Xiphophorus hellerii (green swordtail): 116723417
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Entry
116723417 CDS
T07363
Name
(RefSeq) E3 SUMO-protein ligase RanBP2-like isoform X1
KO
K12172
E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03013
Nucleocytoplasmic transport
xhe03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116723417
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
116723417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116723417
03110 Chaperones and folding catalysts [BR:
xhe03110
]
116723417
04121 Ubiquitin system [BR:
xhe04121
]
116723417
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116723417
Chaperones and folding catalysts [BR:
xhe03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
116723417
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
116723417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ran_BP1
IR1-M
Pro_isomerase
Zn_ribbon_RanBP
TPR_2
TPR_1
TPR_16
TPR_14
TPR_CcmH_CycH
TPR_8
ARM_TT21_C
TPR_7
DUF1681
PPR_1
Motif
Other DBs
NCBI-GeneID:
116723417
NCBI-ProteinID:
XP_032424173
LinkDB
All DBs
Position
7:22813958..22847754
Genome browser
AA seq
3027 aa
AA seq
DB search
MRRSKAEVDRYVSSVQSSSPSLKEKPVKGFLFAKLYFEAKEYELAKRHVSEYLKVQERDP
KAHKFLGQLYEREGEINKAIGCYKRSVDLNPVQRDLVLKVAKLFVGKGDCDSRAEFWVEK
AAKLMPGNPEVFNLKERLLSRQGQQGWNQLFDLLQAELAARPADSLVNVKLVQLFCQDGR
LDEAVKHCLATEKKGFLRNSLDWYNVQLNTLQEYLAQPSVLNNEKMCRRLQREVLLAHCS
LLRIRLSESDVQPSLDAFRSFDQAMQALSVVAARFADELFEVFVEMRAHLYLHAATLLLK
MAQDRQHAWRTVIDLAALCYLLAYQAPRPKTNVTKRDQSAPQLLELLASDRQSQAGHMLF
NLSADASTLIREVVEAFGNRSGQESLFELLWGPQASSVSSFIANDDIHSLSSLGPELSKL
VKWDSGSILLHGGELQHLSWLGLQWTLLDQRPPMRDWLQQLFPRLTLETSKLDTNAPESI
CLLDLEVFLCGVVFCSHCQLQDTAKISRSLSPRQQQQLFEPRCLPLPLLRLLATQRQREW
WDAVYSLIHKRALPGTSAKLRMVVQHGLNTLRAGEKHGLQPALMIHWAQILSQTGDGINS
YYDQKEYVGRSVHYWQVVTSLLEKIKSRRSIPEPLDPLFIHFTSKDIQISAVKGYEDEAK
IAFSVLLDIEGRTEEAIATLESINNMSSIWHLAQIYQRLAEEASNGVEETQDRCLTFLRK
FRNYLSKIYNANADDIERLPVSMEEVVDLLNDVNQQLGETQEDMEEEEEQEINLRRGPTH
SSPARLTETSATISHIKFASPSPSKSIVSPSKRLISPKTAPHWIEDQKSLLQMLCQQVEA
LKNEVHDLKHNTSGNSGSPHHKMYGDTYRAESLQEPFTPVQSYHGAPLTVATTGPPVYYN
QSPAYNSQYLLRTAANVTPTKGPVYGVNRMPPQQHMYAYQPPTHTPPLQTAPSCIYPPQE
QVFGSPLRFESQATGLLSPYSEEYYGQSVTQQTNPTLPEPGYFTKPSVAPVQPPKAVEGK
PVDFGKLSFSQQAATEVTRVPNFGAGSVGPATTSPAFKFNCFPKSSERDLNFCSPQTKQS
ESLLGLLTSDLPPKPDSFPEKPPAQEQPPGHQSIFTFGNKNISSFSFVDSTPNASAGGLF
GKPEQPFKLGEVTAFGIGKTSELEKTAESDESTHVEEDEDGPHFEPIVPLPDKVDVKTGE
EEEEMMFCNRAKLYRFDTETKEWKERGIGNIKILKHNTKGKVRLLMRREQVLKICANHYI
TADMLLRPNAGSDKSWVWNAIDYADEEPKPEQLAIRFKTVDEAALFKAKFEEAQKVTSKS
PEKQKQQEKKEETSKDLGLLASRFALKEGEWECAVCDVRNKATAVQCAACNTPNPQSSSK
PELQVTTEAKTSPFNFKFGTDTSKPSGSTPTFTGFGAFGTSVPSSFTFGMSSSKPTDKPA
GPFGFSFGSQFPTKPEQWDCGKCSAKNEASTDSCASCKTPKTTVKTAEIAQIAPAPEAPA
TQSSVSAVDAGFAARFSKKPGQWDCDVCEVRNEASADKCVSCQTPNPASKSSTVAPAAPA
APAGSGFAADFAMKDGQWDCNVCLVRNEGSAAQCVSCQSPNPNPSLEAMFGKKEGEWDCD
ACLVRNKASSNECVACKTSNPNAKSTITSAASASSFSFNIGTTSSSSQAAGSAFTFGSSG
AFQFGQNKDKASASAFKFEAPQAAPATTTSSGFSFSMPIPAGGFKFGVQDSATGLASSNN
QTSTGSASSILKNMADKHKEKENVSTPSIDQTEKDQNPLIAGKADTFSFADLAKSSEGTF
QFGQKDPNFKGFSGAGAQVFASPQTTPTKAEASNELEDDGMYKTEEHDDIQFEPVVQMPD
KVDLVTGEEDEQVLYSQRVKLFRFDSSTSQWKERGVGTLKFLKNNANGRLRVLMRRDQVL
KVCANHWITTTMNLKPLSGSDKAWIWMANDFSDGDAKLEQLAAKFKTTELAEEFKEKFEE
CQRLLLDIPLQTPHKLMDTGRTAHLIKKAEEMKSGLKDLKSFLTDKKTKIQDEEVQGDVT
AASELSSLGIRPHGETGPTLEWDNYDLREEALDDTADSSVYTTPISSSPLRKNLFRFGES
TSGFSFSFQPGISPSKSPAKLNLSRASVGTDEEQDTTQDEERDGQYFEPVVPLPDLVEIS
TGEENELVVFSHRAKLYRYDKEMKQWKERGIGDLKILQSYETKRVRLIMRRDQVLKLCAN
HWISAAMRLEPMKGAEKAWVWSALDFAEEGEGKVEQLAVRFKMQETANTFKQVFEEAKAA
EEKSELMTPVTPRLSAPSESGSSATSESTTTSLCGQAAIAVLEETTQERTATSPAVRSTT
AGSQSPVNPLKTVVSPPKFVFGSDSVQKIFGSPKSESQASASVSGLTAKDGGSSVKPTIP
APAFKMHTGSPQAAAEASSSGSDDDSDVEIVFVREPTAEQAALARKLLLPLTFFCYKNEP
GYTSDDEPDDEDFESAVRALNGKLYPDPPGAAVAVCAEEPDCQFVWEKKPTPEEEERAKS
LQLPPTFFCGLSATDSEPDSEEPEDFETELRKAQQDLVAQLNRGEPVSTDPAEPSQASFS
GPSTSRAEPADGRPTPGNQPGEKPTDTQSETPSSSSSPIDLSTKKSPEPESRTDTTAAPD
SSSFGFDSVAGFSFAELAKNTDGFAFGSNDANFSWANAGATVFGAAAPTEAKNMAAEEGS
DEEETSNNVDIYFEPIVSLPEVETKSGEEDEEILFKERAKLYRWDRDLGQWKERGIGDLK
ILFHPTKHFYRVLMRRDQVLRVCANHTISESMELKPMNTSANALVWTATDYSDGEGEVEQ
LAAKFKTSEVAESFRKTFCECQSRIGQTGDDASVLSRVQEHSRNTNPLVFLRVAADGEPL
GSITIELFSHIVPKTAENFRALCTGEKGFGLQNSVFHRVIPDFMCQGGDITKSDGTGGKS
IYGAAFEDENFDVRHTGPGILSMANRGRDTNNSQFFITLKKAEHLDFKHVAFGYVRDGMS
VVQQMGELGTKGGAPAKKLVVTECGQL
NT seq
9084 nt
NT seq
+upstream
nt +downstream
nt
atgaggcggagtaaggctgaagtggaccgctacgtttcctccgtacagagttcctctcct
tcactcaaagagaagccggtcaaaggatttctatttgcaaaactgtactttgaagcaaaa
gaatatgaacttgcaaaacggcatgtatcggagtatctcaaagtgcaggagagggatccc
aaagcacacaaattcctgggacagctctatgaaagagagggagagatcaacaaggcaatc
ggttgctacaagcgctcggtggacttgaacccggtgcagagagacctggtgctgaaagtt
gccaagctgtttgttggtaagggagactgcgacagcagagccgagttctgggtggaaaaa
gctgcaaaacttatgcctggaaacccagaagtcttcaacttaaaggagcgcctgttgagc
cgtcagggccagcagggttggaaccagctgttcgacctcctccaggccgagctggcagcc
cggccggccgactctctggtgaatgtaaagttggttcagctgttttgccaggacggtcgg
ctggacgaggccgtcaaacattgtctggctactgagaaaaagggctttctgcgcaacagt
ctggactggtacaacgtgcagctgaacacgttacaggagtatctggctcagcccagcgtt
ttaaataatgagaagatgtgtcgacgtctccaaagagaagtgctgctggcgcactgcagc
ctgctgcgaatcagactgtctgagagcgacgtgcagccaagcctcgacgcattcagaagt
ttcgaccaagctatgcaggcgctgagcgtagtcgccgcacgctttgccgatgaactcttt
gaggtgtttgtggagatgagggctcacctgtacctgcatgccgccacgctgctgctgaaa
atggctcaggaccggcagcacgcctggagaaccgtcatcgacctggccgcgctctgctac
ctgctggcataccaggctcccagaccaaagactaacgtgaccaaaagagaccagtcggcg
ccgcagctgctggagctgctggccagtgaccggcagagtcaggcggggcacatgctgttc
aacctgagcgccgacgcctccactttgataagagaggtggtggaggcttttgggaaccgt
agcggtcaggagtctctgtttgagctcctctggggtccgcaggcttcctccgtgtcctcg
tttatcgccaacgacgacattcactcgctcagctctctgggtccagagctctccaaactg
gtcaagtgggactcgggctccatcttgctgcacggcggggagctgcagcatctgagctgg
ctggggctgcagtggacgctgctggaccagaggccgcccatgcgcgactggctgcagcag
ctgtttcccaggctgacgctggaaacgtccaagctggacaccaacgcgccggaatcgatc
tgcctgctggatctggaggtgtttttatgcggcgtggttttctgcagccactgtcagctt
caggacacagcgaagatcagccgcagcctgagtccgcggcagcagcagcagctcttcgag
cctcgctgccttcctcttcctctcctccgcctcctcgccacgcagcgacagagggagtgg
tgggacgccgtctacagcctcatccacaaacgagcccttcctggtacgtcggccaaactg
cgaatggttgtgcaacacggcctgaacacgctgagggccggagagaaacacgggcttcag
ccggcgctgatgatccactgggctcagattctgagccagacgggcgatggaataaactcg
tattacgaccagaaggagtacgtcggccgcagcgtccactactggcaggttgtgacttca
ctgctggagaaaataaaaagccgacgaagcataccagaaccgctggaccctctcttcata
cacttcacatctaaggacattcagatttccgctgtgaaaggttatgaagacgaagcgaaa
atcgcgttttccgttcttctggacatcgaaggcagaactgaggaggcgatcgcgacttta
gaaagcatcaacaacatgtcatccatctggcatttagcacagatttatcagcggctggca
gaggaggccagcaatggcgtggaggagacccaggacaggtgtttaactttcctgaggaag
ttcaggaactacttgtcaaaaatctacaacgccaatgcagacgacatcgaaaggcttccc
gtgtccatggaggaagtggtggacctcctgaacgacgtaaatcagcagcttggtgaaact
caagaggacatggaagaggaagaggagcaggaaattaaccttcggcgaggaccgactcac
tccagcccggctcgtctcacagaaaccagcgccaccatttcgcacatcaagtttgcttct
ccgtctccgagcaaaagcatcgtttctccttccaaaagactgatttcaccaaagacggcg
cctcattggattgaagaccagaaaagtctccttcagatgttatgtcagcaagtagaagcc
ctcaagaatgaggttcatgatctcaaacacaacacatcagggaactccggctcgcctcac
cataagatgtatggagacacctacagagccgagagcttgcaggagccgttcaccccggtc
cagtcctaccacggagccccactaacagttgccaccacaggccctcctgtttattacaac
cagtctcctgcctacaactcccagtatttactgcggacagcggcaaatgtaacccccacc
aagggtccagtgtatggggtgaaccgtatgcccccacagcagcatatgtatgcctaccag
ccgcccacgcacacgcctccgctgcagaccgccccgtcctgcatctaccctccgcaggaa
caagtcttcggttcccctcttcggtttgaatctcaagccacaggccttctctctccatac
agtgaggaatattacggccagagcgtcacccagcagactaaccccactctgcctgagcct
ggctacttcaccaagccctctgtcgcccccgttcaaccaccaaaggccgtcgaggggaag
cctgtggactttgggaagctttccttcagccagcaggctgcaactgaagtaaccagagtg
ccgaatttcggtgcagggtcagttggcccggctacaacttcacctgcttttaaattcaat
tgttttccgaaatcctctgagagagatttaaatttctgttcaccccaaaccaagcaaagt
gaaagtttgctcggcctcctcacttcagacctccccccaaaacccgactcatttccagag
aagccaccggcccaagagcagcccccaggccaccagagcatcttcaccttcgggaataaa
aacataagcagcttctcgtttgtagattccactccaaacgcatcagctggaggtctgttt
gggaagcctgagcaaccgtttaagttgggtgaagtaacagcgtttggcatcggcaagaca
tcagagctggagaagaccgcagagagcgatgagagcacacatgttgaggaggacgaagat
ggtcctcactttgaaccgatcgtccctcttcctgataaggtggatgtgaaaacaggtgaa
gaagaagaggagatgatgttctgcaacagggcgaagctgtaccgattcgacacggagaca
aaagaatggaaagaacgaggaatcggaaatattaaaatcctaaaacacaacactaaaggg
aaggtccgcctcctgatgagaagagagcaggtccttaagatctgtgcaaatcactacatc
actgcagacatgctgctgagacctaacgccggctcagacaaatcctgggtgtggaacgcc
attgactatgcagatgaagagcctaaacctgaacaactggcaattcgcttcaaaactgtg
gatgaggcggctcttttcaaagccaagtttgaggaagcccaaaaggtgacgagcaaatcg
ccagaaaagcaaaaacagcaagagaagaaagaggaaacctccaaagacttgggtttactg
gcgtctcggtttgctcttaaagaaggcgagtgggagtgcgctgtgtgtgatgtacgaaat
aaagcaacggctgtgcagtgtgcagcatgcaacactcccaatccacagtcttcatctaaa
ccagaacttcaggttactactgaagccaaaaccagcccatttaacttcaagtttggtaca
gatacatcaaagcccagtggttcaacccctacatttacaggatttggtgcttttggaact
tcagtaccctcctcttttacattcgggatgagctcctcaaaacctaccgacaaaccggct
ggtccatttggtttcagctttggttcacaatttcccacaaagccagagcagtgggactgt
ggcaagtgttctgcaaagaatgaagcatcaacagacagttgtgcttcttgtaaaactcct
aaaactacagtcaaaacagccgagatagcacaaattgctccggcaccggaagctcctgct
acacagtcttctgtatctgcagttgatgctggatttgctgcacgcttcagcaaaaagcca
ggacagtgggactgtgatgtttgtgaagtgagaaatgaagcctctgcagacaaatgtgtt
tcctgtcaaactccaaacccagcttcaaaatcatccactgtggctccagcagcaccagct
gcacctgcagggtcagggtttgcggcagattttgccatgaaagacggacagtgggactgc
aacgtctgtttggtcagaaatgaagggtcagcagctcagtgtgtttcctgccagtctcca
aatccaaatccttctttagaggccatgtttggcaagaaggaaggagaatgggactgtgac
gcttgtctcgtgagaaataaggcctcttctaatgaatgtgtggcctgtaaaacctcaaac
cctaatgctaaaagcacaatcacatctgctgcttctgcctcgtctttcagtttcaacatt
ggaaccacaagttcatccagccaggctgctggatctgcatttacttttgggagcagtggt
gcttttcagtttggacaaaataaagacaaagcttcagcatctgcattcaagtttgaagct
cctcaggctgcgccagccaccacaacctcctctggattctctttttcaatgcccatccca
gctggtggcttcaagtttggcgttcaggactcagcaacaggtttggcctcatctaataat
caaacttcgacagggtctgcttccagtatcctcaaaaacatggctgacaaacacaaggag
aaagaaaatgtgtctacgccttccatagaccaaacggaaaaagatcaaaatcctttaatt
gctggaaaagccgatacgtttagttttgcagacttggccaagtcctccgaaggaaccttc
cagtttggccagaaagatcccaacttcaaaggtttctcgggagcaggggcgcaggtattc
gcatcgccacagacgacccctaccaaggcagaggcctcaaacgaactggaagacgacggc
atgtataaaacggaagaacacgacgacatccagtttgaaccagtggtccagatgcctgac
aaagtggacctagtgactggtgaggaagatgagcaggtcctctactcccagcgtgtcaaa
ctcttccgattcgattccagcactagtcagtggaaggaacgtggtgtaggaaccctgaag
ttccttaaaaataacgcaaatggccggctcagagtgctaatgagaagggatcaagttctg
aaggtttgcgccaaccactggatcaccaccaccatgaaccttaaaccgctgtctggctca
gacaaagcctggatatggatggccaacgacttctctgatggagatgctaaactcgaacag
ctggcagccaaatttaaaaccacggagctagcagaggagttcaaagagaagtttgaggaa
tgtcagagacttcttttggatatccctctgcagacgccccataagctgatggacactggt
cgaacggctcacctcatcaagaaagcagaggagatgaagtccggtttaaaagacttaaaa
tcgtttttgacggacaagaagacaaaaatccaagacgaagaagtgcagggagacgttact
gccgcaagcgaactttccagtttagggatcaggcctcatggggaaacaggccctaccttg
gagtgggataactacgatctacgggaagaagctttggatgatactgctgactcatcagtc
tacaccacccccatttcgagcagcccccttaggaagaacctcttccgctttggagaatcc
acaagtgggttcagcttcagtttccaacccggcatcagcccatccaagtctcctgcgaag
ctcaacctgagcagagcatcagtgggtaccgacgaggagcaggatacaactcaggacgaa
gagcgagacggacagtactttgaacctgtcgtacctttgcctgacttggttgagatttct
actggagaggaaaatgagctggtggtcttcagccacagagccaaactgtaccgctatgac
aaagagatgaaacagtggaaggagaggggcattggagacctcaagatcctgcagagttat
gagaccaaacgtgtgaggttaataatgaggagagatcaggtgctcaagctctgtgccaac
cactggatctcagccgccatgaggctggagcccatgaagggggcagaaaaggcctgggtc
tggagtgccttggactttgccgaagaaggagagggcaaagttgagcagctggctgtgagg
tttaagatgcaagagactgcaaatacattcaaacaggtctttgaagaggccaaggcggcg
gaggaaaaatcggaactcatgactccggtgacgccaagactctcagcaccatcagaaagt
ggatcgtcagcaacatctgaaagcacaactacatctctttgtgggcaagcagctattgct
gttctggaagaaacaacacaggaacgtacggcaacgtctccggccgtcaggtcgactaca
gctggatctcagagtcctgtcaatcccctgaagaccgtggtgtctccaccgaagtttgtg
ttcggctctgattctgttcagaagatttttggctctcctaagtcagagtcccaagcatct
gcatctgtgtcgggtttgacggccaaagacggtggaagctcagtcaagcctactattcct
gctccagcattcaaaatgcatacaggctctcctcaggcggcggcggaagcttccagctcg
ggttcggatgacgactccgatgtggagattgttttcgtcagagagcccacagctgagcag
gcggcgttagccaggaagctcctgctgcctctcaccttcttctgctacaagaacgagcca
ggctacaccagcgatgacgaacctgatgatgaggactttgagtcggctgtaagagccttg
aatggaaagctctacccagatcctcctggagcagcagtagcagtctgtgctgaggagcca
gactgccagtttgtttgggagaagaaaccaacgccagaggaagaggagcgggcgaagagc
ctccagcttcccccgacgttcttctgcggcctgagcgccacagacagcgaaccggacagc
gaggagcctgaagactttgagacggagctacgcaaagcccaacaagacctggttgcccag
ttaaacagaggtgagccggtctccaccgatcctgcagaaccctcacaggcctcgttctcc
ggcccgtcgaccagcagagcagaacctgcagatggcagacccacaccaggcaatcagcca
ggagaaaaacccacagacactcagagtgaaactcccagcagcagcagctctcctatcgac
ctgtccactaagaagagcccagaaccagagtccagaaccgacaccacagctgctccagat
tcttcctcctttggcttcgactcagtcgctgggttttcgtttgctgagctcgccaaaaac
actgacggattcgcatttggatctaatgatgccaatttctcctgggcgaatgccggagcg
actgtgtttggagctgcggctcccactgaggctaaaaacatggccgccgaggaaggaagt
gatgaagaggagacctccaacaacgtggatatctactttgaacccatcgtttctctacct
gaggtggagacgaaatctggcgaggaagacgaggaaatcttgtttaaagagcgagccaag
ctctaccgatgggaccgcgacctcggccagtggaaggagcgcggcatcggagacctcaag
atcctcttccacccgaccaaacacttctaccgggtcctgatgcgaagagaccaggtgctg
agggtttgtgccaaccacaccatctcagagtccatggagctgaaacccatgaacacctcc
gccaacgcgctcgtctggaccgccaccgactactcggatggtgaaggtgaggtggagcag
ctggcagctaagttcaaaacctcagaggtagccgagtcgttcaggaagaccttctgcgaa
tgtcagagccgcatcggccaaaccggcgacgacgcctcggtgctgtccagagtacaggaa
cactccagaaacacgaacccgctggtgttcctcagggtggcagccgacggcgagccgctg
ggctccatcaccatcgagcttttctctcacatcgtccccaaaacggcggagaacttcaga
gcgctgtgcaccggagagaaaggcttcggcctgcagaactccgtcttccatcgggtcata
ccggacttcatgtgtcagggaggcgacatcaccaaaagtgacggcaccggcggcaaatcc
atctacggcgccgcgttcgaggacgaaaacttcgacgtccggcacacggggccgggcatc
ctgtcgatggcgaaccgtgggcgggacaccaacaactcgcagttcttcataacgctgaag
aaagccgaacatttggacttcaaacacgtggcgttcggctacgttcgggacgggatgagc
gtggtgcagcagatgggagagctgggcacgaagggcggggctcccgccaagaagctggtc
gtcacggagtgcggacagctgtag
DBGET
integrated database retrieval system
