Xiphophorus hellerii (green swordtail): 116723137
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Entry
116723137 CDS
T07363
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116723137 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xhe03041
]
116723137 (sf3b1)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116723137 (sf3b1)
Spliceosome [BR:
xhe03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116723137 (sf3b1)
Complex B
116723137 (sf3b1)
Complex C
U2 SnRNP specific factors
116723137 (sf3b1)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
116723137 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
116723137
NCBI-ProteinID:
XP_032423671
LinkDB
All DBs
Position
7:3199504..3228425
Genome browser
AA seq
1315 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLQEENGEQGVGLVSTGFYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEDDTSTSLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKIADREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMMEQNLSKEEREIRLQLAEKAKS
GDLKAVNGSAASQAAAKRKRRWDQTADQTPSNSTPKKLSSWDQADAGTETPGHTPAHTPS
NSRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVR
KNRWDETPKTERETPGHGSGWAETPRTDRGEESVGETPTPGASKRKSRWDETPASQMGSS
TPLLTPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFP
EGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKP
DDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYA
RVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLK
AVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAI
AALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREV
MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRN
YRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLE
EQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKM
TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAH
KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL
PALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
AVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVALGPCRMLQY
CLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNVYVRYELEYVL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgaagatatcgaggcccagatcctggagatccagggg
atgaaggccaccctgcaggaggagaatggcgagcagggtgtgggtctggtctccactggc
ttctacgaccaggagatctacggcggcagcgacagccgcttcgctggatatgtcacttca
atcgcagccaatgagcaggaggacgacgatgaagacgacacgtccactagcctactgggg
cagaagaaacctggctaccacgcgccggtggcaatactcaactccatccctcagtcggat
gagcagtacgacccgttcgcagaacatcggccgcagaagatcgccgatcgggaggacgag
tacaaagcccgccgcagacagatgatcatctcgcccgagcgtctcgacccttttgctgac
gggggcaaaacaccggaccccaagctgcaggtcaggtcgtatgtggacgtgatgatggaa
cagaacctgtccaaagaggagagggaaattcgtctgcagctggcagagaaggccaagtcg
ggggatctgaaagctgtcaatgggtctgctgcctctcaagctgctgccaaacgaaagcgc
cgctgggaccagacagctgaccaaactccgtccaactccacacccaaaaaactgtccagc
tgggaccaggcagacgccgggactgagactccaggacacactcctgcacacacaccttcc
aacagccgctgggatgaaactcccggccgcccgaagggcagtgagaccccaggggccacg
cccagcacccgtatgtgggaccccacccccagccacacccctgccggcgccgccacgcct
ggccgggatacgccaggccacgctacgcccggccacggcggcgccacggggagtgtccgc
aagaaccgctgggacgaaaccccaaagacggagcgcgagacgccaggacacggcagcggc
tgggccgagacgccgcgcacggacagaggggaggagtcggtgggggagaccccgacccca
ggagccagcaagaggaagtctcggtgggatgaaacgcccgccagccagatgggctcctcc
acaccgctgctgacgcctggaaaaactccattaggaacgccagccatgaacatggccaca
cctacacccggacacctgatgagcatgaccccagagcagctccaggcctggcggtgggaa
cgggagattgatgagaggaaccgacctctgaccgatgaagagctggacgccatgttccca
gaaggatacaaggtgttgcctcctccagcggggtacgtaccgatccgtaccccggcccgt
aagctgtcggccactcccaccccaatcggaggcatgacgggcttccacatgcaggccgag
gaccggaccaccaagcagatgaacgaccagccctcaggaaacctccccttcctcaaacct
gatgacattcagtactttgacaaactgctggtggaggtggatgaatcaactctgagcccc
gaggaacagaaggaaaggaagatcatgaagctgctgctgaagattaagaatggaactcct
cccatgagaaaggccgctctgcgccagataaccgacaaagctcgcgagtttggagcaggt
ccgctcttcaaccagattctgccgcttctcatgtcccccaccctggaagaccaagagcgc
catctgctggtcaaagtcatcgaccgcatcctctacaaactggacgacctggtccggccg
tacgtacacaagatcctggtggtgatcgagccgctgctgatcgatgaggactactacgcc
agagttgaaggcagagaaatcatctccaacttggcgaaggctgccgggttggccacgatg
atctctacgatgcgacccgatatcgacaacatggacgagtacgtcagaaacacgaccgct
cgagccttcgccgtggtggcctccgccctcggcattccctcgctcctccccttcctcaaa
gccgtgtgcaaaagcaagaagtcgtggcaggccagacacacgggcatcaagatcgtgcag
cagatcgccatcctgatgggctgcgccatcctgcctcacctgcgcagcttggtggagatc
attgaacacggtctggtggatgagcagcagaaggtgaggaccatcagcgctctggccata
gctgccctggccgaggccgccactccctacggaatcgagtcgtttgattctgtgctgaag
ccgctgtggaagggcatccggcagcacagaggaaagggtctggctgcgttcctcaaagct
attggctacttgatccccctgatggacgccgaatacgccaactactacaccagggaggtg
atgttgattctcatcagagagttccagtctcctgatgaggagatgaagaagattgtgctg
aaggtggtgaagcagtgttgtggcacggatggtgtggaagcaaactacatcaaaactgag
atcctgcccccgttcttcaagcacttctggcagcacaggatggctctggacagacgcaac
tacagacagctggtggacaccaccgtggagctggctaacaaagtgggagcagccgagatc
atttcccgcattgttgacgacctgaaagacgaggcggagcagtacaggaagatggtgatg
gagaccatcgagaagattatggggaacctgggagccgctgacattgaccacaaactggag
gagcagctgattgacggcatcctgtacgccttccaggagcagactacagaggattctgta
atgctgaatgggttcggtacagtggtgaacgccctggggaagcgcgtgaagccatacctg
cctcagatctgcggtacggtgctatggcgtctgaacaacaagtcggccaaagtccgccag
caggcggccgacctcatttcccgcacggcagtggtgatgaaaacctgtcaggaggagaag
ctgatgggtcacttgggcgtggttctgtacgagtacctgggagaggagtaccccgaggtc
ctgggcagcatcctgggagcactgaaggccattgttaatgtcataggtatgcacaagatg
actccaccaatcaaagacctgcttcctcgtttgacgcccatcctgaagaaccggcatgag
aaggttcaagagaactgcatcgacctggtgggccggattgctgataggggtgctgagtac
gtgtcagccagagagtggatgaggatttgctttgagttgcttgagttactcaaagctcac
aaaaaggcaatccgcagagctaccgtcaacacgtttggttatattgccaaagccatcggg
cctcatgacgtgttggccactctgctgaacaacctgaaggtccaggagcgtcagaaccgc
gtgtgtacaaccgtggccatcgccatcgtggcggagacctgttcgccgttcacggtgctg
ccggcgctcatgaacgaatacagagtgcctgagctgaacgtgcagaacggcgtcctgaag
tcgctctcgttcctgttcgagtacatcggagaaatgggaaaagattacatctacgctgtc
acacctctactggaggacgcattaatggacagagatttggtccacagacagaccgccagc
gccgtcgtccagcacatgtctctgggtgtctacggttttggctgtgaagactcccttaac
catttactgaattatgtgtggcccaacgtttttgagacgtctccccacgtcatccaggct
gttatgggtgccctggaggggctgagagtggccctcggcccctgccgcatgctgcagtac
tgcttacagggtctgttccatccggcccggaaggtgagagacgtctactggaagatttac
aactccatctatattggttcccaggacgccctgattgctcattacccacaggtctacaac
gatgagaagaacgtctacgtccgctatgagctcgaatacgttttgtaa
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integrated database retrieval system
