Xiphophorus hellerii (green swordtail): 116723339
Help
Entry
116723339 CDS
T07363
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116723339 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xhe03041
]
116723339 (prpf40a)
Spliceosome [BR:
xhe03041
]
Complex A
U1 snRNP components
U1 related factors
116723339 (prpf40a)
Complex B
116723339 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
116723339
NCBI-ProteinID:
XP_032424053
LinkDB
All DBs
Position
7:19428690..19444594
Genome browser
AA seq
883 aa
AA seq
DB search
MSSTETNNGPSQAAPYAAVPPAAIPPPYMGPPGIPPHFPPMGIPPMGQRPPSMTPLPPGI
MPPGIMPPMAAPPMGQMPSMIPPMIPGMMLPPRIPAATVQPTGPPGVDTTVPAAAAPGTT
NATNGSPSEEQPKKKSVWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCPWK
EYKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEESGTTETAAPGTTAAPTVQADKN
TAAMATVKEVETAVVVPEEQQSQVTAHQTAEVKAVEAPVTSSESAVIAESKPSVEVKEEE
RPELQKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKLIINDPRYSALPKLSEKKQ
AFNAYKVQTEKEEKEEARIKYKESKEKFQRFLENHEKMTSTTRYKKAEQMFNELEVWSCV
PERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLD
NPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEDKQKTLLRERRRQRKNRESFQKFLD
ELHDHGQLHSMSSWMEMYPTLSSDMRFSSMLGQPGSTPLDLFKFYVEDLKARYHDEKRII
KDILKDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEE
ARKMKRKEAAFKTMLKQATPPLEPEASWEEVRERFLKEAAFEDVTLESERKRIFKDFMHV
LEHECQHHHSKTKKHSKKSKKHHRKRSRSRSASESEEEEYHKKKKRSQSKSPSERSSSGE
SERSYKKSKKHKKKGKKRRHKSASPDSDGEKKGRERDGKRERDSEKDKENDKTRGKSRSE
SKQKSPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaacggagacaaataatggcccaagccaggcggcaccttatgcagctgtcccc
cctgcagccataccgcctccatatatgggaccaccaggaataccacctcacttcccaccc
atgggaataccccctatggggcagcgacctcctagcatgactccattgccacctggaata
atgccaccaggcataatgccaccaatggctgctccaccaatggggcagatgccaagcatg
ataccgcccatgatcccgggaatgatgctgcctcctcggataccagctgcgaccgtacag
ccaacgggaccccctggtgttgacaccacagtccctgcagcagctgcacctggaacaact
aatgcaacaaatggatccccttcagaagaacagccaaagaagaaatctgtgtggacagaa
cacaaatctttagatgggaaaacatattactataatacagaaaccaaacagtccacatgg
gagaaaccggatgaactgaaatctcctgcagagcaaatgctgtctaaatgcccctggaag
gagtacaagtctgacacagggaagccttattattacaactctcagacaaaggagtccaga
tggaccaaacccaaggagctggaggatctggaggctatgatcaaagcagaggagagtgga
acaacagagactgcggctcctggaacgactgccgctcctacagtgcaggccgataaaaat
acagccgccatggcgaccgtaaaggaggtggaaactgcagtggtggtcccagaggagcag
cagtcccaggtgaccgcacatcaaacagctgaggtcaaggctgtggaggcacctgtgact
tcctcagagagcgctgtcattgcagagagcaaacccagtgtcgaagtcaaagaagaagag
cgacctgaacttcagaagaaaacctataagtggaacacaaaagaagaagccaagcaggcc
ttcaaagagctgctgaaggagaagggtgtttcctcaaactcctcatgggaacaggccatg
aagctgattatcaatgatcctcgctacagcgctcttcccaaactgagcgagaagaagcag
gcgtttaatgcctacaaagtccaaactgagaaggaggagaaggaagaggccaggattaaa
tacaaggaatccaaagagaagttccagaggttcttggagaatcatgagaagatgacgtct
accaccagatacaagaaagcagagcaaatgtttaatgagctggaagtgtggagctgtgtt
cctgagagagacagactggagatctatgaagacgtgttgttttacctggcgaagaaagaa
aaggaacaagccaagcagctgaggaagaggaactgggaagctctgaagaatattctggac
aatatggctaatgtgacatatcgcaccacctggtccgaggcccagcagtatctgctggac
aaccccacgtttgccgaggacgaagagctgcagaatatggataaagaggatgccctcatc
tgttttgaggagcacatacgagctctggagaaggaggaggaagaagacaagcagaagact
ctcctcagggaacggagacggcagcgcaagaacagagagtccttccagaaatttctggat
gagctccatgatcacggccagcttcactccatgtcctcctggatggagatgtacccgacc
ctgagctctgacatgcgcttcagcagcatgctgggccagcctggttccactcctttggac
ctcttcaaattctacgtggaagacctgaaagcccgttaccacgatgaaaaacgaataatc
aaagatatcctcaaggataaaggcttcctggtggaagtgaacaccagctttgatgacttt
ggatccgttatcagctcagacaagagagccactactctggatgctgggaacataaagctg
gccttcaacagtttactggagaaggctgaagccagagagcgagagcgagagaaggaggaa
gcccgcaagatgaagcggaaagaagcagctttcaaaaccatgctgaagcaggccacaccg
ccgctggagccagaggcctcatgggaggaagtcagagaaagattcctgaaagaagctgcc
ttcgaagacgtgacgctggagtcagagaggaagaggatattcaaagatttcatgcatgtc
ctggagcatgaatgccagcatcaccattccaagacaaaaaagcattcaaagaagtccaag
aaacaccacaggaagcgatcacgctctcgatcagcatcagagtcggaggaggaggagtac
cataagaagaagaagcggtcccagtccaaatctccctctgagcgctcttctagtggagaa
tctgagcgaagctataaaaaatccaagaagcacaagaagaaaggcaagaagaggcgccac
aagtctgcctcaccggactccgacggcgagaagaaaggaagagagcgcgacgggaaacga
gagcgagattcagagaaggataaagagaacgacaagactcgggggaaatctcgctcagag
tctaaacagaaatctcctaaaaggaaagcagccaaagaggagggtggctgggacacgtca
ggcagtgagctgagtgaaggagagctggagaagagaagaagaactttactggaacagctg
gatgcaccttga
DBGET
integrated database retrieval system
