Xiphophorus hellerii (green swordtail): 116722879
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Entry
116722879 CDS
T07363
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116722879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116722879
Enzymes [BR:
xhe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116722879
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116722879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
PRY
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
Ig_DSCAM-DSCAML_C
zf-RING_5
Pur_ac_phosph_N
NDNF
Inhibitor_Mig-6
Phage_T7_55
Motif
Other DBs
NCBI-GeneID:
116722879
NCBI-ProteinID:
XP_032423142
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Position
7:15550418..15590634
Genome browser
AA seq
689 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTPSEPIQSISAFQCPTCR
YVITLNQRGLEGLKRNVTLQNIIDRYQKASLSGPNSPSETRRERVIPEGKAMTSPMDRVQ
CQFCEQEPPQDAVKTCVTCEVSYCEECLKATHPNKKPFTGHRLIEPLQDSHLRGLMCLEH
EDEKVNMYCVTDEQLICALCKLVGRHRDHQVAALSDRYDKLKKSPGRLLCAGNDQSYQET
DQQALDSNLSSLIKRTSELESLMGKLIQTCQNVEVNASRQENKLQEECDLLINIIQHRRQ
IIATKIKEGKAMRLRKLSQQIAGCKQCVERSSSLITQADQTLKESDHARFLQTAKSICER
VSMATASSQILLPEINLNDAFDTFALDFTREKKMLESLDYLTAPNPPSIREELCTASYDT
ITVHWTSDDEFSVISYELQYAIFTSQSNVVSLCNSVDSWMIVPNIKQNQYTVHGLQCGTN
YIFIVKAINQAGSRSSAPGKLKTNSQPFKLDPKSAHRKLRVSHDNLTVERDETSSKKSHS
QERFSSHSSYGVTGNVYIDSGRHYWEALIGGSTWFAVGIAYKSAPRHEWVGKNSASWVLS
RCNNSWVVRHNSKEIPIEPSPHLRRLGILLDYDSGSLSFYDAVASQHLYTFDIDFVHPVC
PVFNVWNRCLTVLSGLPIPDHLESTDFNH
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggaaacactagagtctgagctgacctgcccaatctgtctggagctttttgaggaccca
ctgctgctgccctgtgctcacagtctttgtttcaactgtgcccatcgtatcttggtctcc
cattgcacccccagcgagcctatccagtctattagcgccttccagtgtccaacttgtcgc
tatgtcattactctcaaccagagaggcctagagggactcaaacgcaacgtgaccctacag
aacatcatcgaccgctaccagaaagcctctttaagtggacccaactcccctagtgagact
cgtcgtgagcgagtgatcccagaaggcaaagccatgacatctcctatggaccgagtgcag
tgtcagttctgcgagcaggaaccccctcaggatgcagtgaagacctgcgttacctgtgag
gtatcgtactgcgaggaatgcctcaaggccacccacccaaacaagaaacccttcacaggc
caccggctgattgaacccttgcaggactcccatctccggggactcatgtgtctggagcac
gaggacgagaaagtcaacatgtactgtgtaacagacgaacagttgatctgtgctttgtgc
aaacttgtcggccgacatcgagaccaccaagtggcggcccttagcgaccgatatgacaaa
ctcaagaagtctcctggccgccttctctgtgcggggaatgatcaatcataccaggagacg
gaccagcaagcattggactccaacctcagcagcttaatcaaaaggaccagtgaattagaa
agtttgatggggaaacttatccaaacctgccagaatgtggaggtaaatgcctcgcggcaa
gaaaacaagctacaggaggagtgtgacctgctgattaatatcatacagcatcgaagacaa
ataatagcaacaaagataaaggagggaaaggccatgaggctgaggaagctctctcaacag
atagcgggctgtaaacagtgcgtcgagagatcgtcctccctcatcactcaggctgaccaa
acccttaaggagagcgaccacgcccgcttccttcagacagctaaaagtatctgcgagaga
gtctctatggcaacagcatcctctcagatactgttaccagaaattaacctgaacgatgca
tttgatacttttgctctggacttcacgagagaaaagaaaatgctagaaagtttggattac
ctcacagcaccaaatccaccgtcaattcgtgaggaactgtgtacagcttcgtacgacacc
atcacggttcactggacatcagacgatgagttttctgttatttcatatgagcttcagtat
gccatcttcaccagccagtctaatgttgtcagtctgtgtaactctgttgatagttggatg
attgtcccaaacattaagcaaaatcaatacaccgtgcatggactccaatgtggcaccaac
tacattttcatagtgaaggccataaaccaggctggaagccgcagtagcgccccggggaaa
ctcaaaaccaacagccagccattcaaattggacccaaagtctgctcatcggaagctaagg
gtatctcatgataaccttacggtggagagagatgagacatcatctaaaaagagccacagt
caggagcgcttctccagtcacagcagctacggggttactgggaatgtctacatagacagc
ggccgccattactgggaagctctgattggaggaagcacatggtttgctgtggggattgct
tacaagtctgcaccaagacacgagtgggttggcaagaactcggcctcctgggtactctcc
cgctgcaacaactcgtgggtggtgcgccacaacagcaaggaaatccccatcgagccttcg
ccccacctgcggcgccttgggatattgttggattacgattcggggtcgctctccttctac
gatgctgtggcctcgcagcacttgtacacatttgacattgactttgttcatccagtctgc
ccggtgttcaatgtttggaatagatgtttgacagtcctcagtggactgcccatacccgat
catttggagagcacagactttaaccactga
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