgagaatctctcagcctacatggagaca
atgaggcagctgtccaaagaagagcaagcagagtttgaccctcaaacagtcagaccggga
agccgctacagtcatgtacaagaagtacaggagcggcttaactttctgaggttcctatta
aaagatggccagctgtggctgtgtgctcctcaggcgaagcagatatggaagtgtctggct
gagaacgctgtgtttctgtgcgaccgtgaggcctgcttcaaatggtactcaaagctgatg
ggggacgagccagacctagacccagacatcaacaaggacttctttgagaacaatgtgcta
cagttggatccgtcgcttctgacagagaacggcatgaagtgcttcgagaggttcttcaag
gccgtcaactgcagggagggcaagctggtagcgaaacgcagggcctacatgatggacgac
ctggaactaattggcttggactacctgtggagggtggtgattcaaggaagtgacgacatt
gcaaaccgagccatagacctgctgaaagaaatctacaccaatctcggaccaaaactgcag
gtcaaccaggttgagattcatgaagatttcatccagtcttgtttcgaccgtctgaaggcg
tcttatgacaccctgtgtgtgttagatggagacaaagacagcattaactgtgctcggcag
gaggccatccgcatggtgcgggttctcactgtgcttaaggaatacattaatgagtgcgac
agcgactaccatgaggagaggactatactgcctatgtcaagagctttccggggcaagcat
atcacactgatcgtccgtttcccgaaccaaggacgtcaggtggatgatttagacatctgg
tcacacaccaatgacaccatcggttcggtccggcggggaatcctaaacaggataaaggcc
aacgccgcacacacgaagattgagctgtttattggtggagagatcgttgatcctgctgat
gacaggaagctgattggacagcttaatttgaaggacaaaacgctgatcacagccaagctg
acccaggtgagtgccaacatgccctccagcccagacagctcatccgactcatccactggc
tcccctggtaaccacggaaaccactacagtgatgggcccaacccagaagttgagagctgt
cttcctggtgtgattatgtcgctacacccgcgctacatctcctttctgtggcaagtagct
gacctcgggtgcaacctcaacatgcctcaactaagagatggagctcgagttctcatgaag
ctcatgcctccagataacaccacagtggagaatcttagagctgtgtgtttggaccatgcc
aagctaggagagaatagtctgagtccgtcactagactcccgtttcttcggcccatcacct
tcacaagtgctctacctcattgaggttgtgtatgctttgctgatgccagctagtgccact
ctaggtgaggatgctagtgacttccagtacaacttcctgaagagcggcggtctgccactg
gtgctaagcatgctcaccaggaacaacttcctcccgtccgctgacatggagacgcgccga
ggcgcttacctcaatgctctgaagatcgccaagctcctcctgactgcggtcggcttcggc
cacgtgaaggctgtggccgaggcctgccaacccaacgctgacggaaatattcccgtctct
ccgataaatcaggcgactcacgaccaggcgctggttcttcaaagtgccctgcaaaacatt
cccaaccctacctctgaatgtatgttgcgcaatgtagctatccgcctggcccagcagatt
tctgatgagaatttcttccaggcatcgaagtacatcccagacatttgcgtgatccgagca
gtgcagaaaatcgtgtgggcatcgggttgtggcacggtgcagctggtatttagtaataat
gatgaaatcagtaaaatatacgagaagactaatgcagccaaggagccggatggagaagat
gagcaggtgtgctgcgaggctttggaagtgatgaccctgtgttttgccctcatgcctacg
gctctcgacacgctcagtaaggagaaggcttggcagaccttcatcatagacttgttgcta
cactgccacagcaagtctgtgcgtcagatggcccaagagcagtttttcctaatggcgact
aggtgctgcatggggcatcggcctcttcttttcttcatcaccctcctcttcacagtgctc
gggagcacagccaaagagcgagccaaacacgcaggggactacttcacgttgctccgacat
ctgcttaactacgcctacaacagtaacatcaacctgccaaacgccgaggtgctgctcaac
aacgagatcgactggctcaaacgaatacgggatgaggttaagaggacaggagaaactggt
gtggaagaaaccatcttggagggccacctcggtgtcaccaaagagcttctggccttccag
acgcctgaaaagaaatactacattggctgtgagaagggaggagcaaatctcattaaggag
ctgatcgacgacttcatcttcccagcatctaatgtttacctgcagtacatgaagagtggg
gagttccccacagagcaggccatcccagtgtgtagcactcctgcatccatcaacgccggc
ttcgagctcctcgtggcgctagcagtcggctgcgtccgcaacctcaaacaaatagttgac
accctaactgacatgtactacctgggttgcgagacactgacagagtgggagtacctgcct
cccgtgggaccacgccctaacaaaggctttgttggcctgaagaacgccggtgctacttgc
tatatgaactctgttatccagcagctttacatgatccctccaatccgcaacggcatcttg
gcgatcgagggcacaggcaccgacgtggacgatgacatgtctggtgacgagaagcaggaa
aatgagagtaatgtagaccctcgtgatgaagttttcagctaccaccaccagtttgatgac
aaaccctccagtaaatcagaggacaggaaagagtacaacatcggggtgctgcgtcaccta
caggtcatcttcggtcacctggctgcatccagactgcagtactacgtcccaagaggcttc
tggaaacagttcagattatggggggagccagtaaatttgagggagcaacatgacgctttg
gagttcttcaactctttggtggacagtttggatgaagctctgaaagctttgggtcaccca
ccgatgctcagcaaggtgctgggagggtcctttgctgaccaaaagatttgtcaagggtgt
ccccatagatatgagtgtgaggagtcatttacaacattaaacgtggacattagaaaccac
cagaacctgttggactcgatggagcaatatgttaaaggagatctgcttgaaggagccaat
gcctaccactgtgagaaatgcaataagaaggtggacacagtgaagcgtctactgattaag
aagctgccgcctgtcctggccatccagctgaagcgcttcgactacgactgggagagggag
tgcgccatcaagtttaacgactactttgagttcccgcgggagctggacatggagccgtac
acggtagcaggcgtggccaagctggagggcgacgacgtgaacccggagaaccaggtgatc
caacagaacgagccgtctgaacccacgccgccgggcagctccaagtaccgtctggtggga
gtgctggttcactcgggccaggcgagcggcggacactactactcctacataatccagcgg
aacgggggcgacggcgagaagaaccgctggtataagttcgatgacggcgacgtgacggaa
tgcaagatggacgacgaggaggagatgaagaaccagtgcttcgggggagagtacatgggc
gaggtgttcgaccacatgatgaagcggatgtcgtatcggaggcagaagcgatggtggaac
gcctacatcctgttctacgagcgtatggactcgctggacaaggacagcgaacttgtcaaa
tatatctcagagctgaacctgtcctccaccaagccccatcaggtcaagatgccgagcgtc
atcgagtgcagcgttcgcaagcagaacgtccagttcatgcacaaccgaatgcaatacagc
ctggaatatttccagttcattaagaaacttctgacctgtaacagtgtctatttaaaccct
cctccaggacaagaccaccttctgccagaggcagaggagattgctatgatcagtgctcag
ctggctgctcggttcctcttcagcacaggttttcacaccaagaaattagtacggggtcct
gccagtgactggtatgacgccctctgcatcctgctgagacacagtaagaatgtacgctat
tggtttgcacacaatgttctctttgcttaccccaatcgcttctccgagtacttgctcgag
tgcccgagcgcagaggttcgtggggcgttttccaagctcatagtcttcatcgctcacttt
tccctgcaagacggaccgtgcccctcacccacagcttcgccaggatcctccactcagggc
tgtgataatctcagccttagtgaccatctgttgagagctgtactcaacctgctcagaaga
gaggtttctgaacatggccgccacctccagcagtactttaacctctttgtcatgtatgcc
aatctgggtctggcagagaagactcagctactgaagctaaatgttcccgccacgttcatg
ttagttgctctggacgagggtcccgggcctcccattaagtaccagtatgctgagctgggc
aagctctacactgtggtctcccagcttgtccgctgctgcgacgtctcctcccgtatgcag
tcctcaattaatggtaatcctcctcttcctaacccgtacggggacaccaacctgacggct
cctgtcatgccggtgcagcagctagtggcagagattttgtttgtgcggactagttatgtg
aagaagatcattgaggactgcagcaactcggaggagacggtgaagctgcttcgcttctgc
tgctgggaaaaccctcaattttcctccactgtgctcagtgaactgctctggcaggtggca
tattcctacacctatgagctgaggccttaccttgacttgttgctacaaatcttactcatt
gaggactcctggcaaacgcacaggatccacaatgtgctgaaaggcatccccgatgacaga
gatgggctatttgacaccattcagcgctcgaaaaaccactaccagaaacgggcctatcag
tgcatcaagtgcatggtggccctctttagcaactgctctgtggcgtatcagatcctgcag
agcaatggtgacttgaagcgaaagtggacatgggcagtggagtggttgggggacgagttg
gagaggcggccatacacgggaaacccccagtacacgtacaacaactggtcccctccagtt
cagagcaacgagacctccaatggatattttcttgagcgctcccacagtgcacgcatgaca
ctggccaaggcttgtgaactctgtcctgaagagctcaagtgtactcaggaaagcccaggg
aaggagccagatgaacaggaagcacctgatgatcaagactcgtctccacctgaggacacc
tctctgtaccctcattctcctggaaccacccagttccagcagaacaaccacccccatggg
cagccgtacaccgggcccgctgctcagcacatgaacaaccctcagcgtcccggcccagcg
tccgccccgactccaggcccgacccagactccgaccccgggccccggtaccgctcccagc
tcgggcccgcgagcacaagagacctgggacggcaccgaggaggtggccccggccccggcc
ccggccctggccccggccccgaccccggccccggccccggtcccagcttcggccccagcc
tcaacctcgacctccaccccagcacccgcccctcccaaggagtaa
DBGET
integrated database retrieval system
