Xiphophorus hellerii (green swordtail): 116723189
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Entry
116723189 CDS
T07363
Symbol
col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xhe04147
]
116723189 (col18a1)
00535 Proteoglycans [BR:
xhe00535
]
116723189 (col18a1)
00536 Glycosaminoglycan binding proteins [BR:
xhe00536
]
116723189 (col18a1)
Exosome [BR:
xhe04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
116723189 (col18a1)
Proteoglycans [BR:
xhe00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
116723189 (col18a1)
Glycosaminoglycan binding proteins [BR:
xhe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116723189 (col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
116723189
NCBI-ProteinID:
XP_032423787
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All DBs
Position
7:30445070..30518538
Genome browser
AA seq
1370 aa
AA seq
DB search
MRSWFKVLPLLTLWVVYSEAWFWSWSETGTTLAPGLELEGSGIATGSGEPLSESSTTAGA
EIIDEGHVLQTVGQTWDETTEGPRVTTVVPSTPPERGRGVGQTTAGTTSRRTKPEDSGVS
LLQLIGDPPPEKILEVDGPDNSPAYLFGPESATGQLARAHFPNPFYRNFALIFSLKPTSD
DGGIVFSITDSSQQIMHLGVKLSAVQGSEQNVVLFYSQVGARQSKEAARFRVPSMTNAWN
RFAVAVKDDKAMLYLNCDVEPQVMRMERSAGELKLESGSGVFVGQAGGEHPDKFKGAISE
LRVVGDPSAAARFCEEDDDSDMASGEGSGYGETRRPKPFSEKPQQTTADESLPPIQQPPL
ERTGQRAQAGAAAAKGEKGDRGDRGEKGDQGPSGPKGDTGSGSQGGNRGLKGEPGEKGAK
GSAGFGYPGSKGEPGLPGPPGPPGSPGPANEYSVDRDGSVVSKVPGPRGPPGPAGPQGPP
GEDGEPGDPGEDGKTGPQGPPGFPGTPGDAGVKGEKGDRGAGQPGLRGPPGPPGPPGTGY
RSTFEDMEASGFPDLVSVRGLPGPPGPPGPPGPPGLSSTSTSVNSGAFGPPGKDGAPGQP
GLPGLPGADGLPGAPGPRGEKGDSGDLGLPGAIGQKGSLGEPGLPGPTGEPGLAGLPGPM
GPVGPPGPPGPPGPGHRVGFDDMEDSSGIYTNGLPGVRGPEGIQGPPGSPGHPGKPGFPG
SQGPKGEQGLAGRDGLPGLDGFPGPPGQKGDRGDKGETGDPGRDGTGLPGPPGPPGSPGQ
IIYQPSDNGVAGLPGRAGFPGPVGPKGDRGDPGSPGYGLKGEKGEPGLMIGPDGNPLYLG
GLTGTKGDRGLPGIIGPSGPQGPPGLKGEIGMPGRPGRPGVNGYKGEKGEPAGGAGYGYP
GVAGPPGPPGPPGPPGPAIALDRFNRFDENSRGYQVVKGEKGEHGSPGIPGTASNFDIYT
FKNELKGDQGDPGVKGEKGEPGGGYYDPRFGGPVGPPGPPGNPGLPGPKGESIAGPPGPS
GPSGPPGVGYDGRPGPAGPPGPPGPPGNPSFSGTYRPNYPVSVPGPPGPPGPPGSPGLSS
GVTVLRSYDILIATARQQPEGSLIYILDKADLYLRVRNGLRQVLLGDYRTFFGDLGNEVA
EVQPPPVVVYPHTPERTSNNGEGHYSQSSAVIRPIEPPLRQPSPPVVPAADSSESGLHLV
ALNAPQTGNMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYTIVRRSDRNGVPIMN
LKNQVLFSSWESIFSEDSNKMRENVSLYSFDGRDILRDSAWPEKMVWHGSSKKGHRQMDH
YCETWRAGEHAVTGLASSLQSGRLLQQTPSSCSGSYIVLCIENAFTSPSK
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgaggagctggtttaaggttttgccccttctgaccctgtgggtggtctactccgaggct
tggttctggtcctggagtgagaccggcacaacgttggcgcccgggttagaactggagggt
tctggcattgcgacaggtagcggagagcctctatctgagagcagcaccacagctggagca
gagatcattgatgaaggacacgtgctccaaacagttgggcagacttgggatgagaccact
gaaggtcctcgagtgacgactgtagttccttcaacgccaccagagagggggcgtggagtg
ggacaaaccaccgcagggacaacatcacgcaggactaaacccgaagacagcggtgtgtcg
ctgctgcagctgatcggcgatcctcctccagagaagatcctggaggtggatggcccggac
aacagccccgcctacctgttcgggccagagtccgccacgggccagctggcccgtgcccac
ttccccaaccccttctacaggaacttcgccctcatcttcagcctgaagcccacctccgat
gacggcggcatcgtcttctccatcaccgactcttcgcagcagatcatgcaccttggcgtc
aagctgtcggccgttcagggatcggagcaaaacgtcgttttgttctacagccaggtcggc
gcccggcagtccaaagaggcggccaggttccgcgtgccgtccatgacgaacgcctggaac
cgcttcgctgtggctgtgaaggacgacaaggccatgctgtacctgaactgtgacgtggag
ccgcaggtgatgcggatggagcgatcggcgggggagctgaagctggagtcggggtctggg
gtgttcgtgggccaggctggaggggagcatcctgacaaatttaagggcgccatcagcgaa
ttgcgggtggtgggagaccccagcgccgcagcgcggttctgcgaggaggacgacgactcc
gatatggcttcaggagaaggaagtggctacggagaaaccagacggccaaaacctttcagt
gagaaacctcaacagacgacagccgatgagtctcttcctccaatccaacagccgccgctg
gagcggaccgggcagagggcacaagcaggtgcagctgctgctaaaggagaaaaaggcgac
agaggggacagaggagagaaaggagatcaaggcccgtcggggccgaagggagacacaggc
tccggctcccaagggggaaaccgcggactaaagggagaaccaggtgaaaaaggagcaaag
ggcagtgcaggttttggatatccgggttcaaagggtgaaccaggccttcccggaccacca
gggccccctggatctccaggacccgcaaacgagtattcagttgaccgagatgggtcggtt
gtttcgaaggttcctgggccgcgcggaccgcctggaccggcagggcctcaggggccacca
ggagaagatggagaaccaggtgaccccggtgaagatggaaaaactgggcctcagggacct
ccagggtttccaggaactccgggtgacgcaggagttaaaggagagaagggcgaccgtgga
gcgggccagcccggcctcagaggacccccagggcctccaggaccaccgggtacaggatac
agatctacattcgaggacatggaggcctctggattccctgatttggtctccgttcgggga
cttccaggtcccccaggtcctcccggtcccccaggtcctcccggtctttcctcaacaagc
acgtccgtgaactctggagcttttggacctccaggaaaagatggagcacctggccaacct
ggtctgcctggtttacctggtgctgatggtcttccaggagctcctggtcccaggggagaa
aagggggattcaggtgatcttggactcccaggagcaattggacaaaagggatctctagga
gaacctggtttaccgggacctacaggagagcctggactggctggtctgccaggacccatg
ggaccagttgggcctcctggacctcctgggcctccaggaccaggtcatcgggttggattt
gatgacatggaggactccagtgggatttacactaatggacttcctggtgtcagaggacca
gaagggatacagggacctcctggttcacctggacacccaggtaaacccggtttcccaggt
agtcaaggtccaaagggtgagcagggtctggcaggaagagacggactaccaggcctggat
ggcttcccaggaccgccgggacaaaagggtgacagaggtgacaaaggagagacgggtgat
cccggtcgagatggaaccggactcccaggcccacctggtccacctggatcaccgggacaa
ataatctaccagccatctgacaacggagtggctggtttacctgggagagctggatttcct
ggtcccgttggaccgaagggggacagaggtgaccctggttcaccaggttatggcctgaag
ggtgaaaaaggggagccaggcttgatgattggaccagatggaaatcctttgtatctggga
ggcctaacaggcaccaagggagacagaggactgccaggaattattggaccttctgggcct
caggggcctcctggactgaaaggtgaaataggaatgccaggaagacctggtcgtccaggt
gtgaatggatacaagggtgaaaaaggagagccagcagggggtgcaggttacggctacccg
ggagttgccggcccaccaggacctccaggacctcccggaccaccaggtccagccattgct
ctagatcgctttaatcgctttgatgaaaactcgaggggttaccaagtggtaaagggagaa
aaaggagagcatggatctcctgggatcccaggaactgcgtcaaactttgatatctacaca
tttaagaatgagctgaagggagaccagggagatccaggagtgaagggggagaaaggagag
ccaggtggtggatactacgacccacgttttggaggaccagtgggcccaccaggacctcca
ggaaacccaggattaccagggccaaagggagagtctatagctgggcctcctgggccatca
ggaccttctggaccaccaggtgttggctatgatggccgtccaggaccagcaggaccacct
ggacctccaggacctcctgggaatccctcattttctggaacatacagacctaattatcct
gtcagcgttcctggacctcctggtccgccaggcccacctggaagccctggcctctcctct
ggggtgacggtgttgaggtcatatgacatcctgattgcgacggccaggcagcagccggag
ggaagtctcatttacatcctggacaaagcagacctctatctgagagtgcgcaatggactt
cgacaagtcctcctcggagattacaggaccttctttggagatctgggcaacgaggtggca
gaagtgcagcccccaccggtggtggtgtacccccacaccccagaacggacttccaacaac
ggagagggccattactcccagagcagcgcggttatccgacccattgaacccccgctgcgg
cagcccagcccccctgtggtgccagctgctgactcgtcagaatcaggactccacctcgta
gcgttgaacgcgccccagaccggcaacatgcgagggattcgcggggcggacttcctgtgc
ttccagcaggctcgcgctgttggtctgaagggaactttcagagccttcctgtcctccaag
cttcaagacctctacaccatcgtccgcaggtcggacaggaacggagtccccatcatgaac
ctgaagaaccaagtgttgttcagcagctgggagtccatcttcagtgaggacagcaacaaa
atgagagagaatgtatcgttgtactcgtttgacggcagagacatcctcagggacagtgca
tggccagagaagatggtctggcacggatcgagcaaaaagggccaccggcaaatggatcat
tactgtgaaacgtggcgagcgggcgagcacgctgtgacgggcctggcgtcgtccctgcag
agcggccgcctcctgcagcagacgcccagcagctgctccggctcctacatcgtcctctgc
atcgagaacgccttcacgtcgccctccaaataa
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