Xiphophorus hellerii (green swordtail): 116722726
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Entry
116722726 CDS
T07363
Name
(RefSeq) cadherin-4-like
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
116722726
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xhe04515
]
116722726
Cell adhesion molecules [BR:
xhe04515
]
Cadherins
Major cadherins
116722726
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
DUF2254
DUF5527
Motif
Other DBs
NCBI-GeneID:
116722726
NCBI-ProteinID:
XP_032422878
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All DBs
Position
1:complement(22172601..22444768)
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AA seq
934 aa
AA seq
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MRTDFAVVLTTALLFDTIWRNNGEHASQGPCRPGFSQSFYFVQISRDVLQGQGVLKGTPV
SPQKVKFDDCMGNEAVVFQSTDPVFNVRTDGSIFAKGQGASLDETVQFKVTARGPHTNVW
ETVVQLTLIDLSSSGQNENEVTEEAGNISEQNKKKDASQAPTPVIMFPGSHVNSTRGLRR
QKRDWVIPPINVAENSRGPFPQMLVSIRSDQDQNIPIRYSITGVGADQPPNEVFSIDPAL
GKMFVTKPLDREHRSSYHLRAHAVDINGNQVENPIDLYIFVIDMNDNRPEFKNQVYNGSV
DEGSKPDTYVMHLSAFDADDNTTANGMVHYRILSQTPHSPIPNMFTIKSETGDITTAAPG
LDREKVSQYTIIVQATDMEGNLNFGLSNTATAIITVTDINDNPPMLTSGTFSGEVPENTV
DVAVANLTVIDADQPHSPNWNAVYRIISGDPTGHFTIRTDPISNNGMVTVVKPVDFEMNR
SFMLTVVVSNQAHLASGIQSSLQSTAGVIISVKDVNEPPYFPTNPKQIRFEEGVPTGTSL
TTFSASDPDRLQMQQIIRYSKLNDPANWLSINRTSGQIVTTGMLDRESVYVKNNIYEATF
LATDNGSPEASSTGTLQIYLIDINDNPPALVPRESQICERMNKNVNGVNITAADADTDPN
AGPFVFELPNFPSSIRRNWTIARINGDYARLALRYQIYLEPGMYEVPIIVSDSGNPPLSN
RSVIKVKVCPCDENGDCTTLGAVAAAGLGTGAIIFILICIIILLCMVLLFVVWIKRREKE
RQTKQLLIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPDSLEHIISKPPGVRRVDER
PIIPESQYPIRPVVPHPGDIGDFIHEGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSS
LNSSSTGDQDYDYLNDWGPRFKKLADMYGGGDDD
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgaggactgacttcgcagtggtcctgacaacagctcttctttttgatacaatttggagg
aataatggggagcacgcctcccaaggtccctgtcgacctggcttctcgcaaagcttctac
ttcgtccagatatcgagggatgtactgcaaggccagggcgtacttaaaggtactccagta
tcaccgcaaaaagtgaagtttgacgactgcatggggaatgaggccgtggttttccagagc
accgacccggtcttcaacgtccggacagatggatccatctttgccaagggacagggagcc
agcttggatgagacagttcagtttaaagtgacagcgcgtggccctcacacaaatgtctgg
gagactgtggttcaactgaccctgattgacctgtcgtcatcagggcaaaatgaaaatgag
gtcacagaggaagcagggaacatcagtgagcaaaacaagaagaaggacgcgtcgcaggca
ccaactcctgtcatcatgttcccagggtcccacgtcaacagcaccaggggtctccgaagg
cagaagagagactgggtgatcccaccaatcaacgttgcagaaaattctcgtggaccattc
cctcagatgctcgtcagtattcgttccgaccaagaccagaacattccaatccgatacagc
attactggggtgggagcagatcaaccacccaatgaggtgttcagcatcgaccctgcgctc
ggaaagatgtttgtcaccaaacctctggatcgagaacatcgatcttcttatcatctgcgg
gcccatgcagtggacataaatgggaaccaggtcgagaatccgattgatctgtacatcttc
gttatcgacatgaatgacaacagaccagagttcaaaaaccaggtctacaatggttctgtg
gatgaaggttctaaaccagatacttatgtaatgcatctatctgcatttgatgccgatgac
aacaccacagctaatggaatggtgcactatcggatcctgtcccagacaccgcacagcccc
atccctaacatgttcaccatcaagagtgagacgggggacattacgacagcggcgcctgga
ctcgacagagagaaagtgtcccagtacaccatcattgtgcaagccacagacatggaggga
aacctcaactttggcctttccaacacagccactgccatcatcactgtcacggacatcaac
gataaccctcccatgctgacctcaggaactttttctggcgaggtcccagagaacacagtg
gatgttgcggtggctaatctgactgtaatagatgctgaccagcctcattctcctaactgg
aacgccgtttacaggatcatcagtggggacccaactgggcactttaccatccgcactgat
cccatttccaataacggcatggtcaccgtggtgaagccagtcgatttcgagatgaaccgg
tccttcatgctgacagtggtcgtgtcaaaccaggcccacctggccagcggcatccagtct
tcactccagtcgactgctggagtcatcatatctgtgaaggacgtcaacgagcccccttac
ttccccaccaaccccaaacagatccgattcgaggaaggcgttcctactggcaccagcctg
accactttctcagcctcagatcctgacagactccagatgcaacagataatcaggtattca
aagctgaacgatcccgcaaactggctgtctattaacagaaccagcggtcagattgtaaca
actggaatgctcgaccgggagtccgtctacgtaaaaaacaacatatacgaagctactttt
ctggctacagacaatggctctcctgaagccagcagcacaggcacattgcagatctatttg
atagatattaatgacaaccccccggcgctcgtaccaagggagtctcagatctgcgaaagg
atgaacaaaaacgtcaatggtgtcaacatcactgccgccgatgctgacacggatcccaat
gctggaccctttgttttcgagctgcccaacttccccagcagcatccgacgcaactggacc
attgcacggatcaatggtgattatgcccgtctcgctcttcggtaccagatctacttagaa
ccaggaatgtacgaggtccctatcattgtgtcagactctggcaaccctccgttgtccaac
aggtctgtcatcaaagtgaaggtttgtccttgcgatgaaaatggagactgtaccacactt
ggtgctgtcgcggccgctggcctggggactggagccatcatcttcatcctaatttgcatc
atcatactgctgtgcatggtgctgttgtttgtggtatggatcaagcgcagggagaaagag
aggcagacgaagcagttgctgattgaccctgaagatgacgtccgagacaacatcctcaaa
tacgacgaggagggcggaggagaagaggatcaagactacgacttgagccagctgcagcag
cccgactctttagaacacatcatcagcaagccgcctggcgtacgcagagttgacgagagg
cccatcatcccagagtctcagtaccccattagaccagttgtgccccatcctggagacatt
ggagactttatccatgagggtctgcgggctgcagacaacgaccccacagcgcctccgtat
gattccctgctcgtttttgactatgagggcagcggctccaccgccggctcagtcagctcc
ctcaactcttccagcacaggagaccaggactatgactacctcaacgactggggaccccgt
tttaagaagttggctgacatgtatgggggtggggatgacgattaa
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